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Search of human proteins with 239743690
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo
sapiens]
(239 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755027 PREDICTED: hypothetical protein [Homo sapiens] 498 e-141
gi|239749540 PREDICTED: hypothetical protein [Homo sapiens] 498 e-141
gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo ... 498 e-141
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 41 8e-04
gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] 41 8e-04
gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] 41 8e-04
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 39 0.004
gi|50511941 EMI domain containing 1 [Homo sapiens] 39 0.005
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 37 0.020
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 35 0.044
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 35 0.058
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 35 0.058
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.075
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 35 0.075
gi|145301567 hypothetical protein LOC56006 [Homo sapiens] 35 0.075
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 35 0.075
gi|56847616 C1q and tumor necrosis factor related protein 9B [Ho... 34 0.13
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 33 0.22
gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens] 33 0.22
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 33 0.22
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 33 0.22
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 32 0.37
gi|118402590 myosin XV [Homo sapiens] 32 0.37
gi|182765442 homeobox A10 isoform a [Homo sapiens] 32 0.37
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 32 0.37
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.49
>gi|239755027 PREDICTED: hypothetical protein [Homo sapiens]
Length = 239
Score = 498 bits (1283), Expect = e-141
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MGFPDAQDLGTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPLRHL 60
MGFPDAQDLGTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPLRHL
Sbjct: 1 MGFPDAQDLGTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPLRHL 60
Query: 61 PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG 120
PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG
Sbjct: 61 PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG 120
Query: 121 PGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPR 180
PGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPR
Sbjct: 121 PGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPR 180
Query: 181 SPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPRHFSHGTF 239
SPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPRHFSHGTF
Sbjct: 181 SPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPRHFSHGTF 239
>gi|239749540 PREDICTED: hypothetical protein [Homo sapiens]
Length = 239
Score = 498 bits (1283), Expect = e-141
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MGFPDAQDLGTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPLRHL 60
MGFPDAQDLGTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPLRHL
Sbjct: 1 MGFPDAQDLGTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPLRHL 60
Query: 61 PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG 120
PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG
Sbjct: 61 PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG 120
Query: 121 PGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPR 180
PGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPR
Sbjct: 121 PGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPR 180
Query: 181 SPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPRHFSHGTF 239
SPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPRHFSHGTF
Sbjct: 181 SPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPRHFSHGTF 239
>gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo
sapiens]
Length = 239
Score = 498 bits (1283), Expect = e-141
Identities = 239/239 (100%), Positives = 239/239 (100%)
Query: 1 MGFPDAQDLGTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPLRHL 60
MGFPDAQDLGTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPLRHL
Sbjct: 1 MGFPDAQDLGTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPLRHL 60
Query: 61 PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG 120
PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG
Sbjct: 61 PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG 120
Query: 121 PGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPR 180
PGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPR
Sbjct: 121 PGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPR 180
Query: 181 SPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPRHFSHGTF 239
SPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPRHFSHGTF
Sbjct: 181 SPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPRHFSHGTF 239
>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 41.2 bits (95), Expect = 8e-04
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 66 LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119
L PG++ SR G G G++G G+G G + G W R G T P
Sbjct: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
Query: 120 GPGAERRPCLPQGVPGAKLSAS 141
GPG ERR C+ V GA+ S +
Sbjct: 141 GPGGERRVCVRASVAGARPSVA 162
>gi|169201345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 41.2 bits (95), Expect = 8e-04
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 66 LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119
L PG++ SR G G G++G G+G G + G W R G T P
Sbjct: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
Query: 120 GPGAERRPCLPQGVPGAKLSAS 141
GPG ERR C+ V GA+ S +
Sbjct: 141 GPGGERRVCVRASVAGARPSVA 162
>gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 41.2 bits (95), Expect = 8e-04
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 66 LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119
L PG++ SR G G G++G G+G G + G W R G T P
Sbjct: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
Query: 120 GPGAERRPCLPQGVPGAKLSAS 141
GPG ERR C+ V GA+ S +
Sbjct: 141 GPGGERRVCVRASVAGARPSVA 162
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 53 PWSPLRHLPQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERP 112
P P R L R PG +G + G G+ G GG LG G R RA RP
Sbjct: 4 PTQPARRLQPRKSSFPG-DGDEAPGPGGGEGAAAGGGGGG-LGSGGRSAQRRAGAGARRP 61
Query: 113 GLGTPRTGPGAE------RRPCLPQGVPG 135
P GPG E + C P G G
Sbjct: 62 IGAAPSVGPGGELQGWGRKSGCRPPGPEG 90
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 53 PWSPLRHLPQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERP 112
P P R L R PG +G + G G+ G GG LG G R RA RP
Sbjct: 4 PTQPARRLQPRKSSFPG-DGDEAPGPGGGEGAAAGGGGGG-LGSGGRSAQRRAGAGARRP 61
Query: 113 GLGTPRTGPGAE------RRPCLPQGVPG 135
P GPG E + C P G G
Sbjct: 62 IGAAPSVGPGGELQGWGRKSGCRPPGPEG 90
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 39.7 bits (91), Expect = 0.002
Identities = 30/89 (33%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 53 PWSPLRHLPQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERP 112
