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Search of human proteins with 239743997
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743997 PREDICTED: hypothetical protein XP_002343013 [Homo
sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755261 PREDICTED: hypothetical protein [Homo sapiens] 293 4e-80
gi|239749742 PREDICTED: hypothetical protein XP_002347147 [Homo ... 293 4e-80
gi|239743997 PREDICTED: hypothetical protein XP_002343013 [Homo ... 293 4e-80
gi|76496497 artemis protein isoform a [Homo sapiens] 200 3e-52
gi|76496495 artemis protein isoform b [Homo sapiens] 200 3e-52
gi|76496501 artemis protein isoform c [Homo sapiens] 200 3e-52
gi|76496499 artemis protein isoform d [Homo sapiens] 200 3e-52
gi|223278374 DNA cross-link repair 1A [Homo sapiens] 34 0.030
gi|65288071 tensin 3 [Homo sapiens] 29 1.3
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 29 1.3
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 29 1.3
gi|38787970 tensin like C1 domain containing phosphatase isoform... 27 3.7
gi|38787957 tensin like C1 domain containing phosphatase isoform... 27 3.7
gi|38787941 tensin like C1 domain containing phosphatase isoform... 27 3.7
gi|12383082 DNA cross-link repair 1B (PSO2 homolog, S. cerevisia... 27 4.8
gi|170932467 phytoceramidase, alkaline [Homo sapiens] 27 4.8
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 27 6.3
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 27 6.3
>gi|239755261 PREDICTED: hypothetical protein [Homo sapiens]
Length = 133
Score = 293 bits (749), Expect = 4e-80
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60
MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV
Sbjct: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60
Query: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120
QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN
Sbjct: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120
Query: 121 TQIHAWWHPKVHV 133
TQIHAWWHPKVHV
Sbjct: 121 TQIHAWWHPKVHV 133
>gi|239749742 PREDICTED: hypothetical protein XP_002347147 [Homo
sapiens]
Length = 133
Score = 293 bits (749), Expect = 4e-80
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60
MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV
Sbjct: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60
Query: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120
QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN
Sbjct: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120
Query: 121 TQIHAWWHPKVHV 133
TQIHAWWHPKVHV
Sbjct: 121 TQIHAWWHPKVHV 133
>gi|239743997 PREDICTED: hypothetical protein XP_002343013 [Homo
sapiens]
Length = 133
Score = 293 bits (749), Expect = 4e-80
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60
MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV
Sbjct: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60
Query: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120
QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN
Sbjct: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120
Query: 121 TQIHAWWHPKVHV 133
TQIHAWWHPKVHV
Sbjct: 121 TQIHAWWHPKVHV 133
>gi|76496497 artemis protein isoform a [Homo sapiens]
Length = 692
Score = 200 bits (508), Expect = 3e-52
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 28 DIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFT 87
DIQSVYLDT CDPRFYQIPS+EECL GVLELV+SWIT+S YHVVWLNCKAAYGYEYLFT
Sbjct: 158 DIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFT 217
Query: 88 NLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWHPK 130
NLSEELGVQ+HVNKLDMFRNMPEILHHLTTDRNTQIHA HPK
Sbjct: 218 NLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPK 260
>gi|76496495 artemis protein isoform b [Homo sapiens]
Length = 577
Score = 200 bits (508), Expect = 3e-52
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 28 DIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFT 87
DIQSVYLDT CDPRFYQIPS+EECL GVLELV+SWIT+S YHVVWLNCKAAYGYEYLFT
Sbjct: 43 DIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFT 102
Query: 88 NLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWHPK 130
NLSEELGVQ+HVNKLDMFRNMPEILHHLTTDRNTQIHA HPK
Sbjct: 103 NLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPK 145
>gi|76496501 artemis protein isoform c [Homo sapiens]
Length = 572
Score = 200 bits (508), Expect = 3e-52
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 28 DIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFT 87
DIQSVYLDT CDPRFYQIPS+EECL GVLELV+SWIT+S YHVVWLNCKAAYGYEYLFT
Sbjct: 38 DIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFT 97
Query: 88 NLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWHPK 130
NLSEELGVQ+HVNKLDMFRNMPEILHHLTTDRNTQIHA HPK
Sbjct: 98 NLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPK 140
>gi|76496499 artemis protein isoform d [Homo sapiens]
Length = 572
Score = 200 bits (508), Expect = 3e-52
Identities = 93/103 (90%), Positives = 97/103 (94%)
Query: 28 DIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFT 87
