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Search of human proteins with 239741693
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
sapiens]
(480 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo ... 1008 0.0
gi|239753264 PREDICTED: hypothetical protein [Homo sapiens] 1005 0.0
gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo ... 922 0.0
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 35 0.15
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 35 0.15
gi|18702331 OTU domain containing 7A [Homo sapiens] 34 0.26
gi|239756693 PREDICTED: similar to coiled-coil domain containing... 33 0.44
gi|169171485 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
gi|239754361 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens] 33 0.44
gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo ... 33 0.44
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s... 33 0.44
gi|239743797 PREDICTED: similar to cell recognition molecule CAS... 33 0.44
gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo ... 33 0.44
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 33 0.57
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 33 0.57
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 33 0.57
gi|239756691 PREDICTED: hypothetical protein [Homo sapiens] 33 0.75
gi|239754993 PREDICTED: hypothetical protein [Homo sapiens] 33 0.75
gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo ... 33 0.75
gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo ... 33 0.75
gi|82830424 gon-4-like isoform a [Homo sapiens] 33 0.75
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 33 0.75
gi|124378039 SEC16 homolog A [Homo sapiens] 32 0.98
gi|169213725 PREDICTED: hypothetical protein [Homo sapiens] 32 0.98
gi|169214202 PREDICTED: hypothetical protein [Homo sapiens] 32 0.98
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 32 0.98
gi|169213543 PREDICTED: hypothetical protein [Homo sapiens] 32 0.98
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 32 0.98
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 32 1.3
>gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
sapiens]
Length = 480
Score = 1008 bits (2607), Expect = 0.0
Identities = 480/480 (100%), Positives = 480/480 (100%)
Query: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR
Sbjct: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
Query: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI
Sbjct: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
Query: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG
Sbjct: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
Query: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS
Sbjct: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
Query: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR
Sbjct: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
Query: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH
Sbjct: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
Query: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA
Sbjct: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
Query: 421 SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR 480
SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR
Sbjct: 421 SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR 480
>gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 1005 bits (2598), Expect = 0.0
Identities = 479/480 (99%), Positives = 479/480 (99%)
Query: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR
Sbjct: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
Query: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI
Sbjct: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
Query: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG
Sbjct: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
