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Search of human proteins with 239742421
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
sapiens]
(272 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748460 PREDICTED: hypothetical protein [Homo sapiens] 562 e-160
gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo ... 562 e-160
gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo ... 297 8e-81
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 51 1e-06
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 48 8e-06
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 45 5e-05
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 44 2e-04
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 44 2e-04
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 44 2e-04
gi|239755509 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239750019 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo ... 44 2e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 43 3e-04
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 41 0.001
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 41 0.001
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 41 0.001
gi|239508966 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo... 41 0.001
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 40 0.002
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 40 0.002
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 40 0.002
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo ... 40 0.002
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 40 0.002
gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo ... 40 0.002
>gi|239748460 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 562 bits (1449), Expect = e-160
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP
Sbjct: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
Query: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR
Sbjct: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
Query: 121 LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF 180
LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF
Sbjct: 121 LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF 180
Query: 181 LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD 240
LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD
Sbjct: 181 LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD 240
Query: 241 YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH 272
YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH
Sbjct: 241 YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH 272
>gi|239742421 PREDICTED: hypothetical protein XP_002342511 [Homo
sapiens]
Length = 272
Score = 562 bits (1449), Expect = e-160
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP
Sbjct: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
Query: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR
Sbjct: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
Query: 121 LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF 180
LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF
Sbjct: 121 LPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGF 180
Query: 181 LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD 240
LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD
Sbjct: 181 LGSRRGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSD 240
Query: 241 YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH 272
YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH
Sbjct: 241 YSLSGFSLIPLPPFVVGACSLRGGGRVRTAMH 272
>gi|239753916 PREDICTED: hypothetical protein XP_002345830 [Homo
sapiens]
Length = 233
Score = 297 bits (760), Expect = 8e-81
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP
Sbjct: 1 METPGEQAGGKGADRCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAP 60
