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Search of human proteins with 239743005
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239743005 PREDICTED: hypothetical protein XP_002342716 [Homo
sapiens]
(254 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748985 PREDICTED: similar to hCG2030094 [Homo sapiens] 502 e-142
gi|239743005 PREDICTED: hypothetical protein XP_002342716 [Homo ... 502 e-142
gi|239754378 PREDICTED: similar to hCG2030094 [Homo sapiens] 487 e-138
gi|239752199 PREDICTED: hypothetical protein XP_002348146 [Homo ... 47 2e-05
gi|239746724 PREDICTED: hypothetical protein XP_002343820 [Homo ... 47 2e-05
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|169208604 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|113425231 PREDICTED: hypothetical protein [Homo sapiens] 39 0.004
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 37 0.013
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 37 0.022
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 37 0.022
gi|239742345 PREDICTED: hypothetical protein [Homo sapiens] 37 0.022
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 36 0.037
gi|23510368 homeobox D11 [Homo sapiens] 36 0.037
gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo ... 35 0.048
gi|239756274 PREDICTED: hypothetical protein [Homo sapiens] 35 0.082
gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo ... 35 0.082
gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo ... 35 0.082
gi|239755255 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239754006 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ... 33 0.18
gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo ... 33 0.18
gi|239748537 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo ... 33 0.18
gi|239742520 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|13489073 egl nine homolog 1 [Homo sapiens] 33 0.24
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 33 0.31
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 33 0.31
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 33 0.31
>gi|239748985 PREDICTED: similar to hCG2030094 [Homo sapiens]
Length = 254
Score = 502 bits (1292), Expect = e-142
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR
Sbjct: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
Query: 61 LLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEV 120
LLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEV
Sbjct: 61 LLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEV 120
Query: 121 AAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVR 180
AAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVR
Sbjct: 121 AAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVR 180
Query: 181 HCAVAAAARARAVLLGAAARAQLQLQLLLRPLLLQLPAELLQQLLHARQLRVQFGQRRRG 240
HCAVAAAARARAVLLGAAARAQLQLQLLLRPLLLQLPAELLQQLLHARQLRVQFGQRRRG
Sbjct: 181 HCAVAAAARARAVLLGAAARAQLQLQLLLRPLLLQLPAELLQQLLHARQLRVQFGQRRRG 240
Query: 241 RQGRTAAWQPQAEQ 254
RQGRTAAWQPQAEQ
Sbjct: 241 RQGRTAAWQPQAEQ 254
>gi|239743005 PREDICTED: hypothetical protein XP_002342716 [Homo
sapiens]
Length = 254
Score = 502 bits (1292), Expect = e-142