Query: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS
Sbjct: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
Query: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR
Sbjct: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
Query: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH
Sbjct: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
Query: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
PLPHRVL SSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA
Sbjct: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
Query: 421 SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR 480
SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR
Sbjct: 421 SAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEPFFGALWLR 480
>gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo
sapiens]
Length = 444
Score = 922 bits (2383), Expect = 0.0
Identities = 441/442 (99%), Positives = 441/442 (99%)
Query: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR
Sbjct: 1 MALGRRAGSSDDDKDDDNSDITEHGREPRKAVLLVVVHHVFGDLLNGRKCSWEVNGKEGR 60
Query: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI
Sbjct: 61 LAAPVRPLEKGMSLPHLYLGPHVPHVCMTSPPPISKFRSLNFNCFCQQDERVKKSFWESI 120
Query: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG
Sbjct: 121 SQLEETDDFREEGEGAGVEMLAVPTPGNGPNWAKSAIRGRSLHANRTPNTSNTYSTLRLG 180
Query: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS
Sbjct: 181 ENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQVKRLQAPGQGSPPRLYS 240
Query: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR
Sbjct: 241 VSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGLGVGEPPKDKLGDR 300
Query: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH
Sbjct: 301 SVREILQGIIPADVSDEFQALHVDQGLNELAVWKLLPSWLQAGNLSGSTLHPEREHQDDH 360
Query: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
PLPHRVL SSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA
Sbjct: 361 PLPHRVLVSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEA 420
Query: 421 SAPRPVGSRDVAAAAAEVRKTP 442
SAPRPVGSRDVAAAAAEVRKTP
Sbjct: 421 SAPRPVGSRDVAAAAAEVRKTP 442
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 35.0 bits (79), Expect = 0.15
Identities = 40/123 (32%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 348 STLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGS 407
S L P HQ P P L +S+ G+ LRL GR AG ASP + R+
Sbjct: 2 SPLRPRGPHQGGTPRP---LPASAGAQGSQARSGLRLCRTTQGRPAGGASPPP-SPRSRP 57
Query: 408 WELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPER----RHRLTRPPRA 463
G P P P A P+ + + A A R A R P R R R+ R R
Sbjct: 58 EGPGPPRPATPSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRMGRAARG 117
Query: 464 YPA 466
PA
Sbjct: 118 PPA 120
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 35.0 bits (79), Expect = 0.15
Identities = 40/123 (32%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 348 STLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGS 407
S L P HQ P P L +S+ G+ LRL GR AG ASP + R+
Sbjct: 2 SPLRPRGPHQGGTPRP---LPASAGAQGSQARSGLRLCRTTQGRPAGGASPPP-SPRSRP 57
Query: 408 WELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPER----RHRLTRPPRA 463
G P P P A P+ + + A A R A R P R R R+ R R
Sbjct: 58 EGPGPPRPATPSARRPQGLSAGVSAGPAQRSRPLQLAGPRDRAPARALHARTRMGRAARG 117
Query: 464 YPA 466
PA
Sbjct: 118 PPA 120
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 34.3 bits (77), Expect = 0.26
Identities = 30/95 (31%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 352 PEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELG 411
P R + P+P R S PT L R P P RA RA+ G A G
Sbjct: 695 PRRPETEGVPVPERA--SPGPPTQLVLKLKERPSPGPAAGRAARAAAGGTASPGGGARRA 752
Query: 412 RPAPPCPEASAPRPV----------GSRDVAAAAA 436
+ P P S P P G+RD A A A
Sbjct: 753 SASGPVPGRSPPAPARQSVIHVQASGARDEACAPA 787
>gi|239756693 PREDICTED: similar to coiled-coil domain containing 92
[Homo sapiens]
Length = 272