Query: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR
Sbjct: 61 HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
Query: 121 LPAAAKTTSPAVLSAVGPKAKTN 143
LPAAAKTTSPAVLSAVGPKAKTN
Sbjct: 121 LPAAAKTTSPAVLSAVGPKAKTN 143
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 50.8 bits (120), Expect = 1e-06
Identities = 70/243 (28%), Positives = 84/243 (34%), Gaps = 37/243 (15%)
Query: 45 PRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSP----- 99
PR+ G GG R + P P E P A R R RA G
Sbjct: 184 PRQEGSFGG-RPKSQPPLPQETAAPAPQPGPTAPPA-----RVREPGRAEGASREPRLRS 237
Query: 100 RASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRG-AVLSRAPPPA 158
RA+R PP P + S + SR A P+A G R L RA PP+
Sbjct: 238 RAARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPS 297
Query: 159 PCPSGALQRGGETKGRVFLFGFLGSRRGEC--AGAQAPLHLSRPSVRAR----------- 205
A G +G RRG+C AG+ P S R R
Sbjct: 298 RARQDAWGLSG--------CATVGLRRGDCDRAGSSQPPATSGNGERCRFCRRRRRRGGG 349
Query: 206 --GGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGSDYSLSGFSLIPLPPFVVGACSLRG 263
G G A+H G + GRR V + R + S G L P P V GA G
Sbjct: 350 GEGEGTHATH--GPASPPGRRHDEEVGAAVLRAGSGEGSRRGLQLTPPPRRVHGALQRFG 407
Query: 264 GGR 266
GGR
Sbjct: 408 GGR 410
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 48.1 bits (113), Expect = 8e-06
Identities = 43/137 (31%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 26 PTLRRRVPGNSTPARRARFP-----RRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREA 80
PT RRR P + P RR R P RR+ R +P R + P+ +P +
Sbjct: 554 PTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPK-- 611
Query: 81 GLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKA 140
RR A RAS +PPP R S SPP R K SP++ S
Sbjct: 612 -------RRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSS---KHR 661
Query: 141 KTNSGLRGAVLSRAPPP 157
K +S R +R+P P
Sbjct: 662 KGSSPSRSTREARSPQP 678
Score = 33.1 bits (74), Expect = 0.27
Identities = 41/171 (23%), Positives = 64/171 (37%), Gaps = 31/171 (18%)
Query: 26 PTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAE------------PLGLLADA 73
P +RR P S+ R+ P RS R H P+ P+ A +
Sbjct: 647 PVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASS 706
Query: 74 APVQREAGLGRWRWRRRA---------RAVGTCSPRASRAPPPGRPASASPPAASRLPAA 124
+P +R++ R RR + + SP++ R R S SP A++ P
Sbjct: 707 SPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKP-- 764
Query: 125 AKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPS---GALQRGGETK 172
PA S V ++ + + + +A P P PS + Q GG K
Sbjct: 765 -----PAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGGKK 810
Score = 29.6 bits (65), Expect = 2.9
Identities = 43/162 (26%), Positives = 56/162 (34%), Gaps = 26/162 (16%)
Query: 26 PTLRRRVPGNSTPA----RRARFP-----RRSGRVGGWRAQVAPHR----PAEPLGLLAD 72
P+ RRR P P RR+R P R S + G + + R P +P +
Sbjct: 321 PSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSS 380
Query: 73 AAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAV 132
R RRR R P PPP S +P ++R + + SP
Sbjct: 381 PPRKTRRLSPSASPPRRRHR------PSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGR 434
Query: 133 LSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGA-LQRGGETKG 173
S K K G +P PAP P L E KG
Sbjct: 435 TSGKVTKHK------GTEKRESPSPAPKPRKVELSESEEDKG 470
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 45.4 bits (106), Expect = 5e-05
Identities = 67/235 (28%), Positives = 78/235 (33%), Gaps = 54/235 (22%)
Query: 36 STPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG 95
+TP R PR + A P P +A AAP ARA
Sbjct: 106 ATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAP---------------ARAPR 150
Query: 96 TCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAP 155
+ A+ P PG PA P A P AA +PA AV P A AV +R P
Sbjct: 151 AAAAAATAPPSPG-PAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREP 209
