Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239740935
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239740935 PREDICTED: similar to Apoptosis-related protein 2
[Homo sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745861 PREDICTED: similar to Apoptosis-related protein 2 [... 231 7e-62
gi|239740957 PREDICTED: similar to Apoptosis-related protein 2 [... 231 7e-62
gi|239740935 PREDICTED: similar to Apoptosis-related protein 2 [... 231 7e-62
gi|239745853 PREDICTED: similar to Apoptosis-related protein 2 [... 228 1e-60
gi|4505035 lymphotoxin-beta isoform a [Homo sapiens] 30 0.54
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 28 1.6
gi|21361101 MAP kinase-interacting serine/threonine kinase 1 iso... 27 2.7
gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens] 27 3.5
gi|239749902 PREDICTED: similar to hCG2040253 [Homo sapiens] 27 3.5
gi|239744202 PREDICTED: similar to hCG2040253 [Homo sapiens] 27 3.5
gi|4505781 phosphorylase kinase, alpha 2 (liver) [Homo sapiens] 27 3.5
gi|239750127 PREDICTED: hypothetical protein XP_002347282 [Homo ... 27 4.6
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 27 4.6
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 27 4.6
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 27 4.6
gi|108796653 phosphoglycolate phosphatase [Homo sapiens] 27 4.6
gi|239756524 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo ... 26 6.0
gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo ... 26 6.0
gi|7662494 Kruppel-like factor 15 [Homo sapiens] 26 6.0
gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens] 26 6.0
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 26 7.8
gi|31317301 nitric oxide synthase 1 (neuronal) adaptor protein i... 26 7.8
gi|205277334 nitric oxide synthase 1 (neuronal) adaptor protein ... 26 7.8
gi|14149631 ring finger protein 112 [Homo sapiens] 26 7.8
>gi|239745861 PREDICTED: similar to Apoptosis-related protein 2
[Homo sapiens]
Length = 111
Score = 231 bits (590), Expect = 7e-62
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL 60
MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL
Sbjct: 1 MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL 60
Query: 61 LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV 111
LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV
Sbjct: 61 LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV 111
>gi|239740957 PREDICTED: similar to Apoptosis-related protein 2
[Homo sapiens]
Length = 111
Score = 231 bits (590), Expect = 7e-62
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL 60
MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL
Sbjct: 1 MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL 60
Query: 61 LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV 111
LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV
Sbjct: 61 LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV 111
>gi|239740935 PREDICTED: similar to Apoptosis-related protein 2
[Homo sapiens]
Length = 111
Score = 231 bits (590), Expect = 7e-62
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL 60
MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL
Sbjct: 1 MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL 60
Query: 61 LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV 111
LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV
Sbjct: 61 LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV 111
>gi|239745853 PREDICTED: similar to Apoptosis-related protein 2
[Homo sapiens]
Length = 111
Score = 228 bits (580), Expect = 1e-60
Identities = 109/111 (98%), Positives = 110/111 (99%)
Query: 1 MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL 60
MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL
Sbjct: 1 MVSLWVEDTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGL 60
Query: 61 LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPAAV 111
LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTS+QAQAQACENLV AAV
Sbjct: 61 LWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSIQAQAQACENLVRAAV 111
>gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]
Length = 244
Score = 29.6 bits (65), Expect = 0.54
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 8 DTFLSPGFGFAHVACSGLGMKQKRKAASSEPTSEVAL---GGSAGPVRSHLHPEGLLWCS 64
+T LSPG AH+ +G K + E T E A G P+ L+
Sbjct: 80 ETDLSPGLPAAHL----IGAPLKGQGLGWETTKEQAFLTSGTQFSDAEGLALPQDGLYYL 135
Query: 65 RCFFSLR----PKGTEPPGRSAGLQGATERSG 92
C R P G +P GRS L+ + R+G
Sbjct: 136 YCLVGYRGRAPPGGGDPQGRSVTLRSSLYRAG 167
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 52 RSHLHPEGLLWCSRCFFSLRPKGTEP-PGRSAGLQGATERSGWTSVQAQAQACENLVPAA 110
+S+ HP L + S P+G+E P S+G + +T G S A+ Q+ NL PAA
Sbjct: 400 KSYTHPSSLRKHMKVHES-SPQGSESSPAASSGYESSTP-PGLVSPSAEPQSSSNLSPAA 457
>gi|21361101 MAP kinase-interacting serine/threonine kinase 1
isoform 1 [Homo sapiens]
Length = 465
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 16 GFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGLL 61
G++ +A SGL +S PTS + G+ G L PE +L
Sbjct: 173 GWSAMAPSGLTAAPTSLGSSDPPTSASQVAGTTGIAHRDLKPENIL 218
>gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens]
Length = 362
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 78 PGRSAGLQGATERSGWTSVQAQAQACENLVPAAV 111
PG AGL G+ + SGW +A+A + V A+
Sbjct: 120 PGLVAGLLGSEDHSGWVRPALRARAPDAFVGPAL 153
>gi|239749902 PREDICTED: similar to hCG2040253 [Homo sapiens]
Length = 251
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 21 ACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHP 57
ACS G Q+RKAA++ + E G+ G S P
Sbjct: 126 ACSNKGTAQERKAAATPESQEPQAKGAEGNAASEEAP 162
>gi|239744202 PREDICTED: similar to hCG2040253 [Homo sapiens]
Length = 251
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 21 ACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHP 57
ACS G Q+RKAA++ + E G+ G S P
Sbjct: 126 ACSNKGTAQERKAAATPESQEPQAKGAEGNAASEEAP 162
>gi|4505781 phosphorylase kinase, alpha 2 (liver) [Homo sapiens]
Length = 1235
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 16 GFAHVACSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLH--PEGLLWCSRCFFSLRPK 73
G + S +GM + A+ E E+ L G+ G +S +H P+ + C FS+ P+
Sbjct: 193 GIPELNASSVGMAK----AALEAIDELDLFGAHGGRKSVIHVLPDEVEHCQSILFSMLPR 248
Query: 74 GTEPPGRSAGL 84
+ AGL
Sbjct: 249 ASTSKEIDAGL 259
>gi|239750127 PREDICTED: hypothetical protein XP_002347282 [Homo
sapiens]
Length = 457
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 22 CSGLGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGLLWCSRCFFSLRPKGTEPPGRS 81
CS M + + P + VA G AG +++H H + R R +G PGR
Sbjct: 163 CSAFHMSSISQLHAEGPDALVAAGRQAGALQTHAHVGVVDGEERGVAGGRAQG---PGRG 219
Query: 82 AGLQGA 87
AG + A
Sbjct: 220 AGQEEA 225
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/49 (32%), Positives = 18/49 (36%)
Query: 31 RKAASSEPTSEVALGGSAGPVRSHLHPEGLLWCSRCFFSLRPKGTEPPG 79
R ++ P E G GP P LL C RC L T P G
Sbjct: 111 RPLSAENPGGEPEAPGEGGPAPEPRAPRDLLGCPRCRRLLHKPVTLPCG 159
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 26.6 bits (57), Expect = 4.6
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 18 AHVACSGLGMKQKRKAASSE------PTSEVALGGSAGPVRSHLHPEGLLWCSRCFFSLR 71
A ++ SG K+K+K + P S +ALG S PV H+ GL LR
Sbjct: 101 AKLSTSGAIKKKKKKKEKKDKKDRDPPKSSLALGSSLAPV--HVPLGGLA-------PLR 151
Query: 72 PKGTEPPGRSAGLQGATERSGWTSVQAQAQACENLVPA 109
PP + L+G+ S +SV++ Q E ++P+
Sbjct: 152 GLVDTPP---SALRGSQSVSLGSSVESGRQLGELMLPS 186