Score = 33.5 bits (75), Expect = 0.44
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 392 RAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGP 451
R+ +A PG R S + G AP P++ +P DV+ A++ + A + L G
Sbjct: 195 RSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPDVSKASSPLL----AREFLRGA 250
Query: 452 ERRHRLTR---PPRAYPAKT 468
ER H L R P R++P T
Sbjct: 251 ERGHLLYREDSPSRSWPGPT 270
>gi|169171485 PREDICTED: hypothetical protein [Homo sapiens]
Length = 349
Score = 33.5 bits (75), Expect = 0.44
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 391 RRAGRASPGLWAKRAGSWE-LGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLW 449
+R+ A L A R G+W L RP PP R G+ A AEV G L L
Sbjct: 73 QRSAPAVAKLGAAREGAWAALTRPKPPARRRLPGRGAGAEMPATLRAEVSGQQGLLGALR 132
Query: 450 GPE 452
GP+
Sbjct: 133 GPQ 135
>gi|239754361 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.44
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 402 AKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPP 461
A + W L RP P P A AP P +R AAA R + R RPP
Sbjct: 57 AADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPA-------RPLRPP 109
Query: 462 RAYPAKTFT 470
++PA + T
Sbjct: 110 SSHPAPSRT 118
>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 33.5 bits (75), Expect = 0.44
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 392 RAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGP 451
R+ +A PG R S + G AP P++ +P DV+ A++ + A + L G
Sbjct: 301 RSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPDVSKASSPLL----AREFLRGA 356
Query: 452 ERRHRLTR---PPRAYPAKT 468
ER H L R P R++P T
Sbjct: 357 ERGHLLYREDSPSRSWPGPT 376
>gi|239748908 PREDICTED: hypothetical protein XP_002346853 [Homo
sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.44
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 402 AKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPP 461
A + W L RP P P A AP P +R AAA R + R RPP
Sbjct: 57 AADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPA-------RPLRPP 109
Query: 462 RAYPAKTFT 470
++PA + T
Sbjct: 110 SSHPAPSRT 118
>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
sapiens]
Length = 378
Score = 33.5 bits (75), Expect = 0.44
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 392 RAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGP 451
R+ +A PG R S + G AP P++ +P DV+ A++ + A + L G
Sbjct: 301 RSPQAGPGSEGSRPSSRKRGEAAPAPPKSPNRQPFVLPDVSKASSPLL----AREFLRGA 356
Query: 452 ERRHRLTR---PPRAYPAKT 468
ER H L R P R++P T
Sbjct: 357 ERGHLLYREDSPSRSWPGPT 376
>gi|239743797 PREDICTED: similar to cell recognition molecule CASPR3
[Homo sapiens]
Length = 944
Score = 33.5 bits (75), Expect = 0.44
Identities = 38/140 (27%), Positives = 52/140 (37%), Gaps = 21/140 (15%)
Query: 339 WLQAGNLSGSTLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASP 398
W+ +G + LH + E V G+S T A P W R A+
Sbjct: 55 WVNSGVIKPGVLHLQAEADG------AVFGASPCTTAA---------PPRWERGTEEAAG 99
Query: 399 GLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLT 458
+R ELGRP+ ++ RP + V A PGA R GPER +L
Sbjct: 100 ITGGERQA--ELGRPSRSLLDSRCCRPPPAPSVRDAPEPAASVPGAAPR--GPERSRKLR 155
Query: 459 RPPRAYPAKTFTEPFFGALW 478
++T P GA W
Sbjct: 156 CESAGPTSETQLGP--GAAW 173
>gi|239742932 PREDICTED: hypothetical protein XP_002342691 [Homo
sapiens]
Length = 165
Score = 33.5 bits (75), Expect = 0.44
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 402 AKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPP 461
A + W L RP P P A AP P +R AAA R + R RPP
Sbjct: 57 AADSSRWPLPRPVPGSPAAVAPAPGAARPGAAAPRRSRLRRNSTSPA-------RPLRPP 109
Query: 462 RAYPAKTFT 470
++PA + T
Sbjct: 110 SSHPAPSRT 118
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 33.1 bits (74), Expect = 0.57
Identities = 32/104 (30%), Positives = 38/104 (36%), Gaps = 30/104 (28%)
Query: 363 PHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPE--- 419
PHR S P AA P R RA AG W+L PAP
