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Search of human proteins with 239509076
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239509076 PREDICTED: hypothetical protein [Homo sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169171580 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|113419324 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|113418864 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|239509076 PREDICTED: hypothetical protein [Homo sapiens] 404 e-113
gi|208431824 forkhead box I3 [Homo sapiens] 44 1e-04
gi|147902746 MEX3A protein [Homo sapiens] 42 4e-04
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 41 6e-04
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 41 6e-04
gi|61966763 hypothetical protein LOC390667 [Homo sapiens] 41 8e-04
gi|30795231 brain abundant, membrane attached signal protein 1 [... 40 0.001
gi|11386183 WAS protein family, member 2 [Homo sapiens] 39 0.002
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.002
gi|210032580 SET domain containing 1B [Homo sapiens] 39 0.004
gi|23510413 sorting nexin 26 [Homo sapiens] 38 0.005
gi|46409372 G protein-coupled receptor 153 [Homo sapiens] 38 0.005
gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-ri... 38 0.006
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 38 0.006
gi|239747395 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239741221 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|150170670 piccolo isoform 2 [Homo sapiens] 37 0.011
gi|150378539 piccolo isoform 1 [Homo sapiens] 37 0.011
gi|13375632 homeobox D1 [Homo sapiens] 37 0.014
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 37 0.014
gi|239753576 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 37 0.014
gi|239748084 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 37 0.014
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 37 0.014
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 37 0.014
>gi|169171580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 404 bits (1039), Expect = e-113
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ 60
MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ
Sbjct: 1 MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ 60
Query: 61 QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD
Sbjct: 61 QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
Query: 121 LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL 180
LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL
Sbjct: 121 LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL 180
Query: 181 HLAPVGWGTTVSVSLVL 197
HLAPVGWGTTVSVSLVL
Sbjct: 181 HLAPVGWGTTVSVSLVL 197
>gi|113419324 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 404 bits (1039), Expect = e-113
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ 60
MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ
Sbjct: 1 MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ 60
Query: 61 QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD
Sbjct: 61 QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
Query: 121 LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL 180
LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL
Sbjct: 121 LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL 180
Query: 181 HLAPVGWGTTVSVSLVL 197
HLAPVGWGTTVSVSLVL
Sbjct: 181 HLAPVGWGTTVSVSLVL 197
>gi|113418864 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 404 bits (1039), Expect = e-113
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ 60
MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ
Sbjct: 1 MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ 60
Query: 61 QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD
Sbjct: 61 QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
Query: 121 LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL 180
LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL
Sbjct: 121 LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL 180
Query: 181 HLAPVGWGTTVSVSLVL 197
HLAPVGWGTTVSVSLVL
Sbjct: 181 HLAPVGWGTTVSVSLVL 197
>gi|239509076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 404 bits (1039), Expect = e-113
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ 60
MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ
Sbjct: 1 MDFIIPSDISAPILGRVPGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDGQ 60
Query: 61 QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD
Sbjct: 61 QAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
Query: 121 LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL 180
LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL
Sbjct: 121 LGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKPCAL 180
Query: 181 HLAPVGWGTTVSVSLVL 197
HLAPVGWGTTVSVSLVL
Sbjct: 181 HLAPVGWGTTVSVSLVL 197
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 43.5 bits (101), Expect = 1e-04
Identities = 40/127 (31%), Positives = 50/127 (39%), Gaps = 21/127 (16%)
Query: 70 ARRVAPEARPPFLAGY---EHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGR 126
A AP A P A Y ++ P AA +L PG P AAA LG P
Sbjct: 22 ATAAAPGAPPAARAPYGLADYAAPPAAAANPYLWLNGPGVGGPPSAAAAAAAAYLGAPPP 81
Query: 127 GPSPSQASGPSRSPRVPPAHPELSGSR----------PRSPRRPRGS------IAAAREA 170
P P A+GP P PPA S+ P SP P G A+RE
Sbjct: 82 PPPPGAAAGPFLQP--PPAAGTFGCSQRPFAQPAPAAPASPAAPAGPGELGWLSMASRED 139
Query: 171 LRELLKP 177
L ++++P
Sbjct: 140 LMKMVRP 146
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 41.6 bits (96), Expect = 4e-04
Identities = 37/124 (29%), Positives = 51/124 (41%), Gaps = 18/124 (14%)
Query: 66 GKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPG 125
GK+ E PP AG E+ ATP + F S ++ S +A G PG
Sbjct: 376 GKQDVYYGVAETSPPLWAGQEN------ATPTSVLFSSASSSSSS-----SAKARAGPPG 424
Query: 126 RGPSPSQASGPSRS--PRVPPAHP-----ELSGSRPRSPRRPRGSIAAAREALRELLKPC 178
SP+ ++GP + PR PP P +L G RSP R + + L PC
Sbjct: 425 AHRSPATSAGPELAGLPRRPPGEPLQGFSKLGGGGLRSPGGGRDCMVCFESEVTAALVPC 484
Query: 179 ALHL 182
+L
Sbjct: 485 GHNL 488
Score = 27.7 bits (60), Expect = 6.6
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 113 PTAAAHRDLGEPGRGPSPSQ-ASGPSRSPRVPPAHPEL------SGSRPRSPRRPRGSIA 165
P A + G G G +P+Q A+ P +P PPA P + P+ P P+G+
Sbjct: 53 PPAPTAGEDGGGGGGGAPAQPAAPPQPAPPPPPAAPPAAPTAAPAAQTPQPPTAPKGASD 112
Query: 166 AAREAL 171
A AL
Sbjct: 113 AKLCAL 118
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 41.2 bits (95), Expect = 6e-04
Identities = 52/178 (29%), Positives = 64/178 (35%), Gaps = 17/178 (9%)
Query: 3 FIIPSDISAPILGRV---PGSLPNPLTTVAGGWCAAEILLHGPALCSKVTQLPDKESRDG 59
FI P A + R+ P + P L V G A L G L + D+E+
Sbjct: 56 FIHPPSSRAAVHSRLRAAPAAAPRLLPRVLAGAPARTGALAGSRLRAAAAAAHDQEA--- 112
Query: 60 QQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGA-----AVPSC--F 112
A G+R RR P + + H PRA PG + P C
Sbjct: 113 --AAPTGRRWRRRPGPSPPLQPRSRHPHTRYPRAVPEATPLRPPPGTRPRAKSRPGCRSS 170
Query: 113 PTAAAHRDLGEPG--RGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAR 168
P A R GE G RG +A P PR PA E P SP R G AA +
Sbjct: 171 PFPARSRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAAGK 228
Score = 30.0 bits (66), Expect = 1.3
Identities = 30/100 (30%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 72 RVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPG-AAVPSCFPTAAAHRD-LGEPGRGPS 129
R EA PP PRPRA PG RSP PS P + R+ G+G +
Sbjct: 177 RTPGEAGPP-----RGDPRPRAPRPGDHPRRSPALRETPSLSPPSPGRRNGKRAAGKGTT 231
Query: 130 PSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAARE 169
P P P E R R RG++ A +
Sbjct: 232 PQPQPPP---PPCATRREEDMALRTRDRTSSRGTVFRAAD 268
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 41.2 bits (95), Expect = 6e-04
Identities = 37/130 (28%), Positives = 48/130 (36%), Gaps = 16/130 (12%)
Query: 41 GPALCSKVTQLPDKESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLS 100
GP LC L ++++ Q +R + + P + P G PG +
Sbjct: 218 GPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIP--------APGPIP 269
Query: 101 FRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRS-PRVP-PAHPELSGSRP---- 154
PGA S P A LG PG GP P + S PR P P P G P
Sbjct: 270 AAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGL 329
Query: 155 --RSPRRPRG 162
+P PRG
Sbjct: 330 LGDAPNDPRG 339
>gi|61966763 hypothetical protein LOC390667 [Homo sapiens]
Length = 473
Score = 40.8 bits (94), Expect = 8e-04
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 57 RDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPR-AATPGFLSFRSPGAAV--PSCFP 113
R Q+A R +A+R A + L G H R AA G L PG A P+ P
