Search of human proteins with 239743801

Search of human proteins with 239743801

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239743801 PREDICTED: hypothetical protein XP_002342960 [Homo
sapiens]
         (78 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239743801 PREDICTED: hypothetical protein XP_002342960 [Homo ...   159   6e-40
gi|239750232 PREDICTED: hypothetical protein XP_002347325 [Homo ...    81   2e-16
gi|239758109 PREDICTED: hypothetical protein [Homo sapiens]            80   5e-16
gi|61676082 shadow of prion protein [Homo sapiens]                     27   3.5  
gi|239754810 PREDICTED: hypothetical protein [Homo sapiens]            26   6.0  
gi|19923790 rab3 GTPase-activating protein, non-catalytic subuni...    26   6.0  
gi|18702331 OTU domain containing 7A [Homo sapiens]                    26   6.0  
gi|224458301 family with sequence similarity 186, member A [Homo...    26   7.9  
gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo sapi...    26   7.9  
gi|167466190 forkhead box P3 isoform b [Homo sapiens]                  26   7.9  
gi|31982943 forkhead box P3 isoform a [Homo sapiens]                   26   7.9  
gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Hom...    26   7.9  
gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Hom...    26   7.9  
gi|154240732 hypothetical protein LOC201243 [Homo sapiens]             26   7.9  

>gi|239743801 PREDICTED: hypothetical protein XP_002342960 [Homo
          sapiens]
          Length = 78

 Score =  159 bits (401), Expect = 6e-40
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MLVFHAFLEVSGAPQSSRNSQHGHAFGGQKLEQQAPLQRAKKRGIQNHASVGLSVTPVWM 60
          MLVFHAFLEVSGAPQSSRNSQHGHAFGGQKLEQQAPLQRAKKRGIQNHASVGLSVTPVWM
Sbjct: 1  MLVFHAFLEVSGAPQSSRNSQHGHAFGGQKLEQQAPLQRAKKRGIQNHASVGLSVTPVWM 60

Query: 61 GLSASSSVAGLNVGICHL 78
          GLSASSSVAGLNVGICHL
Sbjct: 61 GLSASSSVAGLNVGICHL 78


>gi|239750232 PREDICTED: hypothetical protein XP_002347325 [Homo
          sapiens]
          Length = 139

 Score = 80.9 bits (198), Expect = 2e-16
 Identities = 45/72 (62%), Positives = 53/72 (73%), Gaps = 2/72 (2%)

Query: 1  MLVFHAFLEVSGAPQSSRNSQH--GHAFGGQKLEQQAPLQRAKKRGIQNHASVGLSVTPV 58
          ML FHA LEVS +PQSS N Q      +G +  EQQ PLQRAK+RGI+N  S+GLSVTPV
Sbjct: 27 MLRFHASLEVSVSPQSSGNKQSTWSRFWGPETREQQDPLQRAKERGIRNLGSLGLSVTPV 86

Query: 59 WMGLSASSSVAG 70
          W+G+SA  SVAG
Sbjct: 87 WVGVSALRSVAG 98


>gi|239758109 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 139

 Score = 79.7 bits (195), Expect = 5e-16
 Identities = 44/72 (61%), Positives = 53/72 (73%), Gaps = 2/72 (2%)

Query: 1  MLVFHAFLEVSGAPQSSRNSQH--GHAFGGQKLEQQAPLQRAKKRGIQNHASVGLSVTPV 58
          ML FHA LEVS +PQSS N Q      +G +  EQQ PLQRAK+RGI+N  S+GLSVTPV
Sbjct: 27 MLRFHASLEVSVSPQSSGNKQSTWSRFWGPETREQQDPLQRAKERGIRNLGSLGLSVTPV 86

Query: 59 WMGLSASSSVAG 70
          W+G+SA  SV+G
Sbjct: 87 WVGVSALRSVSG 98


>gi|61676082 shadow of prion protein [Homo sapiens]
          Length = 151

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 1  MLVFHAFLEVSGAPQSSRNSQHGHAFGGQKLEQQAPLQRAKKRGIQNHASVGLSVTPVWM 60
          +L+  AFL  SGA +  R    G A GG +   +    R + R  Q + + G S+     
Sbjct: 11 LLLAAAFLCDSGAAKGGRGGARGSARGGVRGGARG-ASRVRVRPAQRYGAPGSSLRVAAA 69