Sbjct: 1233 PHRPRASHRTPAAAA----------PHHHRHRRA--------AGGWDLPPPAPTSRSLED 1274
Query: 420 -ASAPRPVGSRDVAAAAAEVRKTPGALDRLWGP------ERRHR 456
+S PR +R + + R+ P A WGP RRHR
Sbjct: 1275 LSSCPRAAPARRLTGPSRHARRCPHAAH--WGPPLPTASHRRHR 1316
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 33.1 bits (74), Expect = 0.57
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 375 GAALVRVLRLL-----PWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSR 429
GAA +R +L P R R P +R GS E RP PP P + PRP +
Sbjct: 53 GAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRPPPAA 112
Query: 430 DVAAAAAEVR---KTPGA 444
AA R +PGA
Sbjct: 113 PSPPAAPGPRGGGASPGA 130
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 33.1 bits (74), Expect = 0.57
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 375 GAALVRVLRLL-----PWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSR 429
GAA +R +L P R R P +R GS E RP PP P + PRP +
Sbjct: 53 GAAQIRAAEVLVYGAPPGRVSRLLERFDPPAAPRRRGSPERARPPPPPPPPAPPRPPPAA 112
Query: 430 DVAAAAAEVR---KTPGA 444
AA R +PGA
Sbjct: 113 PSPPAAPGPRGGGASPGA 130
>gi|239756691 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 32.7 bits (73), Expect = 0.75
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 352 PEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
P + H PLPH+ + G+ +++ L L+P PW R + A PG
Sbjct: 31 PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90
Query: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
W KR+ + +P P P + A GS
Sbjct: 91 KTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGS 126
>gi|239754993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 32.7 bits (73), Expect = 0.75
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 361 PLPHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRASPG--LWAKRAGSWELGRPAPP 416
P PH SHP L + WP + + R SPG LW +R W L RP P
Sbjct: 137 PAPH------SHPPPIGLALACKSRRWPRAQPS-RMSPGPPLWERRQSYWPLTRPLGP 187
>gi|239751188 PREDICTED: hypothetical protein XP_002347742 [Homo
sapiens]
Length = 319
Score = 32.7 bits (73), Expect = 0.75
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 352 PEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
P + H PLPH+ + G+ +++ L L+P PW R + A PG
Sbjct: 31 PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90
Query: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
W KR+ + +P P P + A GS
Sbjct: 91 KTNAAWGWRGKRSDGGQTHQPQGPRPPSEALALEGS 126
>gi|239745676 PREDICTED: hypothetical protein XP_002343540 [Homo
sapiens]
Length = 319
Score = 32.7 bits (73), Expect = 0.75
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 352 PEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLP----------WPWGRRAGRASPG-- 399
P + H PLPH+ + G+ +++ L L+P PW R + A PG
Sbjct: 31 PHKPHPAPQPLPHQARDLAGEQEGSRVLQQLLLVPNFILAGLRETNPWRRESREAEPGSG 90
Query: 400 ----LW---AKRAGSWELGRPAPPCPEASAPRPVGS 428
W KR+ + +P P P + A GS
Sbjct: 91 KTNAAWRWRGKRSDGGQTHQPQGPRPPSEALALEGS 126
>gi|82830424 gon-4-like isoform a [Homo sapiens]
Length = 2240
Score = 32.7 bits (73), Expect = 0.75
Identities = 44/147 (29%), Positives = 51/147 (34%), Gaps = 24/147 (16%)
Query: 342 AGNLSGSTLHPEREHQD------DHPLPHRVLGSSSHPT-GAALVRVLRLLPWPWGRRAG 394
+G GSTL RE D P PH PT GA L V R P R
Sbjct: 1947 SGLAVGSTLPSPREVTVTERLLLDGPPPHSPETPQFPPTTGAVLYTVKRNQVGPEVRSCP 2006
Query: 395 RASPGLWAKRAGS------------WELGR----PAPPCPEASAPRPVGSRDVAAAAAEV 438
+ASP L +R G W+ P P AS PV S+ A V
Sbjct: 2007 KASPRLQKEREGQKAVSESEALMLVWDASETEKLPGTVEPPASFLSPVSSKTRDAGRRHV 2066
Query: 439 RKTPGALDRLWGPERRHRLTRPPRAYP 465
P +R W P R R+ R P
Sbjct: 2067 SGKPDTQER-WLPSSRARVKTRDRTCP 2092
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 32.7 bits (73), Expect = 0.75
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
Query: 368 GSSSHPTGAALVRVLRLLPWPWGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVG 427
GS S+ A + R P RA R +P A A P PP P A+A P