Sbjct: 127 RSQQRARERKAHKAQRDALQDSLARLEGLVHSQGARLAALEGRLPVAHPGTAALGPALVP 186
Query: 114 TAAAHRDLGEPG----------------RGPSPSQASGPSRSPRVPPA---HPELSGSRP 154
T +LG RGP P +S P + R PPA H LSG+ P
Sbjct: 187 TPTQPEELGPTSLKLQRDRQELRAASEHRGP-PQDSSAPLQGRREPPASGSHRVLSGTAP 245
Query: 155 RSPRR 159
+ PR+
Sbjct: 246 KDPRQ 250
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 40.0 bits (92), Expect = 0.001
Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 16/137 (11%)
Query: 42 PALCSKVTQLPDK--ESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQ-------PRPR 92
PA + + PD+ E + ++ G + A+ AP+A P G P
Sbjct: 48 PAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQE 107
Query: 93 AATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASG---PSRSPRVPPAHPEL 149
A PG + G P AAA + P G PS+ G + +P P A
Sbjct: 108 QAAPG----PAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPKKTEAPAAPAAQETK 163
Query: 150 SGSRPRSPRRPRGSIAA 166
S P S +P S AA
Sbjct: 164 SDGAPASDSKPGSSEAA 180
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 20/117 (17%)
Query: 62 AGLRGKRRARRVAPEARPPF---------LAGYEHQPRPRAATPGFLS---------FRS 103
+GL G +R+ V+P PP G+ P P P + F S
Sbjct: 284 SGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGS 343
Query: 104 PGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRP 160
PG P P+ H D P P P A P+ P PP G+ P P P
Sbjct: 344 PGTPPPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPP--PPLSQPTGGAPPPPPPPP 398
Score = 28.5 bits (62), Expect = 3.9
Identities = 26/101 (25%), Positives = 36/101 (35%), Gaps = 24/101 (23%)
Query: 75 PEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQAS 134
P PP A Y P P + P G A P P P GP P +
Sbjct: 365 PPPPPPPAADYPTLPPPPLSQP-------TGGAPPPPPPP---------PPPGPPPPPFT 408
Query: 135 GPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELL 175
G P +PP + + +P+ S+ A +A +LL
Sbjct: 409 GADGQPAIPPPLSDTT--------KPKSSLPAVSDARSDLL 441
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/131 (30%), Positives = 54/131 (41%), Gaps = 31/131 (23%)
Query: 42 PALCSKVTQLPDKESRDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSF 101
P + SK ++L + SR G ++ K RA AP A+ +G + P P+A P L
Sbjct: 1583 PEVDSK-SRLSPRRSRSGSSPEVKDKPRA---APRAQ----SGSDSSPEPKAPAPRALPR 1634
Query: 102 RSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRSPRVPP-AHPELSGSR------- 153
RS + GRGPSP +S SP PP + GSR
Sbjct: 1635 RSRSGS--------------SSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKT 1680
Query: 154 -PRSPRRPRGS 163
R+P R R S
Sbjct: 1681 KSRTPPRRRSS 1691
Score = 28.9 bits (63), Expect = 3.0
Identities = 27/103 (26%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 76 EARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASG 135
E RPP E P R S S ++ S ++++ S S +S
Sbjct: 2592 EGRPP-----EPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
Query: 136 PSRSPRVP----------PAHPELSGSRPRSPRRPRGSIAAAR 168
S SP P P P R RSPR+P S+ +R
Sbjct: 2647 SSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSR 2689
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 38.5 bits (88), Expect = 0.004
Identities = 33/96 (34%), Positives = 42/96 (43%), Gaps = 21/96 (21%)
Query: 76 EARPPFLAGYEHQPRPRAAT--PGFLSFRSPGAAVPSCFP---------TAAAHRDLGEP 124
+A+P A + H P P AT PGF S SP + FP A RD GE
Sbjct: 369 KAQPQDSATFAHTPPPAQATPAPGFKSAFSPYQTPVAHFPPPPEEPTATAAFGARDSGEF 428
Query: 125 GRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRP 160
R P+P P +PPA P L+ +P +P P
Sbjct: 429 RRAPAP---------PPLPPAEP-LAKEKPGTPPGP 454
Score = 32.7 bits (73), Expect = 0.20
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 6/78 (7%)
Query: 89 PRPRAATPGFLSFRSPGAAVPSC-FPTAAAHRDLGEPGRGPSPSQASG-----PSRSPRV 142
P+P TPG + +P P+ P L P P P P P
Sbjct: 657 PKPMVVTPGAAAVAAPSVLAPTLPLPPPPGFPPLPPPPPPPPPQPGFPMPPPLPPPPPPP 716
Query: 143 PPAHPELSGSRPRSPRRP 160
PPAHP ++ P P P
Sbjct: 717 PPAHPAVTVPPPPLPAPP 734
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 38.1 bits (87), Expect = 0.005
Identities = 34/111 (30%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 79 PPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSR 138
P FL Y P P P L + +P P + +L RGPSP+ +S S
Sbjct: 971 PDFLLSYP--PAPSCFPPDHLGYSAPQHPARRPTPPEPLYVNLALGPRGPSPASSSSSS- 1027
Query: 139 SPRVPPAHP-ELSGSRPRSPRRPRGSIAAAREALRELLKPCALHLAPVGWG 188