Query: 156 P--------------------PAPCPSGALQRGGETKGRVFL---------FGFLGSR-- 184
P P P P G R G V L G G R
Sbjct: 210 PLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLT 269
Query: 185 RGECAGAQAPLHLSRPSVRARGGGFLASHRYGGGNLWGRRPPAWVLSQAARPSGS 239
RG G +R + G LA R G+ GR PPA +ARPS S
Sbjct: 270 RGRVQGLLEEEAAARGRLERTRLGALALPR---GDRPGRAPPA----ASARPSRS 317
Score = 33.1 bits (74), Expect = 0.27
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 11/107 (10%)
Query: 60 PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAV----GTCSPRASRAPPPGRPASASP 115
P R L L V R + G +R AR G P RAP G PA+A+
Sbjct: 66 PERTRAELEKLIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRAPR-GAPAAAA- 123
Query: 116 PAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPS 162
AA+ P A PA ++A P R A + PP+P P+
Sbjct: 124 -AAAPPPTPAPPPPPAPVAAAAPARAP----RAAAAAATAPPSPGPA 165
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 43.9 bits (102), Expect = 2e-04
Identities = 61/210 (29%), Positives = 75/210 (35%), Gaps = 39/210 (18%)
Query: 92 RAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNS-GLRGAV 150
R G+ R PP P + PA P A PA S GP+ + S G A
Sbjct: 185 RQEGSFGGRPKSQPP--LPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQ 242
Query: 151 LSRAPPPAPC-----PSGALQRG---GETKGR-----------VFLFGFLGSRRGEC--A 189
+ P P P P+ L+ G G T GR +G RRG+C A
Sbjct: 243 PAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRA 302
Query: 190 GAQAPLHLSRPSVRAR-------------GGGFLASHRYGGGNLWGRRPPAWVLSQAARP 236
G+ P S R R G G A+H G + GRR V + R
Sbjct: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH--GPASPPGRRHDEEVGAAVLRA 360
Query: 237 SGSDYSLSGFSLIPLPPFVVGACSLRGGGR 266
+ S G L P P V GA GGGR
Sbjct: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGR 390
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 43.9 bits (102), Expect = 2e-04
Identities = 61/210 (29%), Positives = 75/210 (35%), Gaps = 39/210 (18%)
Query: 92 RAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNS-GLRGAV 150
R G+ R PP P + PA P A PA S GP+ + S G A
Sbjct: 185 RQEGSFGGRPKSQPP--LPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQ 242
Query: 151 LSRAPPPAPC-----PSGALQRG---GETKGR-----------VFLFGFLGSRRGEC--A 189
+ P P P P+ L+ G G T GR +G RRG+C A
Sbjct: 243 PAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRA 302
Query: 190 GAQAPLHLSRPSVRAR-------------GGGFLASHRYGGGNLWGRRPPAWVLSQAARP 236
G+ P S R R G G A+H G + GRR V + R
Sbjct: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH--GPASPPGRRHDEEVGAAVLRA 360
Query: 237 SGSDYSLSGFSLIPLPPFVVGACSLRGGGR 266
+ S G L P P V GA GGGR
Sbjct: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGR 390
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 43.9 bits (102), Expect = 2e-04
Identities = 61/210 (29%), Positives = 75/210 (35%), Gaps = 39/210 (18%)
Query: 92 RAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNS-GLRGAV 150
R G+ R PP P + PA P A PA S GP+ + S G A
Sbjct: 185 RQEGSFGGRPKSQPP--LPQETAAPAPQPGPTAPPARPPAYESREGPRGRAESRGSGPAQ 242
Query: 151 LSRAPPPAPC-----PSGALQRG---GETKGR-----------VFLFGFLGSRRGEC--A 189
+ P P P P+ L+ G G T GR +G RRG+C A
Sbjct: 243 PAHLPLPGPAHSPAPPAPELREGRAPGSTAGRRPRPREPQAAEESGCATVGLRRGDCDRA 302
Query: 190 GAQAPLHLSRPSVRAR-------------GGGFLASHRYGGGNLWGRRPPAWVLSQAARP 236
G+ P S R R G G A+H G + GRR V + R
Sbjct: 303 GSSQPPATSGNGERCRFCRRRRRRGGGGEGEGTHATH--GPASPPGRRHDEEVGAAVLRA 360
Query: 237 SGSDYSLSGFSLIPLPPFVVGACSLRGGGR 266
+ S G L P P V GA GGGR
Sbjct: 361 GSGEGSRRGLQLTPPPRRVHGALQRFGGGR 390
>gi|239755509 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 34 GNSTPARRARFPRRSGRVGGW---RAQVAPHRPAEPLGLLADAAPVQREAGLGR----WR 86
G P++ A F R R W R+ R + A E GLG W+
Sbjct: 187 GRGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAAEFGLGGRTCVWQ 246
Query: 87 W--RRRARAVGTC-SPRA--------SRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA 135