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR
Sbjct: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
Query: 61 LLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEV 120
LLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEV
Sbjct: 61 LLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEV 120
Query: 121 AAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVR 180
AAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVR
Sbjct: 121 AAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVR 180
Query: 181 HCAVAAAARARAVLLGAAARAQLQLQLLLRPLLLQLPAELLQQLLHARQLRVQFGQRRRG 240
HCAVAAAARARAVLLGAAARAQLQLQLLLRPLLLQLPAELLQQLLHARQLRVQFGQRRRG
Sbjct: 181 HCAVAAAARARAVLLGAAARAQLQLQLLLRPLLLQLPAELLQQLLHARQLRVQFGQRRRG 240
Query: 241 RQGRTAAWQPQAEQ 254
RQGRTAAWQPQAEQ
Sbjct: 241 RQGRTAAWQPQAEQ 254
>gi|239754378 PREDICTED: similar to hCG2030094 [Homo sapiens]
Length = 282
Score = 487 bits (1253), Expect = e-138
Identities = 254/282 (90%), Positives = 254/282 (90%), Gaps = 28/282 (9%)
Query: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR
Sbjct: 1 MTENMGLKESQLRPLGRSRERRWDTSRRAADLSSEPNTILNRKSMSSEQPQDLPLHSGPR 60
Query: 61 LLNYITHC----------------------------RPLSRALTLPGRGARGGQGGAVRR 92
LLNYITHC RPLSRALTLPGRGARGGQGGAVRR
Sbjct: 61 LLNYITHCFLWVYRKAHFGNVSFFQGAAGLERSGQGRPLSRALTLPGRGARGGQGGAVRR 120
Query: 93 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 152
AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL
Sbjct: 121 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 180
Query: 153 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL 212
PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL
Sbjct: 181 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQLLLRPL 240
Query: 213 LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ 254
LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ
Sbjct: 241 LLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTAAWQPQAEQ 282
>gi|239752199 PREDICTED: hypothetical protein XP_002348146 [Homo
sapiens]
Length = 220
Score = 47.0 bits (110), Expect = 2e-05
Identities = 47/138 (34%), Positives = 53/138 (38%), Gaps = 23/138 (16%)
Query: 79 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHG 138
GRGA QG A AA A A A + A+VA R E V A G R GQ HH
Sbjct: 76 GRGADATQGAAGTVAASAAARPQAAEAR-AEVARGERVDERVEAGVGEAQRAPVGQAHHS 134
Query: 139 HGAARLGAAGRHALPPA----PHGRRRPQEAGTRRQGVLGADDGVR----------HCAV 184
HG G+ G H A P G Q A G + A+ G R HC
Sbjct: 135 HGQQVAGSEGGHVQGAAARVLPGGHAELQRAVA--HGAVVAEVGRREERRQQPHQPHCGA 192
Query: 185 AAAARARAVLLGAAARAQ 202
RA+ ARAQ
Sbjct: 193 GVTRRAQ------GARAQ 204
>gi|239746724 PREDICTED: hypothetical protein XP_002343820 [Homo
sapiens]
Length = 220
Score = 47.0 bits (110), Expect = 2e-05
Identities = 47/138 (34%), Positives = 53/138 (38%), Gaps = 23/138 (16%)
Query: 79 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHG 138
GRGA QG A AA A A A + A+VA R E V A G R GQ HH
Sbjct: 76 GRGADATQGAAGTVAASAAARPQAAEAR-AEVARGERVDERVEAGVGEAQRAPVGQAHHS 134
Query: 139 HGAARLGAAGRHALPPA----PHGRRRPQEAGTRRQGVLGADDGVR----------HCAV 184
HG G+ G H A P G Q A G + A+ G R HC
Sbjct: 135 HGQQVAGSEGGHVQGAAARVLPGGHAELQRAVA--HGAVVAEVGRREERRQQPHQPHCGA 192