Sbjct: 89 GSISYRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAA-PAR 147
Query: 428 SRDVAAAAAEVRKTPGALDRLWGPERRHRLTRPPRAYPAKTFTEP 472
+ AAAAA +PG +R L PP A A P
Sbjct: 148 APRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAP 192
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 32.3 bits (72), Expect = 0.98
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 394 GRASPGLWAK-RAGSWELGRPAPPCPEASAPRPVGSRDVAAAAAEVRKTPGALDRLWGPE 452
G PG W + G G+ PCPE PV S A + TP L + G E
Sbjct: 208 GLQMPGQWGPVQGGPQPSGQHRSPCPEG----PVPSGVPCATSVPHFPTPSILHQGPGHE 263
Query: 453 RRHRLTRPPRAYPA 466
+ L PP A P+
Sbjct: 264 QHSPLVAPPAALPS 277
>gi|169213725 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 32.3 bits (72), Expect = 0.98
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 363 PHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRA-SPGLWAKRAGSWELGRPAPPCPEAS 421
P+ V S P+G R+L L W WGR AG + S G W G W L R A
Sbjct: 41 PYPVPPSEGCPSG----RLLLSLHWDWGRGAGGSWSGGAWPGSPG-WRLARGPAHGASAE 95
Query: 422 APRPVG 427
+ P+G
Sbjct: 96 SLGPLG 101
>gi|169214202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 32.3 bits (72), Expect = 0.98
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 363 PHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRA-SPGLWAKRAGSWELGRPAPPCPEAS 421
P+ V S P+G R+L L W WGR AG + S G W G W L R A
Sbjct: 41 PYPVPPSEGCPSG----RLLLSLHWDWGRGAGGSWSGGAWPGSPG-WRLARGPAHGASAE 95
Query: 422 APRPVG 427
+ P+G
Sbjct: 96 SLGPLG 101
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 32.3 bits (72), Expect = 0.98
Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 32/113 (28%)
Query: 336 LPSWLQAGNLSGSTLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWP------- 388
LP + +L S LHP R LG G A +LR+ P P
Sbjct: 143 LPPSRKRNSLGSSPLHPVR------------LGRVRAHAGPAGTSILRVAPHPALPGAQV 190
Query: 389 -------WGRRAGRASPGLW---AKRAGSWELGR---PAPPCPEASAPRPVGS 428
W R G++ W R S GR PAPP EA++ +GS
Sbjct: 191 HWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASREDLGS 243
>gi|169213543 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 32.3 bits (72), Expect = 0.98
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 363 PHRVLGSSSHPTGAALVRVLRLLPWPWGRRAGRA-SPGLWAKRAGSWELGRPAPPCPEAS 421
P+ V S P+G R+L L W WGR AG + S G W G W L R A
Sbjct: 41 PYPVPPSEGCPSG----RLLLSLHWDWGRGAGGSWSGGAWPGSPG-WRLARGPAHGASAE 95
Query: 422 APRPVG 427
+ P+G
Sbjct: 96 SLGPLG 101
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 32.3 bits (72), Expect = 0.98
Identities = 32/113 (28%), Positives = 41/113 (36%), Gaps = 32/113 (28%)
Query: 336 LPSWLQAGNLSGSTLHPEREHQDDHPLPHRVLGSSSHPTGAALVRVLRLLPWP------- 388
LP + +L S LHP R LG G A +LR+ P P
Sbjct: 143 LPPSRKRNSLGSSPLHPVR------------LGRVRAHAGPAGTSILRVAPHPALPGAQV 190
Query: 389 -------WGRRAGRASPGLW---AKRAGSWELGR---PAPPCPEASAPRPVGS 428
W R G++ W R S GR PAPP EA++ +GS
Sbjct: 191 HWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAPPTQEAASREDLGS 243
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 32.0 bits (71), Expect = 1.3
Identities = 35/138 (25%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 171 SNTYSTLRLGENAREAGLWNVMLTDARSSFTAPSHRQAKLSKHHMPLAHSGSQ---VKRL 227
SNT +R G A ++ + SSF A Q ++ +P A G Q +R
Sbjct: 776 SNTGKLIRTGARGPPAPSSSLPIRQEPSSFRAVPPPQPQMFGEELPDAQDGEQPGPSRRK 835
Query: 228 QAPGQGSPPRLYSVSPSHCREGDREASWWLCECGALGMSDRVGDYNHQHREPEETKEGGL 287
+ P LY++ D+E L E D + + R PEE +E
Sbjct: 836 RQPSMSETMPLYTLCKEDLESMDKEVDDILGEGS--------DDSDSEKRRPEEQEE--- 884
Query: 288 GVGEPPKDKLGDRSVREI 305
EP K G R R +
Sbjct: 885 ---EPQPRKPGTRRERTL 899
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,472,507
Number of Sequences: 37866
Number of extensions: 1288178
Number of successful extensions: 5041
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 4988
Number of HSP's gapped (non-prelim): 111
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.