+ RAR G +PRA SRAPP RP ASP A+ T+PA L
Sbjct: 247 GAAQHRARPAGLARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGL 306
Query: 136 VGPKAKTN 143
V P+ K++
Sbjct: 307 VQPRPKSD 314
>gi|239750019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 344
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 34 GNSTPARRARFPRRSGRVGGW---RAQVAPHRPAEPLGLLADAAPVQREAGLGR----WR 86
G P++ A F R R W R+ R + A E GLG W+
Sbjct: 187 GRGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAAEFGLGGRTCVWQ 246
Query: 87 W--RRRARAVGTC-SPRA--------SRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA 135
+ RAR G +PRA SRAPP RP ASP A+ T+PA L
Sbjct: 247 GAAQHRARPAGLARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGL 306
Query: 136 VGPKAKTN 143
V P+ K++
Sbjct: 307 VQPRPKSD 314
>gi|239744332 PREDICTED: hypothetical protein XP_002343119 [Homo
sapiens]
Length = 344
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/128 (31%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 34 GNSTPARRARFPRRSGRVGGW---RAQVAPHRPAEPLGLLADAAPVQREAGLGR----WR 86
G P++ A F R R W R+ R + A E GLG W+
Sbjct: 187 GRGPPSQAAAFSLRHSRAQPWPSGRSAARRRRRLRRRRRRGERAAAAAEFGLGGRTCVWQ 246
Query: 87 W--RRRARAVGTC-SPRA--------SRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA 135
+ RAR G +PRA SRAPP RP ASP A+ T+PA L
Sbjct: 247 GAAQHRARPAGLARAPRARPRDPAGVSRAPPRPRPHPASPAPGDGALRGAEATAPAALGL 306
Query: 136 VGPKAKTN 143
V P+ K++
Sbjct: 307 VQPRPKSD 314
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 42.7 bits (99), Expect = 3e-04
Identities = 43/141 (30%), Positives = 55/141 (39%), Gaps = 13/141 (9%)
Query: 91 ARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSA---VGPKAKTNSGLR 147
A VG+ P +S APP P S +PP + P T PAV SA P +SG+
Sbjct: 118 APGVGSAPPASSSAPPATPPTSGAPPGSG--PGPTPTPPPAVTSAPPGAPPPTPPSSGVP 175
Query: 148 GAVLSRAPPPAPCPSGALQRGGETKGRVFLFGFLGSRRGECAGAQAPLHLSRPSVRARGG 207
PP P + G +G G G + G+ G P P + GG
Sbjct: 176 TTPPQAGGPPPPPAAVPGPGPGPKQGP----GPGGPKGGKMPGGPKP--GGGPGLSTPGG 229
Query: 208 GFLASHRYGGGNLWGRR--PP 226
HR GG GR+ PP
Sbjct: 230 HPKPPHRGGGEPRGGRQHHPP 250
Score = 32.0 bits (71), Expect = 0.59
Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 197 LSRPSVRARGGGFLASHRYGGGNLWG------RRPPAWVLSQAARPSGSDYSLSGFSLIP 250
+SR R+RGGG HR GGG G PP L+Q P G SG P
Sbjct: 1 MSRDRFRSRGGGGGGFHRRGGGGGRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSG-PKPP 59
Query: 251 LPP 253
+PP
Sbjct: 60 IPP 62
Score = 30.4 bits (67), Expect = 1.7
Identities = 19/60 (31%), Positives = 22/60 (36%)
Query: 105 PPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSGA 164
PPP +P P + P S + A GP G S APP P SGA
Sbjct: 82 PPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAPPATPPTSGA 141
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 60 PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
P P+EPL +P A GR R RAR G C P RAPPPG RP +A+
Sbjct: 9 PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63
Query: 117 AASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
A R+P +T P P ++ R L PP P
Sbjct: 64 ATFRVP-ERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 41.2 bits (95), Expect = 0.001
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 56 AQVAPHRPAEP--LGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASA 113
+QV P R EP G L AP G + + RA P APP PA
Sbjct: 350 SQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPP 409
Query: 114 SPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
PPAA LP A K P PK+ + A+ + PP+P
Sbjct: 410 LPPAAPPLPCAQKAAHPPAGFTKTPKSSS-----PALKPKPNPPSP 450
Score = 28.9 bits (63), Expect = 5.0
Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 99 PRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPA 158
P PPP A PP L +SP++ + P A L+ PPP
Sbjct: 175 PLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIPT---PPDFIPPAPPLAFLAPPPPPV 231