P P R L R PG +G + G G+ G GG LG G R RA RP
Sbjct: 4 PTQPARRLQPRKSSFPG-DGDEAPGPGGGEGAAAGGGGGG-LGSGGRSAQRRAGAGARRP 61
Query: 113 GLGTPRTGPGAE------RRPCLPQGVPG 135
P GPG E + C P G G
Sbjct: 62 IGAAPSVGPGGELQGWGRKSGCRPPGPEG 90
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 38.9 bits (89), Expect = 0.004
Identities = 50/184 (27%), Positives = 71/184 (38%), Gaps = 27/184 (14%)
Query: 67 IPGLEGSRSHGFNLGDSVCVGAQG--GDVLGKGTRWTLGRAD--GSWERPGLGTPRTGPG 122
IPG +G + H G+ G G G + KG G G +PG P+ PG
Sbjct: 720 IPGQQGIQGHHGAKGERGEKGEPGVRGAIGSKGESGVDGLMGPAGPKGQPGDPGPQGPPG 779
Query: 123 AERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTA---DRGRRTSGNGPTSDPNP 179
+ G PG + S T + R +LP+LLQ+ + S +G P P
Sbjct: 780 LD-------GKPGREFSEQFIRQVCTDVIRAQLPVLLQSGRIRNCDHCLSQHGSPGIPGP 832
Query: 180 RSPL----PQGDPRLGSAEWRPGRLGIRVRRPREQRVNA--------AFHGSDYRGRALP 227
P+ P+G P L + PG +G+ RP + + G Y G P
Sbjct: 833 PGPIGPEGPRGLPGLPGRDGVPGLVGV-PGRPGVRGLKGLPGRNGEKGSQGFGYPGEQGP 891
Query: 228 PPPP 231
P PP
Sbjct: 892 PGPP 895
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 38.5 bits (88), Expect = 0.005
Identities = 45/163 (27%), Positives = 53/163 (32%), Gaps = 22/163 (13%)
Query: 48 QEAAPPWSPLRHLPQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADG 107
++ AP W P P +GS G L D V G KG + G G
Sbjct: 174 EDPAPLWGP-----------PPAQGSPGDG-GLQDQVGAWGLPGPTGPKGDAGSRGPM-G 220
Query: 108 SWERPGLGTPRTGPG--------AERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLL 159
PG P PG ER P P G PG + I + PLL
Sbjct: 221 MRGPPGPQGPPGSPGRAGAVGTPGERGPPGPPGPPGPPGPPAPVGPPHARISQHGDPLLS 280
Query: 160 QTADRGRRTSGNGPTSDPNPRSPL-PQGDPRLGSAEWRPGRLG 201
T GPT P P P+ P G P PG +G
Sbjct: 281 NTFTETNNHWPQGPTGPPGPPGPMGPPGPPGPTGVPGSPGHIG 323
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 36.6 bits (83), Expect = 0.020
Identities = 42/137 (30%), Positives = 49/137 (35%), Gaps = 26/137 (18%)
Query: 61 PQRDPLIPGLEGSRSHGFNLGDSVCVGAQG--------GDVLGKGTRWTLGRADGSWERP 112
P DP +PG G+ G + G +G G G T G A G P
Sbjct: 1270 PPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPG-APGLKGSP 1328
Query: 113 GLGTPRTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNG 172
GL PR PG ER P P+G PGA + LP R G
Sbjct: 1329 GLPGPRGDPG-ERGPRGPKGEPGAPGQVIGG-------EGPGLP---------GRKGDPG 1371
Query: 173 PTSDPNPRSPLPQGDPR 189
P+ P PR PL PR
Sbjct: 1372 PSGPPGPRGPLGDPGPR 1388
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 35.4 bits (80), Expect = 0.044
Identities = 39/122 (31%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 113 GLGTPRTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTAD-RGRRTSGN 171
G G+P+ G+ +R G PG+ S D + + R K T RG+ +
Sbjct: 307 GWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKES--- 363
Query: 172 GPTSDPNPRSPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALP-PPP 230
P+PRS P R G A GR R RR R R +A+ RGR P P P
Sbjct: 364 -----PSPRSA-PSSQGRGGRAAGGAGRRRRRRRRRRRSRSSAS--APRRRGRRRPRPAP 415
Query: 231 PR 232
PR
Sbjct: 416 PR 417
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 35.0 bits (79), Expect = 0.058
Identities = 45/127 (35%), Positives = 55/127 (43%), Gaps = 36/127 (28%)
Query: 126 RPCLPQGVP-GAKLSASDASVAETIIQRTKLPLLLQ--TADRGRRTSGNGPTSDPNPRSP 182
RP LP + GA+ +A A+ + P L TA RGRRT + PT P PR P
Sbjct: 167 RPALPAALHIGARATAGLAA-------KRAQPQLCSAGTAARGRRTRASPPT-PPRPRPP 218
Query: 183 -LPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRA--LPPPPPR------- 232
L GD G G RV RP +R G+ RG A +PP P R
Sbjct: 219 GLRSGDVPRG---------GARVERPTGRR------GAGGRGGAQRIPPRPLRRLVPIHP 263
Query: 233 HFSHGTF 239