Query: 185 AAAARARAVLLGAAARAQ 202
RA+ ARAQ
Sbjct: 193 GVTRRAQ------GARAQ 204
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/170 (30%), Positives = 61/170 (35%), Gaps = 21/170 (12%)
Query: 72 SRALTLPGRGARGGQGGAVR-------RAAEAVAAVAAVQRELADVAAARRAVEEVAAEH 124
+RA+ GR G GG R AA A QR LA AAA A AA+
Sbjct: 861 ARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQG 920
Query: 125 GCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEA--GTRRQGVLGADDGVRHC 182
GA G H H G R A G P A G RR G H
Sbjct: 921 RAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQAVGARAAHQ 980
Query: 183 AVAAAARARAVLLGAAA--------RAQLQLQLLLRPLLLQLPAELLQQL 224
A A + V++ A A R +L L RP L ELL++L
Sbjct: 981 ARLAGGQVDQVVVAARAGDADGVRGRRPRRLALTARPEL----EELLERL 1026
Score = 37.0 bits (84), Expect = 0.017
Identities = 45/159 (28%), Positives = 52/159 (32%), Gaps = 33/159 (20%)
Query: 82 ARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPG---QLHHG 138
A G +GG AV R+ A RR A G +G GA G ++ HG
Sbjct: 825 AGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRVRHG 884
Query: 139 HG-----------------------------AARLGAAGRHALPPAPHGRRRPQEAGTR- 168
HG A G A R AP R RP G R
Sbjct: 885 HGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRS 944
Query: 169 RQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQL 207
R+ A G H A AA R R ARA Q +L
Sbjct: 945 RRRAAVALAGGAHPARAALGRRRGGGQAVGARAAHQARL 983
Score = 34.3 bits (77), Expect = 0.11
Identities = 33/99 (33%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 79 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAV--EEVAAEHGCRGRGAPGQLH 136
GRG R QG RR A A V DV A + + V G G+ GQ
Sbjct: 373 GRGRRRQQGRRGRRQAGPGLAKVDV-----DVLAGALGLRWQWVLVHAGQAGQPLQGQAR 427
Query: 137 HGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGA 175
H A L A PHGRR + G R G GA
Sbjct: 428 GPHRPAALAQEALRAAAARPHGRRHYRVRGLRGAGPEGA 466
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 40.8 bits (94), Expect = 0.001
Identities = 52/170 (30%), Positives = 61/170 (35%), Gaps = 21/170 (12%)
Query: 72 SRALTLPGRGARGGQGGAVR-------RAAEAVAAVAAVQRELADVAAARRAVEEVAAEH 124
+RA+ GR G GG R AA A QR LA AAA A AA+
Sbjct: 861 ARAVAAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQG 920
Query: 125 GCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEA--GTRRQGVLGADDGVRHC 182
GA G H H G R A G P A G RR G H
Sbjct: 921 RAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQAVGARAAHQ 980
Query: 183 AVAAAARARAVLLGAAA--------RAQLQLQLLLRPLLLQLPAELLQQL 224
A A + V++ A A R +L L RP L ELL++L
Sbjct: 981 ARLAGGQVDQVVVAARAGDADGVRGRRPRRLALTARPEL----EELLERL 1026
Score = 37.0 bits (84), Expect = 0.017
Identities = 45/159 (28%), Positives = 52/159 (32%), Gaps = 33/159 (20%)
Query: 82 ARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPG---QLHHG 138
A G +GG AV R+ A RR A G +G GA G ++ HG
Sbjct: 825 AGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRVRHG 884
Query: 139 HG-----------------------------AARLGAAGRHALPPAPHGRRRPQEAGTR- 168
HG A G A R AP R RP G R
Sbjct: 885 HGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRS 944
Query: 169 RQGVLGADDGVRHCAVAAAARARAVLLGAAARAQLQLQL 207
R+ A G H A AA R R ARA Q +L
