Guide to the Human Genome
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Name: LOC100132733 Sequence: fasta or formatted (561aa) NCBI GI: 239741279
Description:

PREDICTED: similar to FLJ00310 protein

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [254aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         25           3
 C cysteine            1.8         10           1
 D aspartate           4.6         26           2
 E glutamate          13.9         78           3
 F phenylalanine       1.8         10           1
 G glycine             2.9         16           1
 H histidine           2.7         15           1
 I isoleucine          3.6         20           2
 K lysine             11.2         63           3
 L leucine             9.6         54           2
 M methionine          2.7         15           1
 N asparagine          4.3         24           2
 P proline             3.6         20           2
 Q glutamine           8.4         47           3
 R arginine            3.7         21           1
 S serine              7.8         44           2
 T threonine           3.9         22           2
 V valine              7.5         42           4
 W tryptophan          0.2          1           1
 Y tyrosine            1.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to FLJ00310 protein 
ANKRD20A2             0.328   ankyrin repeat domain 20 family, member A2 
ANKRD20A3             0.326   ankyrin repeat domain 20 family, member A3 
ANKRD20A1             0.325   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.325   ankyrin repeat domain 20 family, member A4 
ANKRD20A5             0.321   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.321   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD18B              0.231   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.231   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.231   PREDICTED: ankyrin repeat domain 18B 
ANKRD18A              0.212   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.212   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.212   PREDICTED: ankyrin repeat domain 18A 
LOC728897             0.135   PREDICTED: similar to coiled-coil domain containing...
LOC728897             0.134   PREDICTED: similar to coiled-coil domain containing...
LOC643166             0.133   PREDICTED: similar to hCG1744891 
LOC100287836          0.133   PREDICTED: hypothetical protein XP_002344496 
LOC100289454          0.130   PREDICTED: hypothetical protein XP_002342954 
CCDC29                0.129   coiled-coil domain containing 29 
LOC728384             0.126   PREDICTED: similar to coiled-coil domain containing...
CCDC144A              0.117   coiled-coil domain containing 144A 
ANKRD26               0.109   ankyrin repeat domain 26 
LOC400986             0.097   PREDICTED: protein immuno-reactive with anti-PTH po...
LOC400986             0.093   PREDICTED: protein immuno-reactive with anti-PTH po...
ANKRD36               0.089   PREDICTED: ankyrin repeat domain 36 
ANKRD36B              0.089   ankyrin repeat domain 36B 
ANKRD62               0.085   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.085   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.085   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
LOC100131673          0.070   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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