H SH +F
Sbjct: 264 HPSHWSF 270
Score = 28.1 bits (61), Expect = 7.0
Identities = 38/154 (24%), Positives = 52/154 (33%), Gaps = 14/154 (9%)
Query: 88 AQGGDVLGKGTRWTLGRADGSWERPGLGTPRTGPGAE-------RRPCLPQGVPGAKLSA 140
A G +L G+R G G+ G G G R PC G GA+
Sbjct: 66 AAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRG 125
Query: 141 --SDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPRSPLPQGDPRLGSAEWRPG 198
S + + + P L R + P PR LP +G+
Sbjct: 126 CHSPSCCRSSSCAWHRWPQLRGREAEPRASPALLICIAPRPRPALPAA-LHIGAR----A 180
Query: 199 RLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPR 232
G+ +R + Q +A R RA PP PPR
Sbjct: 181 TAGLAAKRAQPQLCSAGTAARGRRTRASPPTPPR 214
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 35.0 bits (79), Expect = 0.058
Identities = 45/127 (35%), Positives = 55/127 (43%), Gaps = 36/127 (28%)
Query: 126 RPCLPQGVP-GAKLSASDASVAETIIQRTKLPLLLQ--TADRGRRTSGNGPTSDPNPRSP 182
RP LP + GA+ +A A+ + P L TA RGRRT + PT P PR P
Sbjct: 167 RPALPAALHIGARATAGLAA-------KRAQPQLCSAGTAARGRRTRASPPT-PPRPRPP 218
Query: 183 -LPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRA--LPPPPPR------- 232
L GD G G RV RP +R G+ RG A +PP P R
Sbjct: 219 GLRSGDVPRG---------GARVERPTGRR------GAGGRGGAQRIPPRPLRRLVPIHP 263
Query: 233 HFSHGTF 239
H SH +F
Sbjct: 264 HPSHWSF 270
Score = 28.1 bits (61), Expect = 7.0
Identities = 38/154 (24%), Positives = 52/154 (33%), Gaps = 14/154 (9%)
Query: 88 AQGGDVLGKGTRWTLGRADGSWERPGLGTPRTGPGAE-------RRPCLPQGVPGAKLSA 140
A G +L G+R G G+ G G G R PC G GA+
Sbjct: 66 AAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRG 125
Query: 141 --SDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPRSPLPQGDPRLGSAEWRPG 198
S + + + P L R + P PR LP +G+
Sbjct: 126 CHSPSCCRSSSCAWHRWPQLRGREAEPRASPALLICIAPRPRPALPAA-LHIGAR----A 180
Query: 199 RLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPR 232
G+ +R + Q +A R RA PP PPR
Sbjct: 181 TAGLAAKRAQPQLCSAGTAARGRRTRASPPTPPR 214
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 34.7 bits (78), Expect = 0.075
Identities = 38/132 (28%), Positives = 46/132 (34%), Gaps = 25/132 (18%)
Query: 65 PLIPGLEGSRSHGFNLGDSVCVG--------AQGGDVLGKGTRWTLGRADGSWERPGLGT 116
P +PG+ G R G++ G Q G+ GKG R G G PG+
Sbjct: 785 PGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEK-GEGGPPGVAG 843
Query: 117 PRTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSD 176
P G G P PQGV G + S A G R P S+
Sbjct: 844 PPGGSGPAGPPG-PQGVKGERGSPGGPGAA---------------GFPGARGLPGPPGSN 887
Query: 177 PNPRSPLPQGDP 188
NP P P G P
Sbjct: 888 GNPGPPGPSGSP 899
Score = 29.6 bits (65), Expect = 2.4
Identities = 40/149 (26%), Positives = 53/149 (35%), Gaps = 33/149 (22%)
Query: 65 PLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWER-----PGLGTPRT 119
P PG+ G + G+ GAQG G LG A + R PG+ PR
Sbjct: 914 PGSPGVSGPKGDAGQPGEKGSPGAQGPP----GAPGPLGIAGITGARGLAGPPGMPGPRG 969
Query: 120 GPG-----------------AERRPCLPQGVPGAKLSASDAS-----VAETIIQRTKLPL 157
PG ER P PQG+PG +A + ++ + R P
Sbjct: 970 SPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSP- 1028
Query: 158 LLQTADRGRRTSGNGPTSDPNPRSPLPQG 186
DRG S P + +P P P G
Sbjct: 1029 -GGKGDRGENGSPGAPGAPGHPGPPGPVG 1056
Score = 28.5 bits (62), Expect = 5.4
Identities = 30/121 (24%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 68 PGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTGPGAERRP 127
PG +G R G+ G +G G G + ++ +G+P GP R P
Sbjct: 1085 PGPQGPRGDKGETGERGAAGIKGHRGF-PGNPGAPGSPGPAGQQGAIGSP--GPAGPRGP 1141
Query: 128 CLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPRSPLPQGD 187
P G PG ++ R +RG R S P P P P G