Sbjct: 945 RRRAAVALAGGAHPARAALGRRRGGGQAVGARAAHQARL 983
Score = 34.3 bits (77), Expect = 0.11
Identities = 33/99 (33%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 79 GRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAV--EEVAAEHGCRGRGAPGQLH 136
GRG R QG RR A A V DV A + + V G G+ GQ
Sbjct: 373 GRGRRRQQGRRGRRQAGPGLAKVDV-----DVLAGALGLRWQWVLVHAGQAGQPLQGQAR 427
Query: 137 HGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGA 175
H A L A PHGRR + G R G GA
Sbjct: 428 GPHRPAALAQEALRAAAARPHGRRHYRVRGLRGAGPEGA 466
>gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 38.9 bits (89), Expect = 0.004
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 133 GQLHHGHGAAR--------LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAV 184
G L G G A+ LG RH LP PH R R + R G LG+ G R +
Sbjct: 114 GFLEEGSGPAQDRDRRGLTLGRRDRHCLP-IPHRRLRRDPSAASRAGRLGSPLGYRPRLL 172
Query: 185 AAAARARAVLLGAAARAQ-LQLQLLLRPLL 213
AAAA A A + AA + L L L PLL
Sbjct: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLL 202
>gi|113425231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 38.9 bits (89), Expect = 0.004
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 133 GQLHHGHGAAR--------LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAV 184
G L G G A+ LG RH LP PH R R + R G LG+ G R +
Sbjct: 114 GFLEEGSGPAQDRDRRGLTLGRRDRHCLP-IPHRRLRRDPSAASRAGRLGSPLGYRPRLL 172
Query: 185 AAAARARAVLLGAAARAQ-LQLQLLLRPLL 213
AAAA A A + AA + L L L PLL
Sbjct: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLL 202
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 37.4 bits (85), Expect = 0.013
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
Query: 38 TILNRKSMSSEQPQDLPL------HSGPRLLNYITHCRPLSRALTLPGRGARGGQGGAVR 91
T+L ++ + P +P P L + P RA T G GARGG+ G VR
Sbjct: 1915 TLLAKQHKTQRSPVRIPFMQRPARRGPPPLARAVPEPGPRGRAGTEAGPGARGGRLGLVR 1974
Query: 92 RAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHA 151
VA+ + E +D + RR + + G R R + +A GA+ R
Sbjct: 1975 -----VASALSSGSESSDRSGFRRQLTFIKESPGLRRRRSELSSAESAASAPQGASPRRG 2029
Query: 152 LPPAP 156
P P
Sbjct: 2030 RPALP 2034
Score = 28.5 bits (62), Expect = 5.9
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 74 ALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCR------ 127
A T P R RGG+ + EA A A + VA + VE+++A H
Sbjct: 817 ARTPPTR--RGGKEAEKDTSGEAAVAAKAKAKLALAVARIDQLVEDISALHTSSDDSFSL 874
Query: 128 GRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVL 173
G PGQ A R G A + P G RR EAG+R +L
Sbjct: 875 SSGDPGQ-----EAPREGRAQSCSPCRGPEGGRR--EAGSRAHPLL 913
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 36.6 bits (83), Expect = 0.022
Identities = 50/167 (29%), Positives = 64/167 (38%), Gaps = 18/167 (10%)
Query: 85 GQGGAVRRAAEAVAAVAAVQRELADVAAARR-AVEEVAAEHGCRGRGAPGQLHHGHGAAR 143
G+GG RRAA+ + + L AA R +E A RG+ P AAR
Sbjct: 150 GRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLA---LRGQCGP--------AAR 198
Query: 144 LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQL 203
G A + L AP R AG G++ G AAA R + A +
Sbjct: 199 RGCA-QEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVV 257
Query: 204 QLQLLLR----PLLLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTA 246