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 26.6 bits (57), Expect = 4.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 60 LLWCSRCFFSLRPKGTEPPGRSAGLQ 85
+LW FF GTEPP +A L+
Sbjct: 188 VLWTVESFFQCVGSGTEPPASTAALR 213
>gi|108796653 phosphoglycolate phosphatase [Homo sapiens]
Length = 321
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 30 KRKAASSEPTSEVALGGSAGPVRSHLHPEGLLWCSRCFFSLRPKGTEPP 78
K +AA +E + GG AGP S L G +C+ + R G P
Sbjct: 72 KTRAAYAEKLRRLGFGGPAGPGAS-LEVFGTAYCTALYLRQRLAGAPAP 119
>gi|239756524 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 13 PGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAG------------------PVRSH 54
PG G H Q++KAA+S T+ + GG+ G V H
Sbjct: 33 PGKGAPH-CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQH 91
Query: 55 LHPEG 59
LHPEG
Sbjct: 92 LHPEG 96
>gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo
sapiens]
Length = 176
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 13 PGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAG------------------PVRSH 54
PG G H Q++KAA+S T+ + GG+ G V H
Sbjct: 33 PGKGAPH-CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQH 91
Query: 55 LHPEG 59
LHPEG
Sbjct: 92 LHPEG 96
>gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo
sapiens]
Length = 176
Score = 26.2 bits (56), Expect = 6.0
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 19/65 (29%)
Query: 13 PGFGFAHVACSGLGMKQKRKAASSEPTSEVALGGSAG------------------PVRSH 54
PG G H Q++KAA+S T+ + GG+ G V H
Sbjct: 33 PGKGAPH-CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQH 91
Query: 55 LHPEG 59
LHPEG
Sbjct: 92 LHPEG 96
>gi|7662494 Kruppel-like factor 15 [Homo sapiens]
Length = 416
Score = 26.2 bits (56), Expect = 6.0
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 47 SAGPVRSHLHPEGLLWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWTSVQAQAQ 101
SAGP +SHLHP G RC P G G + G G G V Q Q
Sbjct: 174 SAGPHKSHLHP-GSSGRERC---SPPPGGASAGGAQGPGGGPTPDGPIPVLLQIQ 224
>gi|61966701 dorsal neural-tube nuclear protein [Homo sapiens]
Length = 398
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 34 ASSEPTSEVALGGSAGPVRSHLHP 57
ASS PTS ALGG G +R P
Sbjct: 239 ASSSPTSTPALGGRRGLLRCRSQP 262
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 25.8 bits (55), Expect = 7.8
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 37 EPTSEVALGGSAGPVRSHLHPEGLLWCSRCFFSLRPKGTEPPGRSAGLQGATERSGWT 94
+P E++LG + GP+ + P P+ EPP AG G G+T
Sbjct: 977 QPPGELSLGLATGPLSTPETP--------------PRQPEPPSLVAGASGGASPVGFT 1020
>gi|31317301 nitric oxide synthase 1 (neuronal) adaptor protein
isoform 1 [Homo sapiens]
Length = 506
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/52 (32%), Positives = 19/52 (36%)
Query: 38 PTSEVALGGSAGPVRSHLHPEGLLWCSRCFFSLRPKGTEPPGRSAGLQGATE 89
P L A P S L L CF L P+ T PP + L G E
Sbjct: 402 PPLGAGLADFAHPAGSPLGRRDCLVKLECFRFLPPEDTPPPAQGEALLGGLE 453
>gi|205277334 nitric oxide synthase 1 (neuronal) adaptor protein
isoform 2 [Homo sapiens]
Length = 211
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/52 (32%), Positives = 19/52 (36%)
Query: 38 PTSEVALGGSAGPVRSHLHPEGLLWCSRCFFSLRPKGTEPPGRSAGLQGATE 89
P L A P S L L CF L P+ T PP + L G E
Sbjct: 107 PPLGAGLADFAHPAGSPLGRRDCLVKLECFRFLPPEDTPPPAQGEALLGGLE 158
>gi|14149631 ring finger protein 112 [Homo sapiens]
Length = 632
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 25 LGMKQKRKAASSEPTSEVALGGSAGPVRSHLHPEGLLWCSRCFFSLRPKGTEPP 78
LG+ + A PT + L P+ G +C RCF + R G EPP
Sbjct: 42 LGLGPQPMAPRELPTCSICLERLRDPISLDC---GHDFCIRCFSTHRLPGCEPP 92
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,158,097
Number of Sequences: 37866
Number of extensions: 237808
Number of successful extensions: 728
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 25
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.