Query: 61 GL---SASSSVAGLNVG 74
          G    +A+ + AGL  G
Sbjct: 70 GAAAGAAAGAAAGLAAG 86


>gi|239754810 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 421

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 11  SGAPQSSRNSQHGHAFGGQKLEQQAPLQRAKKRG----IQNHASVGLSVTPVWMGL 62
           S +P S R        G ++ +QQ  L+ A ++G    +    SVG+   P WM L
Sbjct: 212 SRSPGSQRLGPSQRPLGHEEGQQQPELRMASRKGPCQPLSQTWSVGIGWGPSWMPL 267


>gi|19923790 rab3 GTPase-activating protein, non-catalytic subunit
           [Homo sapiens]
          Length = 1393

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 15  QSSRNSQHGHAFGGQKLEQQAPLQRAKKRGIQN------HASVGLSVTPVWMGLSASSSV 68
           ++ RN     A  G +  Q  PL   KK G+Q+      HASVG+     +  +  +S++
Sbjct: 229 RACRNQVAKAAASGNENIQPPPLAY-KKWGLQDIDTIIDHASVGIMTLSPFDQMKTASNI 287

Query: 69  AGLNVGI 75
            G N  I
Sbjct: 288 GGFNAAI 294


>gi|18702331 OTU domain containing 7A [Homo sapiens]
          Length = 926

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 5   HAFLEVSGAPQSSRNSQHGHAFGGQKLEQQAPLQRAKK--RGIQNHASVGLSV 55
           H F E  G  Q  R  Q GH      L++Q  + + K+  RGI + +S  +S+
Sbjct: 76  HVFNEGRGPKQPEREPQPGHKVERPCLQRQDDIAQEKRLSRGISHASSAIVSL 128


>gi|224458301 family with sequence similarity 186, member A [Homo
            sapiens]
          Length = 2351

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 12   GAPQSSRNSQHGHAFGGQKLEQQAPLQRA 40
            GAPQ+ R+S     +GGQ    Q P  +A
Sbjct: 1790 GAPQTLRSSGQTLVYGGQSTSAQFPAPQA 1818


>gi|239788462 dihydrouridine synthase 3-like isoform 1 [Homo
          sapiens]
          Length = 650

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 4  FHAFLEVSGAPQSSRNSQHGHAFGGQKLEQQA 35
          FH FLE  G  ++ R ++ G   G +  E +A
Sbjct: 41 FHQFLEAKGQEKTCRETEVGDPAGNELAEPEA 72


>gi|167466190 forkhead box P3 isoform b [Homo sapiens]
          Length = 396

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 29  QKLEQQAPLQRAKKRGIQNHASVGLSVTPVWMGLSASSSVAGLNVGIC 76
           Q LEQQ  L++ K   +Q H +         M L+ +SSVA  + G C
Sbjct: 205 QSLEQQLVLEKEKLSAMQAHLAGK-------MALTKASSVASSDKGSC 245


>gi|31982943 forkhead box P3 isoform a [Homo sapiens]
          Length = 431

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 29  QKLEQQAPLQRAKKRGIQNHASVGLSVTPVWMGLSASSSVAGLNVGIC 76
           Q LEQQ  L++ K   +Q H +         M L+ +SSVA  + G C
Sbjct: 240 QSLEQQLVLEKEKLSAMQAHLAGK-------MALTKASSVASSDKGSC 280


>gi|194353995 apolipoprotein L domain containing 1 isoform 1 [Homo
           sapiens]
          Length = 279

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 49  ASVGLSVTPVWMGLSASSSVAGLNV 73
           A VGLS++PV +G S   S  GL V
Sbjct: 101 AIVGLSLSPVTLGTSLLVSAVGLGV 125


>gi|194353993 apolipoprotein L domain containing 1 isoform 2 [Homo
          sapiens]
          Length = 248

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 49 ASVGLSVTPVWMGLSASSSVAGLNV 73
          A VGLS++PV +G S   S  GL V
Sbjct: 70 AIVGLSLSPVTLGTSLLVSAVGLGV 94


>gi|154240732 hypothetical protein LOC201243 [Homo sapiens]
          Length = 501

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 13  APQSSRNSQHGHAFGGQKLE---QQAPLQRAKK--RGIQNHASVGLSVTPVWMGLSASSS 67
           +PQS + S  GHA+G           PL  + +  R ++  A+      P W  L+ S+S
Sbjct: 344 SPQSHQQSLLGHAYGQSHRSPHPSTEPLGYSSQDPREVRRRAADWAEALPAWRPLTTSAS 403

Query: 68  VAGLN 72
           +  L+
Sbjct: 404 LTVLD 408


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.130    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,703,000
Number of Sequences: 37866
Number of extensions: 88433
Number of successful extensions: 257
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 14
length of query: 78
length of database: 18,247,518
effective HSP length: 50
effective length of query: 28
effective length of database: 16,354,218
effective search space: 457918104
effective search space used: 457918104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.