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Search of human proteins with 239741059
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741059 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2 isoform 3
[Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752710 PREDICTED: similar to coiled-coil-helix-coiled-coil... 375 e-104
gi|239747238 PREDICTED: similar to coiled-coil-helix-coiled-coil... 375 e-104
gi|239741059 PREDICTED: similar to coiled-coil-helix-coiled-coil... 375 e-104
gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing... 288 1e-78
gi|47497976 coiled-coil-helix-coiled-coil-helix domain containin... 145 2e-35
gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo ... 43 2e-04
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 43 2e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 42 3e-04
gi|50428940 mediator complex subunit 25 [Homo sapiens] 42 4e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 41 7e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 9e-04
gi|31377750 YTH domain family, member 1 [Homo sapiens] 40 9e-04
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 40 0.001
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 40 0.001
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ... 40 0.001
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ... 40 0.001
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 40 0.001
gi|4758392 forkhead box D1 [Homo sapiens] 40 0.001
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 39 0.002
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 39 0.003
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 39 0.003
gi|22748651 ORAI calcium release-activated calcium modulator 3 [... 39 0.003
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 38 0.004
gi|4505101 microtubule-associated protein 7 [Homo sapiens] 38 0.004
gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens] 38 0.006
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 37 0.007
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.007
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.007
>gi|239752710 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
[Homo sapiens]
Length = 184
Score = 375 bits (963), Expect = e-104
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR 60
MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR
Sbjct: 1 MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR 60
Query: 61 PAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGG 120
PAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGG
Sbjct: 61 PAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGG 120
Query: 121 SNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIKLCEGFNEVLKQCRLA 180
SNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIKLCEGFNEVLKQCRLA
Sbjct: 121 SNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIKLCEGFNEVLKQCRLA 180
Query: 181 NGLA 184
NGLA
Sbjct: 181 NGLA 184
>gi|239747238 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 375 bits (963), Expect = e-104
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR 60
MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR
Sbjct: 1 MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR 60
Query: 61 PAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGG 120
PAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGG
Sbjct: 61 PAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGG 120
Query: 121 SNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIKLCEGFNEVLKQCRLA 180
SNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIKLCEGFNEVLKQCRLA
Sbjct: 121 SNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIKLCEGFNEVLKQCRLA 180
Query: 181 NGLA 184
NGLA
Sbjct: 181 NGLA 184
>gi|239741059 PREDICTED: similar to
coiled-coil-helix-coiled-coil-helix domain containing 2
isoform 3 [Homo sapiens]
Length = 184
Score = 375 bits (963), Expect = e-104
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR 60
MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR
Sbjct: 1 MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR 60
Query: 61 PAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGG 120
PAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGG
Sbjct: 61 PAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGG 120