Q LR P LL +P+ + A R F R RGR G A
Sbjct: 258 QKASYLRPKNLPRLLSMPSAAARP-CGAALPRSGFSGRPRGRGGAAA 303
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 36.6 bits (83), Expect = 0.022
Identities = 50/167 (29%), Positives = 64/167 (38%), Gaps = 18/167 (10%)
Query: 85 GQGGAVRRAAEAVAAVAAVQRELADVAAARR-AVEEVAAEHGCRGRGAPGQLHHGHGAAR 143
G+GG RRAA+ + + L AA R +E A RG+ P AAR
Sbjct: 150 GRGGRRRRAADTLFQLGPAWPALPAPAAGRALGTDEPLA---LRGQCGP--------AAR 198
Query: 144 LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARAVLLGAAARAQL 203
G A + L AP R AG G++ G AAA R + A +
Sbjct: 199 RGCA-QEQLRNAPWAPRAHSPAGRLALGLIAPRRGAGRAGAGAAACGRRGRIAAPLSGVV 257
Query: 204 QLQLLLR----PLLLQLPAELLQQLLHARQLRVQFGQRRRGRQGRTA 246
Q LR P LL +P+ + A R F R RGR G A
Sbjct: 258 QKASYLRPKNLPRLLSMPSAAARP-CGAALPRSGFSGRPRGRGGAAA 303
>gi|239742345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 358
Score = 36.6 bits (83), Expect = 0.022
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 78 PGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAAR-RAVEEVAAEHGCRGRGAPGQL 135
P RGARGG+ A+ A+ AV +R A++++AR R E G GR A L
Sbjct: 292 PDRGARGGKDAAIHLASGFSVAVPKPRRLTAELSSARGRPAHEAGTRGGTEGRAAAATL 350
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 35.8 bits (81), Expect = 0.037
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 41 NRKSMSSEQPQDLPLHSG-PRLLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAA 99
N K + LP +G P+L N L+ + G+GA+GG+ +R + +AA
Sbjct: 1087 NNKPKEEKSVLILPPRAGTPKLFN-----AALAMTGKMGGKGAKGGKLAHLRARLKELAA 1141
Query: 100 V--AAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHALPPAPH 157
+ AA Q+EL + A + + V+ G G AP Q H AA A R PP P
Sbjct: 1142 LEAAAKQQELVEQAKSSQDVK------GEEGSAAPDQHTHPKEAATDPPAPR--TPPEPP 1193
Query: 158 G 158
G
Sbjct: 1194 G 1194
>gi|23510368 homeobox D11 [Homo sapiens]
Length = 338
Score = 35.8 bits (81), Expect = 0.037
Identities = 35/87 (40%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 78 PGRGARGGQGG--------AVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGR 129
PG G GG GG A AA A A AA+QREL A R V A E C
Sbjct: 93 PGGGG-GGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVC--- 148
Query: 130 GAPGQLHHGHGAAR--LGAAGRHALPP 154
APG H GAA A GR+ + P
Sbjct: 149 AAPGPPHGPAGAASNFYSAVGRNGILP 175
>gi|239742740 PREDICTED: hypothetical protein XP_002342615 [Homo
sapiens]
Length = 159
Score = 35.4 bits (80), Expect = 0.048
Identities = 42/129 (32%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 93 AAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHHGHGAARLGAAGRHAL 152
AA A +A V A ARR V V G G L G G+ RL +H
Sbjct: 12 AAGPAAPLALVTARAVTEAVARRIVSSVRPPGRAPGPGTLFLL--GKGSPRLA---QHPA 66
Query: 153 PPAPHGRRRPQEAGTRRQGVLGADDGVRHCAVAAAARARA-VLLGAAARAQLQLQLLLRP 211
HG R P+ +G+ +GV G H AAA+ RA V + AQ Q P
Sbjct: 67 ARRSHGSRLPRTSGSPEEGVSG------HGPAAAASLPRAQVPTPPPSHAQPQPLQRTLP 120
Query: 212 LLLQLPAEL 220
LPA L
Sbjct: 121 PPTSLPAAL 129
>gi|239756274 PREDICTED: hypothetical protein [Homo sapiens]
Length = 775
Score = 34.7 bits (78), Expect = 0.082
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 64 YITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAE 123
Y HC+P ++ PG R G A +A+ AVA + +V A VE
