Guide to the Human Genome
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Name: LOC100287759 Sequence: fasta or formatted (78aa) NCBI GI: 239743801
Description:

PREDICTED: hypothetical protein XP_002342960

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3          8           1
 C cysteine            1.3          1           1
 D aspartate           0.0          0           0
 E glutamate           2.6          2           1
 F phenylalanine       3.8          3           1
 G glycine            11.5          9           2
 H histidine           6.4          5           1
 I isoleucine          2.6          2           1
 K lysine              3.8          3           2
 L leucine            10.3          8           1
 M methionine          2.6          2           1
 N asparagine          3.8          3           1
 P proline             3.8          3           1
 Q glutamine           9.0          7           2
 R arginine            3.8          3           1
 S serine             12.8         10           3
 T threonine           1.3          1           1
 V valine              9.0          7           1
 W tryptophan          1.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342960 
LOC100290838          0.418   PREDICTED: hypothetical protein XP_002347325 
LOC100292185          0.410   PREDICTED: hypothetical protein 
SPRN                  0.015   shadow of prion protein 
LOC100292427          0.007   PREDICTED: hypothetical protein 
RAB3GAP2              0.007   rab3 GTPase-activating protein, non-catalytic subuni...
OTUD7A                0.007   OTU domain containing 7A 
FAM186A               0.007   family with sequence similarity 186, member A [Homo...
DUS3L                 0.007   dihydrouridine synthase 3-like isoform 1 
FOXP3                 0.007   forkhead box P3 isoform b 
FOXP3                 0.007   forkhead box P3 isoform a 
APOLD1                0.007   apolipoprotein L domain containing 1 isoform 1 [Hom...
APOLD1                0.007   apolipoprotein L domain containing 1 isoform 2 [Hom...
C17orf74              0.007   hypothetical protein LOC201243 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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