Guide to the Human Genome
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Name: LOC100288204 Sequence: fasta or formatted (212aa) NCBI GI: 239741483
Description:

PREDICTED: hypothetical protein XP_002342212

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         18           4
 C cysteine            0.5          1           1
 D aspartate           4.2          9           2
 E glutamate           2.4          5           1
 F phenylalanine       0.9          2           1
 G glycine            10.8         23           1
 H histidine           7.5         16           1
 I isoleucine          1.4          3           1
 K lysine              2.8          6           1
 L leucine            15.6         33           2
 M methionine          0.9          2           1
 N asparagine          0.9          2           1
 P proline             9.9         21           2
 Q glutamine           7.1         15           1
 R arginine            8.5         18           2
 S serine              4.2          9           2
 T threonine           3.8          8           1
 V valine              7.5         16           3
 W tryptophan          1.9          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342212 
LOC100291804          1.000   PREDICTED: hypothetical protein XP_002345334 
LOC100287022          1.000   PREDICTED: hypothetical protein 
LOC100292799          0.024   PREDICTED: hypothetical protein 
LOC100289819          0.024   PREDICTED: hypothetical protein XP_002347589 
LOC100287646          0.024   PREDICTED: hypothetical protein XP_002343394 
RBMXL2                0.019   testes-specific heterogenous nuclear ribonucleoprot...
SKIV2L                0.014   superkiller viralicidic activity 2-like homolog [Hom...
LOC440829             0.014   PREDICTED: transmembrane protein 46-like 
LOC440829             0.014   PREDICTED: transmembrane protein 46-like 
LOC645249             0.012   PREDICTED: hypothetical protein 
LOC100289886          0.012   PREDICTED: hypothetical protein XP_002348008 
LOC100287120          0.012   PREDICTED: hypothetical protein XP_002343728 
PRR18                 0.012   proline rich region 18 
CERKL                 0.010   ceramide kinase-like isoform b 
MTA1                  0.010   metastasis associated protein 
PTPN6                 0.007   protein tyrosine phosphatase, non-receptor type 6 is...
ACD                   0.007   adrenocortical dysplasia homolog isoform 3 
ACD                   0.007   adrenocortical dysplasia homolog isoform 1 
ACD                   0.007   adrenocortical dysplasia homolog isoform 2 
MEIS3                 0.007   Meis1, myeloid ecotropic viral integration site 1 ho...
MED25                 0.007   mediator complex subunit 25 
EEF1D                 0.007   eukaryotic translation elongation factor 1 delta is...
EEF1D                 0.007   eukaryotic translation elongation factor 1 delta is...
EEF1D                 0.007   eukaryotic translation elongation factor 1 delta iso...
FOXO4                 0.007   forkhead box O4 
PIGQ                  0.007   phosphatidylinositol glycan anchor biosynthesis, cla...
PTPN7                 0.005   protein tyrosine phosphatase, non-receptor type 7 is...
MLL2                  0.005   myeloid/lymphoid or mixed-lineage leukemia 2 
DOT1L                 0.005   DOT1-like, histone H3 methyltransferase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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