Query: 121 SNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIKLCEGFNEVLKQCRLA 180
SNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIKLCEGFNEVLKQCRLA
Sbjct: 121 SNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIKLCEGFNEVLKQCRLA 180
Query: 181 NGLA 184
NGLA
Sbjct: 181 NGLA 184
>gi|7705851 coiled-coil-helix-coiled-coil-helix domain containing 2
[Homo sapiens]
Length = 151
Score = 288 bits (738), Expect = 1e-78
Identities = 142/148 (95%), Positives = 143/148 (96%)
Query: 37 GSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTA 96
GSRS TSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPS VGSSAAAPRQPGLMAQMATTA
Sbjct: 4 GSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTA 63
Query: 97 AGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLE 156
AGVAVGSAVGH LGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPC EIKQFLE
Sbjct: 64 AGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQFLE 123
Query: 157 CAENQGDIKLCEGFNEVLKQCRLANGLA 184
CA+NQGDIKLCEGFNEVLKQCRLANGLA
Sbjct: 124 CAQNQGDIKLCEGFNEVLKQCRLANGLA 151
>gi|47497976 coiled-coil-helix-coiled-coil-helix domain containing
10 [Homo sapiens]
Length = 142
Score = 145 bits (365), Expect = 2e-35
Identities = 75/139 (53%), Positives = 92/139 (66%), Gaps = 2/139 (1%)
Query: 47 PPASRAPQMRAAPRPA-PVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAV 105
P SR+ R A RPA P A PPA PPS + A QPGLMAQMATTAAGVAVGSAV
Sbjct: 2 PRGSRSAASRPASRPAAPSAHPPAHPPPSAAAPAPAPSGQPGLMAQMATTAAGVAVGSAV 61
Query: 106 GHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCFCEIKQFLECAENQGDIK 165
GH++G A+TG FSGGS +EP++P + Q PC EI+QFL+C+ Q D+
Sbjct: 62 GHVMGSALTGAFSGGS-SEPSQPAVQQAPTPAAPQPLQMGPCAYEIRQFLDCSTTQSDLS 120
Query: 166 LCEGFNEVLKQCRLANGLA 184
LCEGF+E LKQC+ +GL+
Sbjct: 121 LCEGFSEALKQCKYYHGLS 139
>gi|15451844 ADAM metallopeptidase domain 19 preproprotein [Homo
sapiens]
Length = 918
Score = 42.7 bits (99), Expect = 2e-04
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 3 LSVLERSKPGGRSHLALRWLSHVRRPSRRVPRIPG-------SRSHTSRMAPPASRAPQM 55
LS R+ PG S + S PSR +P P SR + A PA+ P
Sbjct: 811 LSRAARNSPGPGSQIERTESSRRPPPSRPIPPAPNCIVSQDFSRPRPPQKALPANPVPGR 870
Query: 56 RAAPRP--APVAQPPAAAPPSTVGSSAAAPRQPGLMAQMA 93
R+ PRP A +PP A P + +A AP+ P +Q A
Sbjct: 871 RSLPRPGGASPLRPPGAGPQQSRPLAALAPKFPEYRSQRA 910
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 42.7 bits (99), Expect = 2e-04
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 45 MAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSA 104
MA P S+AP A +P P+ P A P+ S A+AP A AA A +
Sbjct: 1 MAEP-SQAPTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTG 59
Query: 105 VGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQ 142
G G + G GS +PARP ++ Q+ + AQ
Sbjct: 60 TG---GPGVGSG-GAGSGGDPARPGLSQQQRASQRKAQ 93
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 42.0 bits (97), Expect = 3e-04
Identities = 40/120 (33%), Positives = 47/120 (39%), Gaps = 11/120 (9%)
Query: 33 PRIP-GSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAA-----PRQP 86
PR P G+ + + APP + AP P PAPVA A P ++A A P QP
Sbjct: 112 PRAPRGAPAAAAAAAPPPTPAPP----PPPAPVAAAAPARAPRAAAAAATAPPSPGPAQP 167
Query: 87 GLMAQMATTAAGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQP 146
G AQ A A A + G A AR PQ P QQQQP
Sbjct: 168 GPRAQRAAPLAAPPPAPAAPPAVAPP-AGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQP 226
Score = 28.1 bits (61), Expect = 4.5
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 33 PRIPGSRSHTSR---MAPPASRAPQM-------RAAPRPAPVAQ----PPAAAPPSTVGS 78
P PG R+ + PPA AP R AP PA A+ PP PP+
Sbjct: 164 PAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQ 223
Query: 79 SAAAPRQP-----GLMAQMATTAAGVAVGSAVGHILGHAITGG 116
P QP G + A V++ V ++ G GG
Sbjct: 224 QQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGG 266
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 41.6 bits (96), Expect = 4e-04
Identities = 29/83 (34%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 45 MAPPASRAPQMRAAPRPAPVAQPPAAAPPSTV-----GSSAAAPRQPGLMAQMATTAAGV 99
+ PP S+AP + P P +PP A+ PS V GS A QPG + T A G
Sbjct: 316 VGPPFSQAPAPQLPPGPPGAPKPPPASQPSLVSTVAPGSGLAPTAQPGAPSMAGTVAPGG 375
Query: 100 AVGSAVGHILGHAITGGFSGGSN 122
G + LG GG SN
Sbjct: 376 VSGPSPAQ-LGAPALGGQQSVSN 397
Score = 26.9 bits (58), Expect = 9.9
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 59 PRPAPVAQPPAAAPPSTVGSSAAAPRQPG 87