Sbjct: 1142 VGPSGPPGKDGTSGHPGPIGPPGPR---------GNRGERGSEGSPGHPGQPGPPGPPGA 1192
Query: 188 P 188
P
Sbjct: 1193 P 1193
Score = 28.1 bits (61), Expect = 7.0
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 61 PQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTG 120
P P PG++G R G+ GA G KG G PG PR
Sbjct: 253 PAGIPGFPGMKGHRGFDGRNGEKGETGAPGL----KGENGLPGENGA----PGPMGPRGA 304
Query: 121 PGAERRPCLPQGVPGAK 137
PG RP LP G GA+
Sbjct: 305 PGERGRPGLP-GAAGAR 320
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 34.7 bits (78), Expect = 0.075
Identities = 42/116 (36%), Positives = 51/116 (43%), Gaps = 29/116 (25%)
Query: 126 RPCLPQGVP-GAKLSASDASVAETIIQRTKLPLLLQ--TADRGRRTSGNGPTSDPNPRSP 182
RP LP + GA+ +A A+ + P L TA RGRRT + PT P PR P
Sbjct: 167 RPALPAALHIGARATAGLAA-------KRAQPQLCSAGTAARGRRTRASPPT-PPRPRPP 218
Query: 183 -LPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRA--LPPPPPRHFS 235
L GD G G RV RP +R G+ RG A +PP P R S
Sbjct: 219 GLRSGDVPRG---------GARVERPTGRR------GAGGRGGAQRIPPWPLRRLS 259
Score = 28.1 bits (61), Expect = 7.0
Identities = 40/159 (25%), Positives = 54/159 (33%), Gaps = 24/159 (15%)
Query: 88 AQGGDVLGKGTRWTLGRADGSWERPGLGTPRTGPGAE-------RRPCLPQGVPGAKLSA 140
A G +L G+R G G+ G G G R PC G GA+
Sbjct: 66 AAGSAILRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGSGGRGARSRG 125
Query: 141 --SDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTS-----DPNPRSPLPQGDPRLGSA 193
S + + + P L RGR + P PR LP +G+
Sbjct: 126 CHSPSCCRSSSCAWHRWPQL-----RGREADPRASPALLICIAPRPRPALPAA-LHIGAR 179
Query: 194 EWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPPR 232
G+ +R + Q +A R RA PP PPR
Sbjct: 180 ----ATAGLAAKRAQPQLCSAGTAARGRRTRASPPTPPR 214
>gi|145301567 hypothetical protein LOC56006 [Homo sapiens]
Length = 520
Score = 34.7 bits (78), Expect = 0.075
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 20/125 (16%)
Query: 109 WERPGLGTPR--TGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGR 166
W+ PG G P+ +GPG R + + ++ + S + ++Q+T + L A+R +
Sbjct: 20 WKEPGSGGPQNLSGPGGRERDYIAPWERERRDASEETSTS--VMQKTPIILSKPPAERSK 77
Query: 167 RTSGNGPTSDPNPRSPLPQGDPRLGSAEWRPGRLGIRVRRPREQ-RVNAAFHGSDYRGRA 225
+ PT+ P +P P P I + +PRE+ + A G+
Sbjct: 78 QPPP--PTAPAAPPAPAPLEKP-------------IVLMKPREEGKGPVAVTGASTPEGT 122
Query: 226 LPPPP 230
PPPP
Sbjct: 123 APPPP 127
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 34.7 bits (78), Expect = 0.075
Identities = 39/143 (27%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 10 GTAGLSFGASRSPRETSSRLIAPTLCSFDLSKKISFAAQEAAPPWSPL---RHLPQRDPL 66
G G++ G P + +S LC +S++I+ A P +P R P P
Sbjct: 505 GVPGIT-GKPGVPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPG 563
Query: 67 IPGLEGSRSHGFNLGDSVCVGAQG--GDVLGKGTRWTLGRADGSWERPGLGTPRTGPGAE 124
PG GS H G G G GD +G + G ++ G GP +
Sbjct: 564 PPGPPGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRG------DKGAAGAGLDGPEGD 617
Query: 125 RRPCLPQGVPGAKLSASDASVAE 147
+ P PQGVPG D + E
Sbjct: 618 QGPQGPQGVPGTSKDGQDGAPGE 640
Score = 29.3 bits (64), Expect = 3.2
Identities = 43/155 (27%), Positives = 59/155 (38%), Gaps = 24/155 (15%)
Query: 61 PQRDPLIPGLEGSRSHGFNLGDSVCVGAQG--GDVLGKGTRWTLGRADGSWERPGLGTPR 118
PQ P PG+ G + ++GD G QG GDV +G G A G G+
Sbjct: 392 PQGPPGAPGVRGFQGQKGSMGDPGLPGPQGLRGDVGDRGP----GGAAGPKGDQGIAGSD 447
Query: 119 TGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPN 178
PG ++ P G+ G K S E + T+ P +G P
Sbjct: 448 GLPG-DKGELGPSGLVGPK--GESGSRGELGPKGTQGP-----------NGTSGVQGVPG 493
Query: 179 PRSPLP-QGDPRLGSAEWRPGRLGIRVRRPREQRV 212
P PL QG P + +PG G + EQR+
Sbjct: 494 PPGPLGLQGVPGVPGITGKPGVPG---KEASEQRI 525