DIQSVYLDT CDPRFYQIPS+EECL GVLELV+SWIT+S YHVVWLNCKAAYGYEYLFT
Sbjct: 38 DIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFT 97
Query: 88 NLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWHPK 130
NLSEELGVQ+HVNKLDMFRNMPEILHHLTTDRNTQIHA HPK
Sbjct: 98 NLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPK 140
>gi|223278374 DNA cross-link repair 1A [Homo sapiens]
Length = 1040
Score = 34.3 bits (77), Expect = 0.030
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 29 IQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFTN 88
+ +YLDT C P Y PSQ+E + + +T + H + + + G E +F
Sbjct: 832 VHMLYLDTTYCSPE-YTFPSQQEVIRFAINTAFEAVTLN-PHALVVCGTYSIGKEKVFLA 889
Query: 89 LSEELGVQIHVN----KLDMFRNMPEILHHLTTD 118
+++ LG ++ ++ K N+PEI +TTD
Sbjct: 890 IADVLGSKVGMSQEKYKTLQCLNIPEINSLITTD 923
>gi|65288071 tensin 3 [Homo sapiens]
Length = 1445
Score = 28.9 bits (63), Expect = 1.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 53 LCGVLELVQSWITQSLYHVVWLNCKAAYG 81
+C + + +SW+ +L HVV ++C+ G
Sbjct: 84 MCTICKAQESWLNSNLQHVVVIHCRGGKG 112
>gi|57222563 colonic and hepatic tumor over-expressed protein isoform
b [Homo sapiens]
Length = 1972
Score = 28.9 bits (63), Expect = 1.3
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 23/100 (23%)
Query: 16 KLLEWSFCTPGAD-IQSVYLDTMLCDPRFYQ---------------------IPSQEECL 53
K+L+W+F TP + I+ + C ++ Q + S++E +
Sbjct: 1179 KVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKEGV 1238
Query: 54 CGVLELVQSWITQSLYHV-VWLNCKAAYGYEYLFTNLSEE 92
G L+L+ W+T + + KA + LFT LSEE
Sbjct: 1239 IGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEE 1278
>gi|57164942 colonic and hepatic tumor over-expressed protein isoform
a [Homo sapiens]
Length = 2032
Score = 28.9 bits (63), Expect = 1.3
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 23/100 (23%)
Query: 16 KLLEWSFCTPGAD-IQSVYLDTMLCDPRFYQ---------------------IPSQEECL 53
K+L+W+F TP + I+ + C ++ Q + S++E +
Sbjct: 1179 KVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKEGV 1238
Query: 54 CGVLELVQSWITQSLYHV-VWLNCKAAYGYEYLFTNLSEE 92
G L+L+ W+T + + KA + LFT LSEE
Sbjct: 1239 IGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEE 1278
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 27.3 bits (59), Expect = 3.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 53 LCGVLELVQSWITQSLYHVVWLNCKAAYG 81
LC + + +++W++ HVV L CK G
Sbjct: 84 LCSICKAMETWLSADPQHVVVLYCKGNKG 112
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 27.3 bits (59), Expect = 3.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 53 LCGVLELVQSWITQSLYHVVWLNCKAAYG 81
LC + + +++W++ HVV L CK G
Sbjct: 208 LCSICKAMETWLSADPQHVVVLYCKGNKG 236
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 27.3 bits (59), Expect = 3.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 53 LCGVLELVQSWITQSLYHVVWLNCKAAYG 81
LC + + +++W++ HVV L CK G
Sbjct: 218 LCSICKAMETWLSADPQHVVVLYCKGNKG 246
>gi|12383082 DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae)
[Homo sapiens]
Length = 532
Score = 26.9 bits (58), Expect = 4.8
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 24 TPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQ 61
T G I ++YLD C+P +PS++E +++L++
Sbjct: 134 TLGKQIHTLYLDNTNCNPALV-LPSRQEAAHQIVQLIR 170
>gi|170932467 phytoceramidase, alkaline [Homo sapiens]
Length = 267
Score = 26.9 bits (58), Expect = 4.8
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 28/109 (25%)
Query: 29 IQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLN-CKAAYGYE---- 83
+ +VYL +P F+Q+ + G+L V + + +S+Y V W+ GY
Sbjct: 132 VTTVYLKVK--EPIFHQV------MYGML--VFTLVLRSIYIVTWVYPWLRGLGYTSLGI 181
Query: 84 ----YLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWH 128
+LF N+ I L FR + +TT Q HAWWH
Sbjct: 182 FLLGFLFWNIDN-----IFCESLRNFRKKVPPIIGITT----QFHAWWH 221
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 26.6 bits (57), Expect = 6.3
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 12 WCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHV 71
WC+E EW F + + +++ LD + QEE L + + ++ T+ L +
Sbjct: 3463 WCEELKQEWKFVSEEIEREAIILDNL-----------QEE-LPEISKTKEAATTEELSEL 3510
Query: 72 VWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPE 110
L+C YG ++L + + + ++ +N+PE
Sbjct: 3511 --LDCLCQYGENV----EKQQLLLTLLLQRIRSIQNVPE 3543
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 26.6 bits (57), Expect = 6.3
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 12 WCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHV 71
WC+E EW F + + +++ LD + QEE L + + ++ T+ L +
Sbjct: 3463 WCEELKQEWKFVSEEIEREAIILDNL-----------QEE-LPEISKTKEAATTEELSEL 3510
Query: 72 VWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPE 110
L+C YG ++L + + + ++ +N+PE
Sbjct: 3511 --LDCLCQYGENV----EKQQLLLTLLLQRIRSIQNVPE 3543
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,750,999
Number of Sequences: 37866
Number of extensions: 229280
Number of successful extensions: 545
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 19
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.