P+P AQPP AP G +A+ P PG
Sbjct: 605 PQPQGTAQPPPGAPQGPPG-AASGPPPPG 632
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 40.8 bits (94), Expect = 7e-04
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 36 PGSRSHTSRMAPPASRAPQMRAAPRPAP----VAQPPAAAPPSTVGSSAAAPRQPGLMAQ 91
P + S PPA P + +P P + PPAA PPS GS AA P G
Sbjct: 1000 PATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTT 1059
Query: 92 MATT----AAGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPA 141
A T G A S G A T G A P+ P P T P+
Sbjct: 1060 PAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPS-PKGAPMPPAATPPS 1112
Score = 35.0 bits (79), Expect = 0.036
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 36 PGSRSHTSRMAPPASRAPQMR---AAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQM 92
P + S PPA+ P + A P P PPAA PPS G A P +
Sbjct: 1071 PATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPA 1130
Query: 93 AT 94
AT
Sbjct: 1131 AT 1132
Score = 33.9 bits (76), Expect = 0.081
Identities = 36/128 (28%), Positives = 46/128 (35%), Gaps = 16/128 (12%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMR---AAPRPAPVAQPPAAAPPSTVGSSAA--- 81
P+ P+ + S TS A P + A+P P PPAA PPS G A
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSP 959
Query: 82 --APRQPGLMAQMATTAAGVAVGSAVGHILGHAIT------GGFSGGSNAEPARPDITYQ 133
AP P A + G A S G A T G + P P +T
Sbjct: 960 KWAPTPPA--ATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPP 1017
Query: 134 EPQGTQPA 141
P+G+ A
Sbjct: 1018 SPKGSPAA 1025
Score = 33.5 bits (75), Expect = 0.11
Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 36 PGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATT 95
P T PP+ + P+ AP PPAA PPS G A P + + T
Sbjct: 1237 PKGAPTTPAATPPSPKGGPATPPPKGAPT--PPAATPPSLKGGLATPPHKGAPNPAVVTP 1294
Query: 96 AA---GVAVGSAVGHILGHAITGGFSGGS------NAEPARPDITYQEPQGT 138
+ G A G A T GS P P +T P+GT
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGT 1346
Score = 31.6 bits (70), Expect = 0.40
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 37 GSRSHTSRMAPPASRAPQMRAAPRPAPVAQP---PAAAPPSTVGSSAAAPRQPGLMAQMA 93
G+ S + PPA +P + AP P V P A P+ G+ + P P +
Sbjct: 1592 GAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSP 1651
Query: 94 TTAAGV 99
T+ A V
Sbjct: 1652 TSPASV 1657
Score = 30.8 bits (68), Expect = 0.69
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 41 HTSRMAPPASRAPQMR---AAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAA 97
H PA+ P + A P P PAA PPS G A P + AT +
Sbjct: 1122 HKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPS 1181
Query: 98 ---GVAVGSAVGHILGHAIT-----GGFSGGS-NAEPARPDITYQEPQG 137
G+A S G A T GG + S P P T P+G
Sbjct: 1182 PKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1230
Score = 28.9 bits (63), Expect = 2.6
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 36 PGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAP 83
P T PP+ + +P+ AP PAA PPS G A P
Sbjct: 1214 PKGAPTTPAATPPSPKGGLATPSPKGAPTT--PAATPPSPKGGPATPP 1259
Score = 28.5 bits (62), Expect = 3.4
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 30 RRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPS 74
+ P P S+ +S PPA + AP P + PPA PS
Sbjct: 1568 KEAPATPSSKEASS---PPAVTPSTYKGAPSPKELLIPPAVTSPS 1609
Score = 28.1 bits (61), Expect = 4.5
Identities = 32/114 (28%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 36 PGSRSHTSRMAPPASRAPQMR---AAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQM 92
P + S PPA+ P + A P PAA PPS G A P +
Sbjct: 1094 PATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPA 1153
Query: 93 ATTAA---GVAVGSAVGHILGHAIT-----GGFSGGS-NAEPARPDITYQEPQG 137
AT + G+A G A T GG + S P P T P+G
Sbjct: 1154 ATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1207
Score = 27.7 bits (60), Expect = 5.8
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 47 PPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVG 106
PPA+ P +P+ +P PP AP + + P L A ++ G S+
Sbjct: 1312 PPAATPP----SPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKE 1367
Query: 107 HILGHAITGGFSGGSNAEPARP 128
A T GG P P
Sbjct: 1368 GPTPPAATPSHKGGPAMTPPSP 1389
Score = 27.3 bits (59), Expect = 7.6
Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
Query: 36 PGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATT 95
P T PP+ + +P+ AP PAA PPS G A P G A T