Sbjct: 99 YQQHCQPHTQRDGHPGEAGRQAHGELAAAAHKAIRAVAH-KGVCGEVGVAGGPVEA---- 153
Query: 124 HGCRGRGAPGQLHHGHGAARLGAAGRH 150
G RG G G H A G AG H
Sbjct: 154 -GTRGTGIDGCPHLTASAREAGRAGAH 179
>gi|239750811 PREDICTED: hypothetical protein XP_002347568 [Homo
sapiens]
Length = 765
Score = 34.7 bits (78), Expect = 0.082
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 64 YITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAE 123
Y HC+P ++ PG R G A +A+ AVA + +V A VE
Sbjct: 88 YQQHCQPHTQRDGHPGEAGRQAHGELAAAAHKAIRAVAH-KGVCGEVGVAGGPVEA---- 142
Query: 124 HGCRGRGAPGQLHHGHGAARLGAAGRH 150
G RG G G H A G AG H
Sbjct: 143 -GTRGTGIDGCPHLTASAREAGRAGAH 168
>gi|239745171 PREDICTED: hypothetical protein XP_002343379 [Homo
sapiens]
Length = 765
Score = 34.7 bits (78), Expect = 0.082
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 64 YITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAE 123
Y HC+P ++ PG R G A +A+ AVA + +V A VE
Sbjct: 88 YQQHCQPHTQRDGHPGEAGRQAHGELAAAAHKAIRAVAH-KGVCGEVGVAGGPVEA---- 142
Query: 124 HGCRGRGAPGQLHHGHGAARLGAAGRH 150
G RG G G H A G AG H
Sbjct: 143 -GTRGTGIDGCPHLTASAREAGRAGAH 168
>gi|239755255 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 33.5 bits (75), Expect = 0.18
Identities = 43/142 (30%), Positives = 54/142 (38%), Gaps = 23/142 (16%)
Query: 54 PLHSGPRLLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAA 113
P H+ P+ H R GRG G +RAA+AV A R A A
Sbjct: 140 PGHAAPQ-----AHGRGARGIHAARGRGVEAAAGAGAQRAAQAVGAGG---RSHVAPAGA 191
Query: 114 RRAVEEVAAEH---GCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQ 170
R A AAEH G RG G PG GHG GR G +EA +
Sbjct: 192 RPARGARAAEHPAVGGRGHG-PG----GHGCGGWRWPGRRRW----RGLAPGEEA---NE 239
Query: 171 GVLGADDGVRHCAVAAAARARA 192
G +G G ++A R+ +
Sbjct: 240 GAVGVGGGSAAASLARGPRSES 261
>gi|239754006 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 33.5 bits (75), Expect = 0.18
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 78 PGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHH 137
PG G RGG+G V A+ AA ELA A R A + VA + G GA ++H
Sbjct: 122 PG-GNRGGRGRVVLLGAQRGAA-----HELAVHAEQRAAHKHVAEDGGENEEGAEARVHV 175
Query: 138 GHGAARLGAAG 148
G G R G
Sbjct: 176 GVGGVRRHVGG 186
>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
sapiens]
Length = 944
Score = 33.5 bits (75), Expect = 0.18
Identities = 59/186 (31%), Positives = 72/186 (38%), Gaps = 38/186 (20%)
Query: 67 HCRPLSRALTLPGRGA------RGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEV 120
H R LS PGRG + G +R E A AA +R + A V
Sbjct: 547 HLRSLSLRGRAPGRGLFHVALLMRQEAGQLR---EGAVAAAAAER----LPAGSPVAVLV 599
Query: 121 AAEHGCRGRG-APGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGV 179
A E R G A GQ G AR G G GRR ++ G G LG G
Sbjct: 600 AGEPSHRPEGLAAGQT----GKARRGGGG---------GRRGLRQRGRWLVG-LGRLGG- 644
Query: 180 RHCAVAAAARARAVLLGAAARAQLQLQLLLRPLLLQLPAEL--LQQLLHARQLRVQFGQR 237
C + R +G AR LQ QLL LL A + L + L RQ ++ R
Sbjct: 645 --CLLGLGRR-----IGPGARLVLQEQLLAAESLLAAIAAVHQLHRGLRRRQKELRHHGR 697
Query: 238 RRGRQG 243
RGR+G
Sbjct: 698 GRGRRG 703
>gi|239749748 PREDICTED: hypothetical protein XP_002347156 [Homo
sapiens]
Length = 446
Score = 33.5 bits (75), Expect = 0.18
