Guide to the Human Genome
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Name: LOC729516 Sequence: fasta or formatted (474aa) NCBI GI: 239741053
Description:

PREDICTED: similar to Putative PRAME family member 24

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         24           2
 C cysteine            4.9         23           2
 D aspartate           4.4         21           1
 E glutamate           6.8         32           2
 F phenylalanine       4.6         22           1
 G glycine             4.2         20           1
 H histidine           2.1         10           1
 I isoleucine          3.8         18           2
 K lysine              3.8         18           1
 L leucine            17.3         82           2
 M methionine          3.2         15           1
 N asparagine          2.3         11           1
 P proline             5.5         26           2
 Q glutamine           5.5         26           2
 R arginine            6.3         30           3
 S serine              7.6         36           1
 T threonine           5.1         24           1
 V valine              5.5         26           2
 W tryptophan          1.1          5           1
 Y tyrosine            1.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative PRAME family member ... 
PRAMEF8               0.999   PRAME family member 8 
PRAMEF7               0.998   PRAME family member 7 
PRAMEF12              0.835   PRAME family member 12 
PRAMEF5               0.602   PRAME family member 5 
PRAMEF6               0.602   PRAME family member 6 
PRAMEF23              0.596   PREDICTED: PRAME family member 23 
PRAMEF15              0.591   PRAME family member 15 
PRAMEF9               0.591   PRAME family member 9 
PRAMEF20              0.581   PRAME family member 20 
PRAMEF21              0.581   PRAME family member 21 
PRAMEF11              0.580   PREDICTED: PRAME family member 11 
PRAMEF4               0.579   PRAME family member 4 
PRAMEF25              0.535   PREDICTED: PRAME family member 25-like 
PRAMEF11              0.518   PRAME family member 11 
PRAME                 0.461   preferentially expressed antigen in melanoma 
PRAME                 0.461   preferentially expressed antigen in melanoma 
PRAME                 0.461   preferentially expressed antigen in melanoma 
PRAME                 0.461   preferentially expressed antigen in melanoma 
PRAME                 0.461   preferentially expressed antigen in melanoma 
PRAMEF1               0.456   PRAME family member 1 
PRAMEF18              0.454   PRAME family member 18 
PRAMEF13              0.454   PRAME family member 13 
PRAMEF10              0.452   PRAME family member 10 
PRAMEF19              0.451   PRAME family member 19 
PRAMEF22              0.447   PRAME family member 22 
PRAMEF3               0.447   PRAME family member 3 
PRAMEF17              0.446   PRAME family member 17 
PRAMEF16              0.444   PRAME family member 16 
PRAMEF2               0.443   PRAME family member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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