Guide to the Human Genome
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Name: LOC100289256 Sequence: fasta or formatted (164aa) NCBI GI: 239741790
Description:

PREDICTED: hypothetical protein XP_002342301

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          8           1
 C cysteine            2.4          4           1
 D aspartate           1.8          3           1
 E glutamate           6.1         10           2
 F phenylalanine       1.2          2           1
 G glycine            11.0         18           1
 H histidine           4.3          7           1
 I isoleucine          3.0          5           1
 K lysine              1.8          3           2
 L leucine            11.6         19           2
 M methionine          1.8          3           1
 N asparagine          2.4          4           2
 P proline            16.5         27           4
 Q glutamine           3.7          6           2
 R arginine            3.0          5           1
 S serine              9.8         16           2
 T threonine           6.1         10           1
 V valine              3.0          5           1
 W tryptophan          4.9          8           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342301 
ROBO3                 0.044   roundabout, axon guidance receptor, homolog 3 
LOC100292408          0.038   PREDICTED: hypothetical protein 
E2F4                  0.032   E2F transcription factor 4 
LOC100292544          0.024   PREDICTED: hypothetical protein 
LOC100290107          0.024   PREDICTED: hypothetical protein XP_002347926 
LOC100287367          0.024   PREDICTED: hypothetical protein XP_002344193 
TROAP                 0.024   tastin isoform 1 
LOC100132062          0.021   PREDICTED: hypothetical protein 
LOC100132287          0.021   PREDICTED: hypothetical protein 
KREMEN2               0.021   kringle-containing transmembrane protein 2 isoform b...
COL8A2                0.021   collagen, type VIII, alpha 2 
ANKRD17               0.021   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.021   ankyrin repeat domain protein 17 isoform b 
SRCAP                 0.018   Snf2-related CBP activator protein 
KRBA1                 0.018   KRAB A domain containing 1 
LOC728800             0.018   PREDICTED: hypothetical protein 
LOC100132062          0.018   PREDICTED: hypothetical protein 
PLD4                  0.018   phospholipase D4 
PLXNB1                0.018   plexin B1 
PLXNB1                0.018   plexin B1 
RNF214                0.018   ring finger protein 214 
RNF214                0.018   ring finger protein 214 
NR5A1                 0.015   nuclear receptor subfamily 5, group A, member 1 [Hom...
EPN1                  0.015   epsin 1 isoform c 
EPN1                  0.015   epsin 1 isoform b 
EPN1                  0.015   epsin 1 isoform a 
DTX1                  0.015   deltex homolog 1 
KIAA1486              0.015   hypothetical protein LOC57624 
LOC642622             0.015   PREDICTED: similar to hCG1798126 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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