Identities = 43/142 (30%), Positives = 54/142 (38%), Gaps = 23/142 (16%)
Query: 54 PLHSGPRLLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAA 113
P H+ P+ H R GRG G +RAA+AV A R A A
Sbjct: 289 PGHAAPQ-----AHGRGARGIHAARGRGVEAAAGAGAQRAAQAVGAGG---RSHVAPAGA 340
Query: 114 RRAVEEVAAEH---GCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQ 170
R A AAEH G RG G PG GHG GR G +EA +
Sbjct: 341 RPARGARAAEHPAVGGRGHG-PG----GHGCGGWRWPGRRRW----RGLAPGEEA---NE 388
Query: 171 GVLGADDGVRHCAVAAAARARA 192
G +G G ++A R+ +
Sbjct: 389 GAVGVGGGSAAASLARGPRSES 410
>gi|239748537 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 33.5 bits (75), Expect = 0.18
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 78 PGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHH 137
PG G RGG+G V A+ AA ELA A R A + VA + G GA ++H
Sbjct: 122 PG-GNRGGRGRVVLLGAQRGAA-----HELAVHAEQRAAHKHVAEDGGENEEGAEARVHV 175
Query: 138 GHGAARLGAAG 148
G G R G
Sbjct: 176 GVGGVRRHVGG 186
>gi|239744003 PREDICTED: hypothetical protein XP_002343004 [Homo
sapiens]
Length = 446
Score = 33.5 bits (75), Expect = 0.18
Identities = 43/142 (30%), Positives = 54/142 (38%), Gaps = 23/142 (16%)
Query: 54 PLHSGPRLLNYITHCRPLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAA 113
P H+ P+ H R GRG G +RAA+AV A R A A
Sbjct: 289 PGHAAPQ-----AHGRGARGIHAARGRGVEAAAGAGAQRAAQAVGAGG---RSHVAPAGA 340
Query: 114 RRAVEEVAAEH---GCRGRGAPGQLHHGHGAARLGAAGRHALPPAPHGRRRPQEAGTRRQ 170
R A AAEH G RG G PG GHG GR G +EA +
Sbjct: 341 RPARGARAAEHPAVGGRGHG-PG----GHGCGGWRWPGRRRW----RGLAPGEEA---NE 388
Query: 171 GVLGADDGVRHCAVAAAARARA 192
G +G G ++A R+ +
Sbjct: 389 GAVGVGGGSAAASLARGPRSES 410
>gi|239742520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 486
Score = 33.5 bits (75), Expect = 0.18
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 78 PGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAAARRAVEEVAAEHGCRGRGAPGQLHH 137
PG G RGG+G V A+ AA ELA A R A + VA + G GA ++H
Sbjct: 122 PG-GNRGGRGRVVLLGAQRGAA-----HELAVHAEQRAAHKHVAEDGGENEEGAEARVHV 175
Query: 138 GHGAARLGAAG 148
G G R G
Sbjct: 176 GVGGVRRHVGG 186
>gi|13489073 egl nine homolog 1 [Homo sapiens]
Length = 426
Score = 33.1 bits (74), Expect = 0.24
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 129 RGAPGQLHHGHGAAR-LGAAGRHALPPAPHGRRRPQEAGTRR--------QGVLGADDGV 179
+G+ G L HG G + G A A+PP G R P++A RR +G + A
Sbjct: 59 QGSEGALGHGVGPHQHSGPAPPAAVPPPRAGAREPRKAAARRDNASGDAAKGKVKAKPPA 118
Query: 180 RHCAVAAAARARAVLLGAAARAQLQ 204
A A+ RA A G+A A+ +
Sbjct: 119 DPAAAASPCRAAAGGQGSAVAAEAE 143
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 32.7 bits (73), Expect = 0.31
Identities = 48/145 (33%), Positives = 55/145 (37%), Gaps = 19/145 (13%)
Query: 72 SRALTLPGRGARGGQ------GGAVRRAAEAVAAV--AAVQRELADV--AAARRAVEEVA 121
SR T GR RG G R A AA+ AAV R L + AAA R E
Sbjct: 64 SRGRTERGRVERGADHQERPAGAPAHRPVPAAAAILRAAVHRVLRVLRAAAAVRDAERGL 123
Query: 122 AEHGCRGRGAPG-QLHHGHGAARLGAAGRHALPPAPHGRRRPQ-----EAGTRRQGVLGA 175
G R P QL GAA L +AG P G RP T +
Sbjct: 124 RREGPRRHAPPRKQLRGRRGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATPLLLEGRS 183
Query: 176 DDGVRHCAVAAAARARAVLLGAAAR 200
+ R CAV+ +A LLGA R
Sbjct: 184 EPSTRACAVSG---GQAALLGAHVR 205