Query: 159 PCPSGALQRGGETKG-RVFLFG---------FLGSRRGECAGAQAPLHLSRPSVRARG 206
P P+ T G R+F G L R+ E A P + P A G
Sbjct: 232 PAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 60 PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
P P+EPL +P A GR R RAR G C P RAPPPG RP +A+
Sbjct: 9 PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63
Query: 117 AASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
A R+P +T P P ++ R L PP P
Sbjct: 64 ATFRVP-ERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 41.2 bits (95), Expect = 0.001
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 56 AQVAPHRPAEP--LGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASA 113
+QV P R EP G L AP G + + RA P APP PA
Sbjct: 350 SQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPP 409
Query: 114 SPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
PPAA LP A K P PK+ + A+ + PP+P
Sbjct: 410 LPPAAPPLPCAQKAAHPPAGFTKTPKSSS-----PALKPKPNPPSP 450
Score = 28.9 bits (63), Expect = 5.0
Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 99 PRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPA 158
P PPP A PP L +SP++ + P A L+ PPP
Sbjct: 175 PLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIPT---PPDFIPPAPPLAFLAPPPPPV 231
Query: 159 PCPSGALQRGGETKG-RVFLFG---------FLGSRRGECAGAQAPLHLSRPSVRARG 206
P P+ T G R+F G L R+ E A P + P A G
Sbjct: 232 PAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289
>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 60 PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
P P+EPL +P A GR R RAR G C P RAPPPG RP +A+
Sbjct: 9 PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63
Query: 117 AASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
A R+P +T P P ++ R L PP P
Sbjct: 64 ATFRVP-ERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 41.2 bits (95), Expect = 0.001
Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 56 AQVAPHRPAEP--LGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASA 113
+QV P R EP G L AP G + + RA P APP PA
Sbjct: 350 SQVYPDRAPEPDCPGELKATAPASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPP 409
Query: 114 SPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
PPAA LP A K P PK+ + A+ + PP+P
Sbjct: 410 LPPAAPPLPCAQKAAHPPAGFTKTPKSSS-----PALKPKPNPPSP 450
Score = 28.9 bits (63), Expect = 5.0
Identities = 31/118 (26%), Positives = 40/118 (33%), Gaps = 13/118 (11%)
Query: 99 PRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPA 158
P PPP A PP L +SP++ + P A L+ PPP
Sbjct: 175 PLLLEPPPPPSMAPPPPPVLEALSPPHTLSSPSIPT---PPDFIPPAPPLAFLAPPPPPV 231
Query: 159 PCPSGALQRGGETKG-RVFLFG---------FLGSRRGECAGAQAPLHLSRPSVRARG 206
P P+ T G R+F G L R+ E A P + P A G
Sbjct: 232 PAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALG 289
>gi|239508966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 41.2 bits (95), Expect = 0.001
Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 60 PHRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVGTCSPRA--SRAPPPG-RPASASPP 116
P P+EPL +P A GR R RAR G C P RAPPPG RP +A+
Sbjct: 9 PTAPSEPLTCPMGVSP----APWGRPLRRSRARP-GPCPPEGLVPRAPPPGPRPTAAATR 63
Query: 117 AASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAP 159
A R+P +T P P ++ R L PP P
Sbjct: 64 ATFRVP-ERRTVPPCPRRPARPSQPPSAARRERALLANPPQRP 105
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 40.8 bits (94), Expect = 0.001
Identities = 56/190 (29%), Positives = 65/190 (34%), Gaps = 50/190 (26%)
Query: 27 TLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWR 86
T R PG + RR R RR +VGGW R GL
Sbjct: 80 TPRPAAPGAAPRPRRQRLRRRRAKVGGWGC--------------------ARARGLD--- 116
Query: 87 WRRRARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGL 146
RRA G SP P PG + A PAAA+ P S P+
Sbjct: 117 --RRAPGEGGRSPGGGLEPSPG-----ARGAVGAAPAAARHRKPRGRSRRAPQMP----- 164
