Guide to the Human Genome
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Name: LOC100130325 Sequence: fasta or formatted (251aa) NCBI GI: 239741826
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {251aa} PREDICTED: hypothetical protein
alt mRNA {251aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         28           2
 C cysteine            1.6          4           1
 D aspartate           2.0          5           1
 E glutamate           6.8         17           3
 F phenylalanine       3.6          9           1
 G glycine             8.8         22           2
 H histidine           3.2          8           1
 I isoleucine          2.4          6           1
 K lysine              5.2         13           2
 L leucine            11.2         28           2
 M methionine          0.8          2           1
 N asparagine          2.4          6           1
 P proline             2.8          7           2
 Q glutamine           3.6          9           1
 R arginine            6.0         15           3
 S serine             13.5         34           3
 T threonine           7.2         18           3
 V valine              4.8         12           1
 W tryptophan          2.4          6           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130325          1.000   PREDICTED: hypothetical protein 
LOC100130325          1.000   PREDICTED: hypothetical protein 
SFRS16                0.032   splicing factor, arginine/serine-rich 16 
MUC21                 0.023   mucin 21 
KCMF1                 0.021   potassium channel modulatory factor 1 
C4orf8                0.017   hypothetical protein LOC8603 
NRG3                  0.017   neuregulin 3 
ANKRD17               0.017   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.017   ankyrin repeat domain protein 17 isoform b 
LOC729792             0.015   PREDICTED: hypothetical protein 
LOC100131251          0.015   PREDICTED: hypothetical protein 
LOC729792             0.015   PREDICTED: hypothetical protein 
LOC100131251          0.015   PREDICTED: hypothetical protein 
LOC729792             0.015   PREDICTED: hypothetical protein 
LOC100294501          0.015   PREDICTED: hypothetical protein 
LOC100294249          0.015   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.015   PREDICTED: hypothetical protein 
LOC100294204          0.015   PREDICTED: hypothetical protein 
LOC100294136          0.015   PREDICTED: hypothetical protein 
LOC100294091          0.015   PREDICTED: hypothetical protein 
LOC730401             0.015   PREDICTED: hypothetical protein 
MAP4                  0.015   microtubule-associated protein 4 isoform 5 
MAP4                  0.015   microtubule-associated protein 4 isoform 4 
MAP4                  0.015   microtubule-associated protein 4 isoform 2 
MAP4                  0.015   microtubule-associated protein 4 isoform 1 
MUC6                  0.015   mucin 6, gastric 
ZBTB4                 0.015   zinc finger and BTB domain containing 4 
ZBTB4                 0.015   zinc finger and BTB domain containing 4 
LOC100170229          0.013   hypothetical protein LOC100170229 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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