Sbjct: 1191 PKGAPTTPAATPPSPKGGLATPSPKGAPTT--PAATPPSPKG-GLATPSPKGAPTTPAAT 1247
Query: 96 AAGVAVGSA 104
G A
Sbjct: 1248 PPSPKGGPA 1256
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.4 bits (93), Expect = 9e-04
Identities = 35/95 (36%), Positives = 40/95 (42%), Gaps = 15/95 (15%)
Query: 33 PRIPGSRSHT----SRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGL 88
P PG+ T APPA AP AAP PA PAAAPP + A R PG
Sbjct: 231 PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAA----PAAAPPPPPPAPATLARPPGH 286
Query: 89 MAQMATTAAGVAVGSAVGHILGHAITGGFSGGSNA 123
A T A V +A A GG +G + A
Sbjct: 287 PAGPPTAAPAVPPPAA-------AQNGGSAGAAPA 314
Score = 35.8 bits (81), Expect = 0.021
Identities = 33/129 (25%), Positives = 44/129 (34%), Gaps = 15/129 (11%)
Query: 31 RVPRIPGSRSHTSRMAPPASRAPQ---MRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPG 87
R P P + PP + A AAP PAP A PA +AAA PG
Sbjct: 282 RPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPG 341
Query: 88 LMAQ------------MATTAAGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEP 135
+ A+ T AA +A ++G + G + P P P
Sbjct: 342 VKAESPKRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLP 401
Query: 136 QGTQPAQQQ 144
+G A Q
Sbjct: 402 KGAAGAVTQ 410
Score = 32.3 bits (72), Expect = 0.24
Identities = 36/125 (28%), Positives = 45/125 (36%), Gaps = 24/125 (19%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAA-----PPSTVGSSAAA 82
P+ P +PPA+ AP AAP AP PPA A P G AA
Sbjct: 250 PAPAAP------------SPPAAPAP---AAPAAAPPPPPPAPATLARPPGHPAGPPTAA 294
Query: 83 PRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEP----QGT 138
P P A +AG A A ++G G+ A P + + P Q
Sbjct: 295 PAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAA 354
Query: 139 QPAQQ 143
PA Q
Sbjct: 355 PPAAQ 359
Score = 30.8 bits (68), Expect = 0.69
Identities = 30/98 (30%), Positives = 36/98 (36%), Gaps = 27/98 (27%)
Query: 33 PRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPA--AAPPSTV------------GS 78
P P + S + AP A A P PA +A+PP A PP+ GS
Sbjct: 249 PPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGS 308
Query: 79 SAAAPR-------------QPGLMAQMATTAAGVAVGS 103
+ AAP QPG A A A GV S
Sbjct: 309 AGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAES 346
Score = 30.0 bits (66), Expect = 1.2
Identities = 30/106 (28%), Positives = 39/106 (36%), Gaps = 16/106 (15%)
Query: 27 RPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR-PAPVAQPPAAAPPSTVGSSAAAPRQ 85
RP P+ PG PP+ R P + A P PA +PP P + GS A P
Sbjct: 96 RPGGGGPQRPG---------PPSPRRPLVPAGPAPPAAKLRPP---PEGSAGSCAPVPAA 143
Query: 86 PGLMAQMATTAAGVAVGSAVGHILGHAITG---GFSGGSNAEPARP 128
+ A AG A + + A G G G P +P
Sbjct: 144 AAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKP 189
Score = 29.3 bits (64), Expect = 2.0
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 43 SRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATT 95
++M A PQ APRPA P +APP + S+ AP P + Q+ T
Sbjct: 474 AQMQAQAHAQPQTTMAPRPA----TPTSAPPVQI-STVQAPGTPIIARQVTPT 521
Score = 28.1 bits (61), Expect = 4.5
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 30 RRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPR 84
+RV + + T + PAS A M P PAA PP G+ P+
Sbjct: 348 KRVVQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPK 402
>gi|31377750 YTH domain family, member 1 [Homo sapiens]
Length = 559
Score = 40.4 bits (93), Expect = 9e-04
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 46 APPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAV 105
AP +AP +AAP+P VAQP A PP+ +P+QP +A A G +
Sbjct: 283 APVPQQAPSPQAAPQPQQVAQPLPAQPPALAQPQYQSPQQPPQTRWVAPRNRNAAFGQSG 342
Query: 106 G 106
G
Sbjct: 343 G 343
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/114 (34%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 6 LERSKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHT-SRMAPPASRAPQMRAAPRPA-- 62
L +P GR R + R P+ R PR+P S S + A P S++ R +P P+
Sbjct: 1206 LRPKQPPGRGLGPGRAQAGARPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQ 1265
Query: 63 --PVAQPPAAAPPS--------TVGSSAAAPRQPGLMAQMATT--AAGVAVGSA 104
P PP PP+ + G S PR L AQ ATT AG A G A
Sbjct: 1266 ARPGVPPPRGVPPARAQPDGTPSPGGSKKGPRGK-LQAQRATTKGRAGGAEGRA 1318
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 40.0 bits (92), Expect = 0.001
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 10/105 (9%)