Query: 147 RGAVLSRAPPPAPCPSGALQRGGETKGRVFLFGFLGSR----RGECAGAQAPLHLSRPSV 202
L PP P G + GG T GR G G R R GA P + PS+
Sbjct: 165 ----LRVLPPILP---GLSRAGGATGGR----GLPGRRGLPGRSGLQGAAVPPPVGVPSL 213
Query: 203 RARGGGFLAS 212
R R LA+
Sbjct: 214 RGRPWEALAT 223
>gi|33598924 scavenger receptor class A, member 3 isoform 1 [Homo
sapiens]
Length = 606
Score = 40.8 bits (94), Expect = 0.001
Identities = 46/160 (28%), Positives = 59/160 (36%), Gaps = 25/160 (15%)
Query: 21 EIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQ-----VAPHRPAEPLGLLADAAP 75
EI + T+ R PG P G VGG + + P P P G +A P
Sbjct: 447 EILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGRGPKGDPGSLGPLGPQGPQGQPGEAGP 506
Query: 76 VQREAGLGRWRW---RRRARAVGTCSPRASRAP--------PPGRPASASPPAASRLPA- 123
V +G + + + GT PR P P G P S P P
Sbjct: 507 VGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPKGDIGPPGPEGPPGSPGPSGPQGKPGI 566
Query: 124 AAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPPPAPCPSG 163
A KT SP A+GPK + G++G PP P P G
Sbjct: 567 AGKTGSPGQRGAMGPKGE--PGIQG------PPGLPGPPG 598
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 15 RCALWKEIHKGPTLRR-RVPGNSTPARRARFPRRSGRVGGWRA---QVAPHRPAEPLGLL 70
R A+ + GP+ RR R+P R R G + P+ A P +
Sbjct: 22 RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81
Query: 71 ADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
AP + G RWR R R P +RA P G P ++PPA R
Sbjct: 82 CRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRR 131
Score = 28.9 bits (63), Expect = 5.0
Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 62 RPAEPLGLLADAAPVQREAGLGRWRWRRRA--RAVGTCSPRASRAPPPGRPASASP-PAA 118
RPA GL +P + G R R R RA+G SP AP ASASP P +
Sbjct: 22 RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81
Query: 119 SR------LPAAAK---TTSPAVLSAVGPKAKTNSGLRGAVLSRAPP 156
R +P AA+ P S GP A T + GA APP
Sbjct: 82 CRRAPPRPVPGAARWRGRPEPRPGSPAGP-APTRARPLGAPGRSAPP 127
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/110 (29%), Positives = 43/110 (39%), Gaps = 4/110 (3%)
Query: 15 RCALWKEIHKGPTLRR-RVPGNSTPARRARFPRRSGRVGGWRA---QVAPHRPAEPLGLL 70
R A+ + GP+ RR R+P R R G + P+ A P +
Sbjct: 22 RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81
Query: 71 ADAAPVQREAGLGRWRWRRRARAVGTCSPRASRAPPPGRPASASPPAASR 120
AP + G RWR R R P +RA P G P ++PPA R
Sbjct: 82 CRRAPPRPVPGAARWRGRPEPRPGSPAGPAPTRARPLGAPGRSAPPARRR 131
Score = 28.9 bits (63), Expect = 5.0
Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 62 RPAEPLGLLADAAPVQREAGLGRWRWRRRA--RAVGTCSPRASRAPPPGRPASASP-PAA 118
RPA GL +P + G R R R RA+G SP AP ASASP P +
Sbjct: 22 RPAMLAGLGPGPSPRRGRLPSGGLRLRARPGRRALGLPSPLELAAPSLVPNASASPRPVS 81
Query: 119 SR------LPAAAK---TTSPAVLSAVGPKAKTNSGLRGAVLSRAPP 156
R +P AA+ P S GP A T + GA APP
Sbjct: 82 CRRAPPRPVPGAARWRGRPEPRPGSPAGP-APTRARPLGAPGRSAPP 127
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 40.4 bits (93), Expect = 0.002
Identities = 47/185 (25%), Positives = 63/185 (34%), Gaps = 39/185 (21%)
Query: 15 RCALWKEIHKGPTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLG-LLADA 73
R AL +I +G LR+ N A + + + + GG A LG L A
Sbjct: 46 RSALLADIQQGTRLRKVTQINDRSAPQIESSKGTNKEGGGSANTRGASTPPTLGDLFAGG 105
Query: 74 APVQREAGLGRWRWRRRARAVGT-------------------CSPRASR----------- 103
PV R AG + + G+ SPR
Sbjct: 106 FPVLRPAGQRDVAGGKTGQGPGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTA 165
Query: 104 -------APPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSRAPP 156
APPP P PP LP+++ +P V S GP K N + + APP
Sbjct: 166 PPRPNVPAPPPPTPPPPPPPLPPPLPSSSPIKTPLV-SPPGPLTKGNLPVVAPPVPCAPP 224
Query: 157 PAPCP 161
P P P
Sbjct: 225 PPPPP 229
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/132 (29%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
Query: 38 PARRARFPRRSGRVGGWRAQVAP--HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG 95
PA R R P + A + P RP G L PV R G W ++ G