>gi|56847616 C1q and tumor necrosis factor related protein 9B [Homo
sapiens]
Length = 333
Score = 33.9 bits (76), Expect = 0.13
Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 42/196 (21%)
Query: 29 LIAPTLCSFDLSKKISFAAQEAAPPWSPLRH-LPQRDPLIPGLEGSRSHGFNLGDSVCVG 87
L+A +C+ +++ + + P +P + LP RD G +G++ + G+ C G
Sbjct: 7 LLAIEICTGNINSQDTCRQGHPGIPGNPGHNGLPGRD----GRDGAKGDKGDAGEPGCPG 62
Query: 88 AQGGDVLG--KGTRWTLGRAD--------GSWERPGLGTPR--TGPGAERRPCLPQGVPG 135
+ G D KG R G+ + GS PG P+ GP E+ G G
Sbjct: 63 SPGKDGTSGEKGERGADGKVEAKGIKGDQGSRGSPGKHGPKGLAGPMGEKGLRGETGPQG 122
Query: 136 AKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGN----GPTSDPNPRSPL----PQGD 187
K + D T G R GN GPT P P P+ P+G+
Sbjct: 123 QKGNKGDVG---------------PTGPEGPR--GNIGPLGPTGLPGPMGPIGKPGPKGE 165
Query: 188 PRLGSAEWRPGRLGIR 203
+ PG GIR
Sbjct: 166 AGPTGPQGEPGVRGIR 181
>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 33.9 bits (76), Expect = 0.13
Identities = 49/166 (29%), Positives = 62/166 (37%), Gaps = 29/166 (17%)
Query: 53 PWSPLRHLPQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWT-----LGRAD- 106
P +P P P G GSRS + GD A G V G RW L A+
Sbjct: 53 PRAPGSAQPISAPEGRGGAGSRSR-YCHGDGKLAAAAAGTV---GPRWLPAGQCLSEAER 108
Query: 107 -------GSWERPGLGTPRTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLL 159
G+ RP +P A RP G PG+ + A S+ R PL
Sbjct: 109 PRRPEPGGARSRPVAASPAASSRARSRPESSPGAPGSSVPALLPSLPPLAAPR---PLSA 165
Query: 160 QTADRGRR------TSGNGPTSDPNPRSPLPQGD---PRLGSAEWR 196
+ R + T GNGP + P S P+G PR +AE R
Sbjct: 166 RPRLRPPQPQPLALTVGNGPRAPPAGGSRQPRGSVRGPRARAAEER 211
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 33.1 bits (74), Expect = 0.22
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 28/127 (22%)
Query: 132 GVPGAKLSASDASVAETIIQR-----TKLPLLLQT------ADRGRRTSGNGPTSDPNPR 180
GV G L++ S E I+R T+L +Q +++ GP +P+
Sbjct: 440 GVCGGALASLKMSTIERHIRRRHPGSTRLGGPVQALIAREWSEKAAHLLALGPPRPESPQ 499
Query: 181 SPLPQG--------------DPRLGSAEWR--PGRLGIRVRRPREQRVNAAFHGSDYRGR 224
P+P G +P EW P G + RP E+ + G + G
Sbjct: 500 GPIPPGTAAASDEGGGDEEEEPEEEEEEWGDVPLSPGAPLERPAEEEEDEE-DGQEPGGL 558
Query: 225 ALPPPPP 231
ALPPPPP
Sbjct: 559 ALPPPPP 565
>gi|76056882 calcium binding protein 1 isoform 3 [Homo sapiens]
Length = 370
Score = 33.1 bits (74), Expect = 0.22
Identities = 30/112 (26%), Positives = 41/112 (36%), Gaps = 21/112 (18%)
Query: 87 GAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTGPGAERRPCLPQGVPGAKLSASDASVA 146
GA+ VLG G+R R P GP R P G A +A + +A
Sbjct: 15 GARLQRVLGLGSR-----------REPRSLPAGGPAPRRTAPPPPGHASAGPAAMSSHIA 63
Query: 147 ETIIQRTKLPLLLQTADRGRRTSGNGPTSDPN----------PRSPLPQGDP 188
++ + + L A G R +GP DP P +P GDP
Sbjct: 64 KSESKTSLLKAAAAAASGGSRAPRHGPARDPGLPSRRLPGSCPATPQSSGDP 115
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 33.1 bits (74), Expect = 0.22
Identities = 40/136 (29%), Positives = 48/136 (35%), Gaps = 19/136 (13%)
Query: 68 PGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRA--DGSWERPGLGTPRTGPGAER 125
PG G R ++G VG +G KG +LG G +PG GP ER
Sbjct: 459 PGPPGPRGFKGDMGVKGPVGGRGP----KGDPGSLGPLGPQGPQGQPG----EAGPVGER 510
Query: 126 RPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPRSPLPQ 185
P P+G PG K S Q D G GP P P PQ
Sbjct: 511 GPVGPRGFPGLKGSKGSFGTGGPRGQPG------PKGDIG-PPGPEGPPGSPGPSG--PQ 561
Query: 186 GDPRLGSAEWRPGRLG 201
G P + PG+ G
Sbjct: 562 GKPGIAGKTGSPGQRG 577
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 33.1 bits (74), Expect = 0.22
Identities = 21/73 (28%), Positives = 28/73 (38%)