Query: 36 PGSRSHTSRMAPPASRAPQMRAAP-----RPAPVAQPPAAAPPSTVGSSAAAPRQPGLMA 90
PG+ + APP++ P+ AP PAP AQ A APP+ G S PR P +
Sbjct: 338 PGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQ--AVAPPAPSGPSTTQPRPPSV-- 393
Query: 91 QMATTAAGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEP 135
+ G G ++ GG +G N + + P
Sbjct: 394 -QPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSP 437
Score = 27.3 bits (59), Expect = 7.6
Identities = 26/95 (27%), Positives = 35/95 (36%), Gaps = 10/95 (10%)
Query: 49 ASRAPQMRAAPRPAPVAQPPAAAPPSTV--GSSAAAPRQPGLMAQMATTAAGVAVGSAVG 106
+++ PQ A P P PPAA+ ST + AP P +A G A
Sbjct: 310 SNQHPQSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAP-------PSALGPKASPAPS 362
Query: 107 HILGHAITGGFSGGSNAEPARPDITYQEPQGTQPA 141
H G + A P+ P T P QP+
Sbjct: 363 HNSGTPAPYAQAVAPPA-PSGPSTTQPRPPSVQPS 396
>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/78 (41%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 33 PRIPGSRSHTSRMAPPASRAPQMRAAP-----RPAPVAQPPA--------AAPPSTVGSS 79
PR P S+ S P RAP AAP P P Q A A PPS+ S
Sbjct: 168 PRAPRSQELRSWAQPAGGRAPGC-AAPWVPQCHPLPPGQSSAERYRALCPALPPSSAPSG 226
Query: 80 AAAPRQPGLMAQMATTAA 97
A APR P L Q TTAA
Sbjct: 227 AEAPRSPPLRLQRYTTAA 244
Score = 28.5 bits (62), Expect = 3.4
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 24 HVRRPSRRVPRIPGSRSHTSRM---APPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSA 80
H R R R P + SH S + AP A+R P P PAP + PP A
Sbjct: 30 HCRGGKERPARPPPASSHESHVLDNAPAAAREP-----PPPAPAPRCLRLRPPFPEEGVA 84
Query: 81 AAP 83
A P
Sbjct: 85 ARP 87
>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
sapiens]
Length = 254
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/78 (41%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 33 PRIPGSRSHTSRMAPPASRAPQMRAAP-----RPAPVAQPPA--------AAPPSTVGSS 79
PR P S+ S P RAP AAP P P Q A A PPS+ S
Sbjct: 168 PRAPRSQELRSWAQPAGGRAPGC-AAPWVPQCHPLPPGQSSAERYRALCPALPPSSAPSG 226
Query: 80 AAAPRQPGLMAQMATTAA 97
A APR P L Q TTAA
Sbjct: 227 AEAPRSPPLRLQRYTTAA 244
Score = 28.5 bits (62), Expect = 3.4
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 24 HVRRPSRRVPRIPGSRSHTSRM---APPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSA 80
H R R R P + SH S + AP A+R P P PAP + PP A
Sbjct: 30 HCRGGKERPARPPPASSHESHVLDNAPAAAREP-----PPPAPAPRCLRLRPPFPEEGVA 84
Query: 81 AAP 83
A P
Sbjct: 85 ARP 87
>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
sapiens]
Length = 254
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/78 (41%), Positives = 34/78 (43%), Gaps = 14/78 (17%)
Query: 33 PRIPGSRSHTSRMAPPASRAPQMRAAP-----RPAPVAQPPA--------AAPPSTVGSS 79
PR P S+ S P RAP AAP P P Q A A PPS+ S
Sbjct: 168 PRAPRSQELRSWAQPAGGRAPGC-AAPWVPQCHPLPPGQSSAERYRALCPALPPSSAPSG 226
Query: 80 AAAPRQPGLMAQMATTAA 97
A APR P L Q TTAA
Sbjct: 227 AEAPRSPPLRLQRYTTAA 244
Score = 28.5 bits (62), Expect = 3.4
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 24 HVRRPSRRVPRIPGSRSHTSRM---APPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSA 80
H R R R P + SH S + AP A+R P P PAP + PP A
Sbjct: 30 HCRGGKERPARPPPASSHESHVLDNAPAAAREP-----PPPAPAPRCLRLRPPFPEEGVA 84
Query: 81 AAP 83
A P
Sbjct: 85 ARP 87
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 39.7 bits (91), Expect = 0.001
Identities = 37/118 (31%), Positives = 46/118 (38%), Gaps = 17/118 (14%)
Query: 36 PGSRSHTSRMAPPASRAPQMRAAPR------PAPVAQPPAAAPPSTVGSSAAAPRQPGLM 89
P R APPA AP A P PAP A PPA+AP A P
Sbjct: 500 PDKRLKAEPAAPPA--APSTPAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPA-- 555
Query: 90 AQMATTAAGVAVGSAVGHILGHAITGGFSGGS-NAEPARPDITYQEPQGTQPAQQQQP 146
+T GVA + + G T S GS A P P + +E G +P ++ P
Sbjct: 556 --QSTPTPGVAAAPTL--VSGGGSTSSTSSGSFEASPVEPQLPSKE--GPEPPEEVPP 607
Score = 32.0 bits (71), Expect = 0.31
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 28 PSRRVPR--IPGSRSHTSRMAPPASRAPQMRAAP-RPAPVAQPPAAAPPS 74
P RR R GS +H S +AP AP + P+A PP APPS
Sbjct: 1098 PKRRRQRGSETGSETHESDLAPSDKEAPTPKEGTLTQVPLAPPPPGAPPS 1147
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 39.7 bits (91), Expect = 0.001
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 9 SKPGGRSHLALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPP 68
+K GG AL R P I GS + A A A +A+P P+PVA PP
Sbjct: 347 AKAGGPGASAL-----ARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPP 401
Query: 69 A-------AAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVG 106
