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Search of human proteins with 239742728
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
(93 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens] 197 2e-51
gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens] 197 2e-51
gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens] 197 2e-51
gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre... 102 9e-23
gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre... 102 9e-23
gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens] 92 7e-20
gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ... 90 4e-19
gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ... 90 4e-19
gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens] 90 4e-19
gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h... 86 5e-18
gi|239754793 PREDICTED: similar to Small ubiquitin-related modif... 84 2e-17
gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ... 84 2e-17
gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ... 84 2e-17
gi|239509111 PREDICTED: similar to Small ubiquitin-related modif... 84 2e-17
gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre... 40 3e-04
gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec... 40 3e-04
gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre... 29 0.71
gi|118572606 hemicentin 1 [Homo sapiens] 29 0.93
gi|148536855 coatomer protein complex, subunit alpha isoform 1 [... 29 0.93
gi|148536853 coatomer protein complex, subunit alpha isoform 2 [... 29 0.93
gi|11968023 zinc finger protein 106 homolog [Homo sapiens] 26 6.0
gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo ... 26 7.9
gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo ... 26 7.9
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 26 7.9
>gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 197 bits (501), Expect = 2e-51
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60
MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND
Sbjct: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60
Query: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE
Sbjct: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 197 bits (501), Expect = 2e-51
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60
MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND
Sbjct: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60
Query: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE
Sbjct: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens]
Length = 93
Score = 197 bits (501), Expect = 2e-51
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60
MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND
Sbjct: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60
Query: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE
Sbjct: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
>gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b
precursor [Homo sapiens]
Length = 71
Score = 102 bits (253), Expect = 9e-23
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
MADEKPKEGVKTENNDHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 49
>gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a
precursor [Homo sapiens]
Length = 95
Score = 102 bits (253), Expect = 9e-23
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
MADEKPKEGVKTENNDHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 49
>gi|48928058 small ubiquitin-like modifier protein 3 [Homo
sapiens]
Length = 103
Score = 92.4 bits (228), Expect = 7e-20
Identities = 45/49 (91%), Positives = 47/49 (95%), Gaps = 1/49 (2%)
Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
M++EKPKEGVKTEN DHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE
Sbjct: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 48
>gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3
homolog 2 [Homo sapiens]
Length = 206
Score = 89.7 bits (221), Expect = 4e-19
Identities = 41/49 (83%), Positives = 46/49 (93%)
Query: 43 LTMADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAY 91
L +ADEKPKEG++TEN DHINLKVAGQ+GSV QF+IKRHTPLSKLMKAY
Sbjct: 134 LAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY 182
>gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo
sapiens]
Length = 164
Score = 89.7 bits (221), Expect = 4e-19
Identities = 41/49 (83%), Positives = 46/49 (93%)
Query: 43 LTMADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAY 91
L +ADEKPKEG++TEN DHINLKVAGQ+GSV QF+IKRHTPLSKLMKAY
Sbjct: 92 LAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY 140
>gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens]
Length = 95
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/49 (87%), Positives = 45/49 (91%)
Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
MA+EKP E VKTENN+HINLKVAGQDGSV QFKIKR TPLSKLMKAYCE
Sbjct: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCE 49
>gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3
homolog 2 [Homo sapiens]
Length = 70
Score = 86.3 bits (212), Expect = 5e-18
Identities = 42/49 (85%), Positives = 45/49 (91%), Gaps = 1/49 (2%)
Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
MAD+KP+EGVKT+NN HINLKV GQ GSV QFKIKRHTPLSKLMKAYCE
Sbjct: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE 48
>gi|239754793 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 84.3 bits (207), Expect = 2e-17
Identities = 39/49 (79%), Positives = 42/49 (85%)
Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49
>gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo
sapiens]
Length = 103
Score = 84.3 bits (207), Expect = 2e-17
Identities = 39/49 (79%), Positives = 42/49 (85%)
Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49
>gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo
sapiens]
Length = 103
Score = 84.3 bits (207), Expect = 2e-17
Identities = 39/49 (79%), Positives = 42/49 (85%)
Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49
>gi|239509111 PREDICTED: similar to Small ubiquitin-related
modifier 2 [Homo sapiens]
Length = 103
Score = 84.3 bits (207), Expect = 2e-17
Identities = 39/49 (79%), Positives = 42/49 (85%)
Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+
Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49
>gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
M+D++ K + + ++I LKV GQD S FK+K T L KL ++YC+
Sbjct: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53
>gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a
precursor [Homo sapiens]
Length = 101
Score = 40.4 bits (93), Expect = 3e-04
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
M+D++ K + + ++I LKV GQD S FK+K T L KL ++YC+
Sbjct: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53
>gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b
precursor [Homo sapiens]
Length = 76
Score = 29.3 bits (64), Expect = 0.71
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 66 VAGQDGSVAQFKIKRHTPLSKLMKAYCE 93
++ QD S FK+K T L KL ++YC+
Sbjct: 1 MSDQDSSEIHFKVKMTTHLKKLKESYCQ 28
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 31 LFCEAAAEETPVLTMADEKPKEGVKTENNDHINLKVAGQ 69
L C+AA +P+LT K+GV + ND+I ++ G+
Sbjct: 1661 LECKAAGNPSPILTWL----KDGVPVKANDNIRIEAGGK 1695
>gi|148536855 coatomer protein complex, subunit alpha isoform 1
[Homo sapiens]
Length = 1233
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 47 DEKPKEGVKTENNDH-----------INLKVAGQDGSVAQFKIKRHTP 83
D + GV+T DH +NL AG DG + FK++R P
Sbjct: 277 DMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERP 324
>gi|148536853 coatomer protein complex, subunit alpha isoform 2
[Homo sapiens]
Length = 1224
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 47 DEKPKEGVKTENNDH-----------INLKVAGQDGSVAQFKIKRHTP 83
D + GV+T DH +NL AG DG + FK++R P
Sbjct: 277 DMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERP 324
>gi|11968023 zinc finger protein 106 homolog [Homo sapiens]
Length = 1883
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 52 EGVKTENNDHINLKVAGQDGSVAQFKIKRHTP 83
E T+ D KV+G++GS A+ K +R TP
Sbjct: 320 ESQTTKQADTATSKVSGKNGSAAREKPRRWTP 351
>gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo
sapiens]
Length = 259
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 17 SWCCLCACLVRTWYLFCEAAAEETPVLTMADEKP 50
+WC +C W C A A++ + A P
Sbjct: 102 AWCTICCTTFMMWLSTCRATAQQERLCQGASPPP 135
>gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo
sapiens]
Length = 259
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 17 SWCCLCACLVRTWYLFCEAAAEETPVLTMADEKP 50
+WC +C W C A A++ + A P
Sbjct: 102 AWCTICCTTFMMWLSTCRATAQQERLCQGASPPP 135
>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
Length = 951
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Query: 29 WYLFCEAAAEETPVLTMA----DEKPKEGVKTENNDHINLKVAGQDGSV---AQFKIKRH 81
+Y F + A +E +A DEK K GV ++N D + +DG+ + F K+
Sbjct: 252 YYKFIQKAMKEGRYTVLAENKSDEKKKSGVSSDNEDDDD----EEDGNYLHPSLFASKKC 307
Query: 82 TPLSKLMK 89
L +LMK
Sbjct: 308 NRLEELMK 315
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.129 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,408,662
Number of Sequences: 37866
Number of extensions: 122221
Number of successful extensions: 338
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 25
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.