Query: 160 QTADRGRRTSGNGPTSDPNPRSPLPQGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGS 219
+T+ RGRR P RSP P PR P R PR + + +
Sbjct: 539 ETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 598
Query: 220 DYRGRALPPPPPR 232
+ R P PPP+
Sbjct: 599 PIQRRYSPSPPPK 611
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 32.3 bits (72), Expect = 0.37
Identities = 43/167 (25%), Positives = 58/167 (34%), Gaps = 40/167 (23%)
Query: 65 PLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGSWERPGLGTPRTGPGAE 124
P +PG G + ++G GA G KG R T G+ +R TGP E
Sbjct: 870 PGLPGYPGRQGPKGSIGFPGFPGANGE----KGGRGTPGKPGPRGQRGP-----TGPRGE 920
Query: 125 RRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPRSPLP 184
R P G PG K ++ A +RG GPT P P+ P
Sbjct: 921 RGPRGITGKPGPKGNSGGDGPAG------------PPGERG-PNGPQGPTGFPGPKG--P 965
Query: 185 QGDPRLGSAEWRPGRLGIRVRRPREQRVNAAFHGSDYRGRALPPPPP 231
G P PG+ G + ++G+ PP PP
Sbjct: 966 PGPPGKDGLPGHPGQRG----------------ETGFQGKTGPPGPP 996
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 32.3 bits (72), Expect = 0.37
Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 118 RTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGN-GPTSD 176
R+ PG C P P +LS + + P LQ + RR +G GP
Sbjct: 781 RSSPGLGY--CSPLAPPSPQLSLRTGPFQPPFLPPARRPRSLQESPAPRRAAGRLGPPGS 838
Query: 177 PNPRSPLPQGDP 188
P P SP P P
Sbjct: 839 PLPGSPRPPSPP 850
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 32.3 bits (72), Expect = 0.37
Identities = 37/139 (26%), Positives = 51/139 (36%), Gaps = 9/139 (6%)
Query: 52 PPWSPLRHLPQRDPLIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTR----WTLGRADG 107
PP + L + Q L P L G R+ + G G G G G W
Sbjct: 66 PPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPIDLWLDAPRSC 125
Query: 108 SWERPGLGTPRTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRR 167
E P G P P +++P P P A+ S A+ I + + L +AD+ +
Sbjct: 126 RMEPPD-GPP---PPPQQQPPPPPQPPQPAPQATSCSFAQNIKEESSY-CLYDSADKCPK 180
Query: 168 TSGNGPTSDPNPRSPLPQG 186
S P PR P P G
Sbjct: 181 VSATAAELAPFPRGPPPDG 199
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 32.3 bits (72), Expect = 0.37
Identities = 32/119 (26%), Positives = 38/119 (31%), Gaps = 12/119 (10%)
Query: 76 HGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-----------WERPGLGTPRTGPGAE 124
HG G +GG L W G +G WE GLG R A
Sbjct: 22 HGVGKSAGAAAGEEGGARLQATRTWPAGILEGGPQVAARGGGRGWEGGGLGARRAVTAAR 81
Query: 125 RRPC-LPQGVPGAKLSASDASVAETIIQRTKLPLLLQTADRGRRTSGNGPTSDPNPRSP 182
R + A L++ S A T L Q GRR +G G PR P
Sbjct: 82 RGEWGRARESRSAALASPRVSNAPTTPASRNPGLRAQERQSGRRAAGGGGARAEPPRVP 140
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.0 bits (71), Expect = 0.49
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 114 LGTPRTGPGAERRPCLPQGVPGAKLSASDASVAETIIQRTKLPL----LLQTADRGRRTS 169
+G PR P A RP +G + SAS+ S E + P L + A R +S
Sbjct: 187 VGLPRPAPSARPRPPT-EGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSS 245
Query: 170 GNGPTSDPNPRSPLPQGDPRLGSAEWRPGRLGIRVRRP 207
P S P P +G PR + +P G++ RP
Sbjct: 246 AT-PLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRP 282
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,400,106
Number of Sequences: 37866
Number of extensions: 687283
Number of successful extensions: 3651
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 3499
Number of HSP's gapped (non-prelim): 351
length of query: 239
length of database: 18,247,518
effective HSP length: 99
effective length of query: 140
effective length of database: 14,498,784
effective search space: 2029829760
effective search space used: 2029829760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.