A A + VG +AA R L+A A A+ V+ +A+G
Sbjct: 402 APGSSGGGCAAQAAVGPAAALTR--SLVAAAAAAASSVSSSAALG 444
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 39.3 bits (90), Expect = 0.002
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 36 PGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQM 92
P S + T+ A P A AAP P A P++APP + SS++APR+P + +
Sbjct: 1405 PASATATAAPAAPEDAATSAAAAPGEGPAA--PSSAPPPSNSSSSSAPRRPSSLQSL 1459
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 28 PSRRVPRIPG----SRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAP 83
PSR P +PG SRS +SR+ PA + +P P P PP A P +G+ AA
Sbjct: 34 PSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPP---PPPPAAPHVLGARVAAG 90
Query: 84 RQPGLMAQMATTAAGVAVGS 103
L A + ++ VG+
Sbjct: 91 PTHRLSASHSRVSSRGPVGT 110
Score = 26.9 bits (58), Expect = 9.9
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 26 RRPSRRVPRIPGS-RSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPR 84
R P P+ PG R +RM A +P+ RAA + + PP PPS S +
Sbjct: 105 RGPVGTKPKRPGQGRRAGARMRSAAPASPRARAARAISNQSSPPPP-PPSRARSRSLRLS 163
Query: 85 QPG 87
PG
Sbjct: 164 APG 166
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 38.9 bits (89), Expect = 0.003
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 28 PSRRVPRIPG----SRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAP 83
PSR P +PG SRS +SR+ PA + +P P P PP A P +G+ AA
Sbjct: 34 PSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPP---PPPPAAPHVLGARVAAG 90
Query: 84 RQPGLMAQMATTAAGVAVGS 103
L A + ++ VG+
Sbjct: 91 PTHRLSASHSRVSSRGPVGT 110
Score = 26.9 bits (58), Expect = 9.9
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 26 RRPSRRVPRIPGS-RSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPR 84
R P P+ PG R +RM A +P+ RAA + + PP PPS S +
Sbjct: 105 RGPVGTKPKRPGQGRRAGARMRSAAPASPRARAARAISNQSSPPPP-PPSRARSRSLRLS 163
Query: 85 QPG 87
PG
Sbjct: 164 APG 166
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 38.5 bits (88), Expect = 0.003
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
Query: 33 PRIPGSRSHTSRMAPPASRAPQMRAAPRP--APVAQPPAAAPPSTVGSSAAAPRQPGLMA 90
P P S + APPA +P ++ P P +P+A PP APP AP P
Sbjct: 581 PETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASP 640
Query: 91 QMA--TTAAGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQ 142
++ T + A + H+L + S A + P P T P+Q
Sbjct: 641 PLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQ 694
Score = 36.2 bits (82), Expect = 0.016
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 36 PGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATT 95
P S++ S APP P A+P +P A PP APP P P M+ +
Sbjct: 691 PPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPS 750
Query: 96 A 96
A
Sbjct: 751 A 751
Score = 33.5 bits (75), Expect = 0.11
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 35 IPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQP-GLMAQMA 93
+P + APP+ P M+A P + PP P S S AP P L + A
Sbjct: 357 LPSPPATPPSQAPPSMTTPPMQAPPSLQTI--PPIQVPHSLTSPSLQAPPSPLALSSLQA 414
Query: 94 TTAAGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQ 142
TT+ G A L ++ + S P+RP T P + P Q
Sbjct: 415 TTSLGSPTLQATHSFL--TMSPRQTQASLTSPSRPAST---PPDSPPLQ 458
Score = 33.1 bits (74), Expect = 0.14
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 3 LSVLERSKPGGRSHLALRWL----SHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAA 58
LS L P + LA+ L S P + P P + S A P S+AP AA
Sbjct: 642 LSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAA 701
Query: 59 P----RPAPVAQP---PAAAPPSTVGSSAAAP 83
P P+P A P P+A PP AAP
Sbjct: 702 PPLQVPPSPPASPPMSPSATPPPQAPPPLAAP 733
Score = 33.1 bits (74), Expect = 0.14
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPG 87
P +VP P + S A P +AP AAP PPA+ P S S+ PR P
Sbjct: 702 PPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSP--SATPPPRVPP 759
Query: 88 LMA 90
L+A
Sbjct: 760 LLA 762
Score = 32.7 bits (73), Expect = 0.18
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 22 LSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMR----AAPRPAPVAQPPAAAPPSTVG 77
LS + PS + P + +PP S Q A+P +P A PP+ APPS
Sbjct: 642 LSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAA 701
Query: 78 SSAAAPRQPGLMAQMATTA 96
P P M+ +A
Sbjct: 702 PPLQVPPSPPASPPMSPSA 720
Score = 32.0 bits (71), Expect = 0.31