Score = 28.9 bits (63), Expect = 4.5
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 70 PLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAA--ARRAVEEVAAEHGCR 127
PL+ L L GR + AV + A + A R D AA A RA ++ A G R
Sbjct: 172 PLATPLLLEGRSEPSTRACAV--SGGQAALLGAHVRPAPDRAARCAPRA-KKAGANAGAR 228
Query: 128 GRGAPGQLHHGHGAARLGAAGRHALPPAPHGRR-RPQEAGTRRQGVLGA 175
G+G GAA PP GRR P+ A R+ +LGA
Sbjct: 229 GQGR-------------GAAAGPERPPHVQGRRPAPRGAVGARRALLGA 264
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.31
Identities = 48/145 (33%), Positives = 55/145 (37%), Gaps = 19/145 (13%)
Query: 72 SRALTLPGRGARGGQ------GGAVRRAAEAVAAV--AAVQRELADV--AAARRAVEEVA 121
SR T GR RG G R A AA+ AAV R L + AAA R E
Sbjct: 59 SRGRTERGRVERGADHQERPAGAPAHRPVPAAAAILRAAVHRVLRVLRAAAAVRDAERGL 118
Query: 122 AEHGCRGRGAPG-QLHHGHGAARLGAAGRHALPPAPHGRRRPQ-----EAGTRRQGVLGA 175
G R P QL GAA L +AG P G RP T +
Sbjct: 119 RREGPRRHAPPRKQLRGRRGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATPLLLEGRS 178
Query: 176 DDGVRHCAVAAAARARAVLLGAAAR 200
+ R CAV+ +A LLGA R
Sbjct: 179 EPSTRACAVSG---GQAALLGAHVR 200
Score = 28.9 bits (63), Expect = 4.5
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 70 PLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAA--ARRAVEEVAAEHGCR 127
PL+ L L GR + AV + A + A R D AA A RA ++ A G R
Sbjct: 167 PLATPLLLEGRSEPSTRACAV--SGGQAALLGAHVRPAPDRAARCAPRA-KKAGANAGAR 223
Query: 128 GRGAPGQLHHGHGAARLGAAGRHALPPAPHGRR-RPQEAGTRRQGVLGA 175
G+G GAA PP GRR P+ A R+ +LGA
Sbjct: 224 GQGR-------------GAAAGPERPPHVQGRRPAPRGAVGARRALLGA 259
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.31
Identities = 48/145 (33%), Positives = 55/145 (37%), Gaps = 19/145 (13%)
Query: 72 SRALTLPGRGARGGQ------GGAVRRAAEAVAAV--AAVQRELADV--AAARRAVEEVA 121
SR T GR RG G R A AA+ AAV R L + AAA R E
Sbjct: 59 SRGRTERGRVERGADHQERPAGAPAHRPVPAAAAILRAAVHRVLRVLRAAAAVRDAERGL 118
Query: 122 AEHGCRGRGAPG-QLHHGHGAARLGAAGRHALPPAPHGRRRPQ-----EAGTRRQGVLGA 175
G R P QL GAA L +AG P G RP T +
Sbjct: 119 RREGPRRHAPPRKQLRGRRGAAGLVSAGHLGREPPRGGGLRPPALVPVPLATPLLLEGRS 178
Query: 176 DDGVRHCAVAAAARARAVLLGAAAR 200
+ R CAV+ +A LLGA R
Sbjct: 179 EPSTRACAVSG---GQAALLGAHVR 200
Score = 28.9 bits (63), Expect = 4.5
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 19/109 (17%)
Query: 70 PLSRALTLPGRGARGGQGGAVRRAAEAVAAVAAVQRELADVAA--ARRAVEEVAAEHGCR 127
PL+ L L GR + AV + A + A R D AA A RA ++ A G R
Sbjct: 167 PLATPLLLEGRSEPSTRACAV--SGGQAALLGAHVRPAPDRAARCAPRA-KKAGANAGAR 223
Query: 128 GRGAPGQLHHGHGAARLGAAGRHALPPAPHGRR-RPQEAGTRRQGVLGA 175
G+G GAA PP GRR P+ A R+ +LGA
Sbjct: 224 GQGR-------------GAAAGPERPPHVQGRRPAPRGAVGARRALLGA 259
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,888,153
Number of Sequences: 37866
Number of extensions: 458921
Number of successful extensions: 2756
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 2589
Number of HSP's gapped (non-prelim): 293
length of query: 254
length of database: 18,247,518
effective HSP length: 100
effective length of query: 154
effective length of database: 14,460,918
effective search space: 2226981372
effective search space used: 2226981372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.