Sbjct: 20 PAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG 79
Query: 96 TC-SPRASRAPPPGRPASASPPAASRLPAAAKTTSP-AVLSAVGPKAKTNSGLRGAVLSR 153
+P RAP P SAS P A+ P P +S V P +GL + R
Sbjct: 80 PLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPR 139
Query: 154 ----APPPAPCP 161
PPP P
Sbjct: 140 PQDGTPPPVDTP 151
Score = 31.2 bits (69), Expect = 1.0
Identities = 39/119 (32%), Positives = 43/119 (36%), Gaps = 23/119 (19%)
Query: 26 PTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGL-LADAAPVQREAGLGR 84
P L++R PG R + R R G P RP PLG L D AP G
Sbjct: 41 PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG-PLGAPLQDRAPSAHVPG--- 96
Query: 85 WRWRRRARAVGT-CSPRASRAPP----------PGRPASASPPAASRLPAAAKTTSPAV 132
+R T PR SR PP PGRPA SR P T P V
Sbjct: 97 ----SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLH---RSREPRPQDGTPPPV 148
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 40.0 bits (92), Expect = 0.002
Identities = 43/130 (33%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 4 PGEQ---AGGKGADRCALWKEIHKGPTLRRR---VPGNSTPARRA--RFPRRSGRVGGWR 55
PG Q GG G R W+ GP++R + G P+R A R R G VG W
Sbjct: 258 PGMQKRSGGGSGGQRAGGWQP---GPSVRESCIDMAGRERPSRGAGQRPQRVRGSVGPWN 314
Query: 56 AQVAPHRPAEPLGLLADAAPVQREAGL-GRWRWRRRARAVGTCSPRASRAPPPGRPASAS 114
LG +R + L W R R R VGTC P PG P + S
Sbjct: 315 LG--------SLGKKNKQETNRRGSSLRAAWSGRGRFRKVGTC-------PTPGPPDAPS 359
Query: 115 PP--AASRLP 122
PP S+LP
Sbjct: 360 PPQLRVSKLP 369
Score = 33.9 bits (76), Expect = 0.16
Identities = 47/153 (30%), Positives = 58/153 (37%), Gaps = 35/153 (22%)
Query: 73 AAPVQREAGLGRWRWRRR-----------------ARAVGTCSPRASRAPPPGRPASASP 115
A P QR + R RRR AR G RA+R PP P S
Sbjct: 67 AGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTPPRSGLD 126
Query: 116 PAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSR-APPPAPCPSGALQR-GGETKG 173
P A + +PA L+ +T +GLR + R +PP SG +R GG T+G
Sbjct: 127 P-------AVPSPTPAPLARC---RQTRAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQG 176
Query: 174 RVFLFGFLGSRRGECAGAQAPLHLSRPSVRARG 206
F G G P L RP R RG
Sbjct: 177 E-----FAGRGAGGARVTHRPGRL-RPRGRGRG 203
Score = 31.2 bits (69), Expect = 1.0
Identities = 52/205 (25%), Positives = 67/205 (32%), Gaps = 33/205 (16%)
Query: 30 RRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRR 89
RR+P TPA R G A+V+P P P L A P A L R R R
Sbjct: 87 RRLPPALTPAGPYHSARPGGGARARAARVSP--PTPPRSGLDPAVPSPTPAPLARCRQTR 144
Query: 90 RARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGL--- 146
+ T R PP R A++ + P A A G + G
Sbjct: 145 AGLRLST----GGRLSPPLRRAAS---GEWKRPGGLTQGEFAGRGAGGARVTHRPGRLRP 197
Query: 147 --RGAVLSRAPPPA------------PCPSGALQRGGETKGRVFLFGFLGSRRGECAGAQ 192
RG +R PA CP + G+ + +R G C G
Sbjct: 198 RGRGRGRARRTCPARRRGEEDLRVQDSCPQAGCRAMGQRRVLKAEGARARARGGVCFG-- 255
Query: 193 APLHLSRPSVRARGGGFLASHRYGG 217
RP ++ R GG R GG
Sbjct: 256 -----PRPGMQKRSGGGSGGQRAGG 275
>gi|239749008 PREDICTED: hypothetical protein XP_002346879 [Homo
sapiens]
Length = 180
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/132 (29%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
Query: 38 PARRARFPRRSGRVGGWRAQVAP--HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG 95
PA R R P + A + P RP G L PV R G W ++ G
Sbjct: 20 PAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG 79
Query: 96 TC-SPRASRAPPPGRPASASPPAASRLPAAAKTTSP-AVLSAVGPKAKTNSGLRGAVLSR 153
+P RAP P SAS P A+ P P +S V P +GL + R
Sbjct: 80 PLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPR 139
Query: 154 ----APPPAPCP 161
PPP P
Sbjct: 140 PQDGTPPPVDTP 151
Score = 31.2 bits (69), Expect = 1.0
Identities = 39/119 (32%), Positives = 43/119 (36%), Gaps = 23/119 (19%)
Query: 26 PTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGL-LADAAPVQREAGLGR 84
P L++R PG R + R R G P RP PLG L D AP G