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPR-----PAPVAQPPAAAPPSTVGSSAAA 82
P +P + + +A P AP +AP P+P A PP+ APPS A
Sbjct: 320 PDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQA 379
Query: 83 P 83
P
Sbjct: 380 P 380
Score = 31.2 bits (69), Expect = 0.53
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 23/129 (17%)
Query: 37 GSRSHTSRMAPPA---SRAPQMRAA------PRPAPVA--QPPAAAPPSTVGS------- 78
G+R TS P + A + RAA PRPAP A +PP P +V S
Sbjct: 159 GARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTT 218
Query: 79 --SAAAPRQPGLMAQMATTAAGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQ 136
S AA R+P + A+ ++ S+ + A +G + G+ PA P + +P+
Sbjct: 219 EPSPAARRRPSAGGGLQRPASR-SLSSSATPLSSPARSGPSARGTPRAPAHP--SQPKPK 275
Query: 137 GTQPAQQQQ 145
G Q + Q
Sbjct: 276 GLQALRPPQ 284
Score = 30.8 bits (68), Expect = 0.69
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPG 87
P +VP P + S A P R P + AAP P+ PP +PP+++ S A P
Sbjct: 733 PPLQVPPSPPASPPMSPSATPPPRVPPLLAAP---PLQVPP--SPPASLPMSPLAKPPPQ 787
Query: 88 LMAQMAT 94
+AT
Sbjct: 788 APPALAT 794
Score = 30.4 bits (67), Expect = 0.90
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 48 PASRAPQMRAA-PRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTAAGVAVGSAVG 106
P S P A P P+P AA + G+S+ +P+Q A++ G S V
Sbjct: 981 PESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQ----ARLGELPLGALQASVVQ 1036
Query: 107 HILGH----AITGGFSGGSNAEP 125
H+L A G +GGS P
Sbjct: 1037 HLLSRTLLLAAAEGAAGGSGGGP 1059
Score = 30.0 bits (66), Expect = 1.2
Identities = 16/51 (31%), Positives = 19/51 (37%)
Query: 46 APPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTA 96
APP P A+P +P A PP PP P P M+ A
Sbjct: 732 APPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLA 782
Score = 30.0 bits (66), Expect = 1.2
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAP-PSTVGSSAAAPRQP 86
P +VP P + S +A P +AP A P + PPA+ P + SA+ P P
Sbjct: 764 PPLQVPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSP 823
Score = 29.3 bits (64), Expect = 2.0
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 37 GSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGLMAQMATTA 96
G+ + T P P+ +PRP P P A +G++ A R+P +A A
Sbjct: 11 GAAARTPAARAPGLLTPRPPGSPRPPPPVTPAAL---RVLGAAGAVGRKP-----LAERA 62
Query: 97 AGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQP 146
G+ G+ + A +G S+ PA + PA+ P
Sbjct: 63 GGIG-GATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSP 111
Score = 29.3 bits (64), Expect = 2.0
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMRA--------APRPAPVAQPPAAAPPSTVGSS 79
P + P P + S +A P+ +AP A +P P+P Q P + P S S
Sbjct: 628 PPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSP 687
Query: 80 AAAP 83
+A P
Sbjct: 688 SATP 691
Score = 29.3 bits (64), Expect = 2.0
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 31 RVPRIPGSRSHTSRMAPPASRAPQMRAAP----RPAPVAQPPAAAP--PSTVG--SSAAA 82
+ P P + S +A P +AP + AAP P+P A P AP P T G +S +
Sbjct: 810 QAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG 869
Query: 83 PR 84
PR
Sbjct: 870 PR 871
Score = 27.3 bits (59), Expect = 7.6
Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPG 87
PS R P + R PASR+ A P +P P+A + + P+ G
Sbjct: 220 PSPAARRRPSAGGGLQR---PASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKG 276
Query: 88 LMA--QMATTAAGVAVGSAVGHILGHAITGGFSGGSNAEPARP 128
L A T A+G + + G+ A P P
Sbjct: 277 LQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSGTKARPVPP 319
Score = 26.9 bits (58), Expect = 9.9
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 1 MKLSVLERSKPGGRSHLALRWLSHVRRPSRRVP-RIPGSRSHTSRMAPPASRAPQMRAAP 59
+ +S L + P LA L + P P + P S S + M+P A+ PQ A P
Sbjct: 776 LPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQ--APP 833
Query: 60 -RPAPVAQPPAAAPPSTVGSSAAAPRQPG 87
AP+ Q P + P S + P PG
Sbjct: 834 VLAAPLLQVPPSPPASPTLQAPRRPPTPG 862
>gi|22748651 ORAI calcium release-activated calcium modulator 3
[Homo sapiens]
Length = 295
Score = 38.5 bits (88), Expect = 0.003
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 28 PSRRVP--RIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQ 85
P+ VP R+PG+ + + PAS P R++ AP PA P G A
Sbjct: 184 PTPMVPTSRVPGTLAPVATSLSPASNLP--RSSASAAPSQAEPACPPRQACGGGGA--HG 239
Query: 86 PGLMAQMATTAAGVAVG 102
PG A MA+TA V VG
Sbjct: 240 PGWQAAMASTAIMVPVG 256
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 38.1 bits (87), Expect = 0.004
Identities = 22/77 (28%), Positives = 32/77 (41%)
Query: 29 SRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQPGL 88
S+++P +P S P +AP A PR AP P+ P+ S AP P
Sbjct: 419 SQKLPAVPASSWKPPPGLAPPQKAPAASAPPRKAPAVPAPSQKAPAVPAPSQKAPAIPAP 478
Query: 89 MAQMATTAAGVAVGSAV 105
+ + +A SAV
Sbjct: 479 SRKASAASASPRKASAV 495
Score = 32.3 bits (72), Expect = 0.24
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 25 VRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPA-PVAQPPAAAPP--------ST 75
V PS++ P +P + P+ +A A+PR A V PP PP T
Sbjct: 455 VPAPSQKAPAVPAPSQKAPAIPAPSRKASAASASPRKASAVPAPPQKTPPPSQKAPSVPT 514
Query: 76 VGSSAAAPRQP 86
+ A +P P
Sbjct: 515 IPQKAVSPTAP 525
Score = 29.3 bits (64), Expect = 2.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQ 85
P R+ P +P PA AP +A PAP + AA+ S+ AP Q
Sbjct: 448 PPRKAPAVPAPSQKA-----PAVPAPSQKAPAIPAPSRKASAASASPRKASAVPAPPQ 500
>gi|4505101 microtubule-associated protein 7 [Homo sapiens]
Length = 749
Score = 38.1 bits (87), Expect = 0.004
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 31 RVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPP-AAAPPSTVGSSAAAPRQPG 87
R P P MAP + AP +AP PAPV P +AP STV +SA+ G
Sbjct: 415 RTPAEPEVGPAAPAMAPAPASAPAPASAPAPAPVPTPAMVSAPSSTVNASASVKTSAG 472
Score = 26.9 bits (58), Expect = 9.9
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 28 PSRRVPRIPGSRSHTSRMAPPASRAPQMRAAP------RPA-------PVAQPPAAAPPS 74
PS+ +P +PG+ TS + P + +A + P RP P + P P
Sbjct: 332 PSKSLPHLPGTPRPTSSLPPGSVKAAPAQVRPPSPGNIRPVKREVKVEPEKKDPEKEPQK 391
Query: 75 TVGSSAAAPRQPGLMAQMAT----TAAGVAVGSA 104
+ R P + + AT T A VG A
Sbjct: 392 VANEPSLKGRAPLVKVEEATVEERTPAEPEVGPA 425
>gi|169209217 PREDICTED: similar to hCG2042704 [Homo sapiens]
Length = 511
Score = 37.7 bits (86), Expect = 0.006
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 27 RPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVGSSAAAPRQP 86
RP+R V R G +H PP SR +APRP P A P + +PP V +AA Q
Sbjct: 28 RPARAVRR-GGHPAHFCWSRPPVSRERDDPSAPRPVP-ALPSSPSPPPPVRRPSAAREQQ 85
Query: 87 G 87
G
Sbjct: 86 G 86
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 37.4 bits (85), Expect = 0.007
Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 6/115 (5%)
Query: 27 RPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAP----PSTVGSSAAA 82
RPS G R ++APP R R P PP P P GSS A
Sbjct: 6 RPSAGAGAGAGRRPAARQVAPPGGPXSLARTHSRRHPDHAPPPGRPSCSRPLCAGSSCLA 65
Query: 83 PRQPGLMAQMATTAAGVAVGSAVGHIL--GHAITGGFSGGSNAEPARPDITYQEP 135
+P +A G+ V +A +L G TG + P R D P
Sbjct: 66 TPEPARAPSIAEPGPGIPVAAAKPGVLPGGGGCTGARTENPPLSPTRGDCRVPVP 120
Score = 28.9 bits (63), Expect = 2.6
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 19/120 (15%)
Query: 17 LALRWLSHVRRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTV 76
++LRW S R +R PG P A +A M P AP QPP+
Sbjct: 124 ISLRWRSG--REAR-----PGGPQAGRAGDPKADQA--MHLQPAWAPKLQPPSVCRQQPP 174
Query: 77 GSSAAAPRQPGLMAQ-MATTAAGVAVGSAVGHILGHAITGGFSGGSNAEPARPDITYQEP 135
G+S A P P L + G A SA+ + GG N A + ++P
Sbjct: 175 GNSRARPHSPHLGTRARCPCGCGEARRSALQQL---------HGGGNRPSAPSRVAVEDP 225
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.4 bits (85), Expect = 0.007
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 26 RRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVG----SSAA 81
RRP + R G+ H S APPA+ PA AQPPA P S + S
Sbjct: 103 RRPGKPPRRPKGAAGHPS--APPAAA---------PAAPAQPPAPRPESQLSDRPQSWEQ 151
Query: 82 APRQPGLMAQMATTAAGVAVGSA 104
PR PG A+ A AA A G A
Sbjct: 152 KPRGPGRSARSAGAAAPPAGGLA 174
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.4 bits (85), Expect = 0.007
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
Query: 26 RRPSRRVPRIPGSRSHTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSTVG----SSAA 81
RRP + R G+ H S APPA+ PA AQPPA P S + S
Sbjct: 103 RRPGKPPRRPKGAAGHPS--APPAAA---------PAAPAQPPAPRPESQLSDRPQSWEQ 151
Query: 82 APRQPGLMAQMATTAAGVAVGSA 104
PR PG A+ A AA A G A
Sbjct: 152 KPRGPGRSARSAGAAAPPAGGLA 174
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,923,124
Number of Sequences: 37866
Number of extensions: 500861
Number of successful extensions: 10465
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 771
Number of HSP's that attempted gapping in prelim test: 6433
Number of HSP's gapped (non-prelim): 3802
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.