Sbjct: 41 PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG-PLGAPLQDRAPSAHVPG--- 96
Query: 85 WRWRRRARAVGT-CSPRASRAPP----------PGRPASASPPAASRLPAAAKTTSPAV 132
+R T PR SR PP PGRPA SR P T P V
Sbjct: 97 ----SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLH---RSREPRPQDGTPPPV 148
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 40.0 bits (92), Expect = 0.002
Identities = 43/130 (33%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 4 PGEQ---AGGKGADRCALWKEIHKGPTLRRR---VPGNSTPARRA--RFPRRSGRVGGWR 55
PG Q GG G R W+ GP++R + G P+R A R R G VG W
Sbjct: 258 PGMQKRSGGGSGGQRAGGWQP---GPSVRESCIDMAGRERPSRGAGQRPQRVRGSVGPWN 314
Query: 56 AQVAPHRPAEPLGLLADAAPVQREAGL-GRWRWRRRARAVGTCSPRASRAPPPGRPASAS 114
LG +R + L W R R R VGTC P PG P + S
Sbjct: 315 LG--------SLGKKNKQETNRRGSSLRAAWSGRGRFRKVGTC-------PTPGPPDAPS 359
Query: 115 PP--AASRLP 122
PP S+LP
Sbjct: 360 PPQLRVSKLP 369
Score = 33.9 bits (76), Expect = 0.16
Identities = 47/153 (30%), Positives = 58/153 (37%), Gaps = 35/153 (22%)
Query: 73 AAPVQREAGLGRWRWRRR-----------------ARAVGTCSPRASRAPPPGRPASASP 115
A P QR + R RRR AR G RA+R PP P S
Sbjct: 67 AGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGARARAARVSPPTPPRSGLD 126
Query: 116 PAASRLPAAAKTTSPAVLSAVGPKAKTNSGLRGAVLSR-APPPAPCPSGALQR-GGETKG 173
P A + +PA L+ +T +GLR + R +PP SG +R GG T+G
Sbjct: 127 P-------AVPSPTPAPLARC---RQTRAGLRLSTGGRLSPPLRRAASGEWKRPGGLTQG 176
Query: 174 RVFLFGFLGSRRGECAGAQAPLHLSRPSVRARG 206
F G G P L RP R RG
Sbjct: 177 E-----FAGRGAGGARVTHRPGRL-RPRGRGRG 203
Score = 31.2 bits (69), Expect = 1.0
Identities = 52/205 (25%), Positives = 67/205 (32%), Gaps = 33/205 (16%)
Query: 30 RRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGLLADAAPVQREAGLGRWRWRR 89
RR+P TPA R G A+V+P P P L A P A L R R R
Sbjct: 87 RRLPPALTPAGPYHSARPGGGARARAARVSP--PTPPRSGLDPAVPSPTPAPLARCRQTR 144
Query: 90 RARAVGTCSPRASRAPPPGRPASASPPAASRLPAAAKTTSPAVLSAVGPKAKTNSGL--- 146
+ T R PP R A++ + P A A G + G
Sbjct: 145 AGLRLST----GGRLSPPLRRAAS---GEWKRPGGLTQGEFAGRGAGGARVTHRPGRLRP 197
Query: 147 --RGAVLSRAPPPA------------PCPSGALQRGGETKGRVFLFGFLGSRRGECAGAQ 192
RG +R PA CP + G+ + +R G C G
Sbjct: 198 RGRGRGRARRTCPARRRGEEDLRVQDSCPQAGCRAMGQRRVLKAEGARARARGGVCFG-- 255
Query: 193 APLHLSRPSVRARGGGFLASHRYGG 217
RP ++ R GG R GG
Sbjct: 256 -----PRPGMQKRSGGGSGGQRAGG 275
>gi|239743028 PREDICTED: hypothetical protein XP_002342721 [Homo
sapiens]
Length = 180
Score = 40.0 bits (92), Expect = 0.002
Identities = 39/132 (29%), Positives = 48/132 (36%), Gaps = 8/132 (6%)
Query: 38 PARRARFPRRSGRVGGWRAQVAP--HRPAEPLGLLADAAPVQREAGLGRWRWRRRARAVG 95
PA R R P + A + P RP G L PV R G W ++ G
Sbjct: 20 PAARGRLPGETLSPSPRAAALPPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG 79
Query: 96 TC-SPRASRAPPPGRPASASPPAASRLPAAAKTTSP-AVLSAVGPKAKTNSGLRGAVLSR 153
+P RAP P SAS P A+ P P +S V P +GL + R
Sbjct: 80 PLGAPLQDRAPSAHVPGSASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLHRSREPR 139
Query: 154 ----APPPAPCP 161
PPP P
Sbjct: 140 PQDGTPPPVDTP 151
Score = 31.2 bits (69), Expect = 1.0
Identities = 39/119 (32%), Positives = 43/119 (36%), Gaps = 23/119 (19%)
Query: 26 PTLRRRVPGNSTPARRARFPRRSGRVGGWRAQVAPHRPAEPLGL-LADAAPVQREAGLGR 84
P L++R PG R + R R G P RP PLG L D AP G
Sbjct: 41 PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPG-PLGAPLQDRAPSAHVPG--- 96
Query: 85 WRWRRRARAVGT-CSPRASRAPP----------PGRPASASPPAASRLPAAAKTTSPAV 132
+R T PR SR PP PGRPA SR P T P V
Sbjct: 97 ----SASRPTATPAPPRCSRRPPTTTVSRVAPSPGRPAGLH---RSREPRPQDGTPPPV 148
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,903,525
Number of Sequences: 37866
Number of extensions: 806212
Number of successful extensions: 8908
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 861
Number of HSP's that attempted gapping in prelim test: 6781
Number of HSP's gapped (non-prelim): 2576
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.