PPAHP S P PR P + R P H P WG
Sbjct: 1028 ----PPAHPRSRSDPGPPVPRLP--------QKQRAPWGPRTPHRVPGPWG 1066
>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
Length = 609
Score = 38.1 bits (87), Expect = 0.005
Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 62 AGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFL-------SFRSPGAAV---PSC 111
+G RG R + +P RP P PR+A+ L +F A+ P
Sbjct: 470 SGPRGARDSPPGSPRRRPG--------PGPRSASASLLPDAFALTAFECEPQALRRPPGP 521
Query: 112 FPTAAAHRDLGEPGRGPSPSQASGPSRSPRVPPAHPELSGSRP 154
FP A A D +PG P+P ++ S PR P AH RP
Sbjct: 522 FPAAPAAPDGADPGEAPTPPSSAQRSPGPR-PSAHSHAGSLRP 563
>gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-rich
carboxy-terminal domain, 4 [Homo sapiens]
Length = 184
Score = 37.7 bits (86), Expect = 0.006
Identities = 44/142 (30%), Positives = 52/142 (36%), Gaps = 22/142 (15%)
Query: 57 RDGQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAV------PS 110
R A G R + P A P G + RPR A G R PGA PS
Sbjct: 16 RPPSAAAAHGPHALRTLPPYAGP----GLDSGLRPRGAPLGPPPPRQPGALAYGAFGPPS 71
Query: 111 CF-------PTAAAHRDLGEPGRGPSPSQASGPSRSPRVPPA-HPELSGSRPRSPRRPRG 162
F P AA L +P P P +A+ P +P PP P S + P P G
Sbjct: 72 SFQPFPAVPPPAAGIAHL-QPVATPYPGRAAAPPNAPGGPPGPQPAPSAAAPPPPAHALG 130
Query: 163 SIAAA---REALRELLKPCALH 181
+ A EAL L LH
Sbjct: 131 GMDAELIDEEALTSLELELGLH 152
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 37.7 bits (86), Expect = 0.006
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 16/100 (16%)
Query: 73 VAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQ 132
V+ E P +AG P P+ + G P P + +P P P +
Sbjct: 23 VSQEESPSLIAGNPQGPSPQGGN------KPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 76
Query: 133 ASGP------SRSPRVPPAHPE----LSGSRPRSPRRPRG 162
GP SRSPR PP P+ G++P+ P P G
Sbjct: 77 PQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG 116
Score = 33.1 bits (74), Expect = 0.16
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 104 PGAAVPSCFPTAAAHRDLGEP--GRGPSPSQASGPSRSPRVPPAHPE----LSGSRPRSP 157
P P P +R G P G+ P SRSPR PP P+ G++P+ P
Sbjct: 113 PPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP 172
Query: 158 RRPRG 162
P G
Sbjct: 173 PPPPG 177
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 104 PGAAVPSCFPTAAAHRDLGEPGRGPS---PSQASGPSRSPRVPPAH----PELSGSRPRS 156
P P P ++ G P G P+Q S+S R PP P+ G+ P+
Sbjct: 235 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQG 294
Query: 157 PRRPRG 162
P P G
Sbjct: 295 PPPPAG 300
Score = 28.1 bits (61), Expect = 5.0
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 65 RGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEP 124
+G ++ + P +P + R + PG P P + G P
Sbjct: 185 QGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 244
Query: 125 GRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRG 162
+G + Q P P+ PPA GS+ +S R P G
Sbjct: 245 PQGGNKPQGPPPPGKPQGPPAQ---GGSKSQSARSPPG 279
Score = 27.7 bits (60), Expect = 6.6
Identities = 22/98 (22%), Positives = 33/98 (33%)
Query: 65 RGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEP 124
+G R + P +P + R + PG P P + G P
Sbjct: 124 QGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 183
Query: 125 GRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRG 162
+G Q P P+ PP + S S P +P+G
Sbjct: 184 PQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQG 221
>gi|239747395 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 37.4 bits (85), Expect = 0.008
Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 25/112 (22%)
Query: 74 APEARPPFLAGYEHQPRPRAATPGFLSFRSPGAA----VPSCFPTAAAHRDLGEPGRGPS 129
AP AR P H P P + G ++F PG C P A RD S
Sbjct: 10 APRARDP-----RHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKS 64
Query: 130 PSQASGPSRSPRVPPAHPELSGSRPRSPRR----------PRGSIAAAREAL 171
GP P +H PRSPRR PR + A A E L
Sbjct: 65 EEAEDGPESRSAPPWSH------TPRSPRRIGVLSLWPGAPRATFARAAENL 110
>gi|239741221 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 37.4 bits (85), Expect = 0.008
Identities = 34/112 (30%), Positives = 39/112 (34%), Gaps = 25/112 (22%)
Query: 74 APEARPPFLAGYEHQPRPRAATPGFLSFRSPGAA----VPSCFPTAAAHRDLGEPGRGPS 129
AP AR P H P P + G ++F PG C P A RD S
Sbjct: 10 APRARDP-----RHSPPPTSLKQGEVAFGEPGICTARFASCCCPRLTAWRDFENFSLEKS 64
Query: 130 PSQASGPSRSPRVPPAHPELSGSRPRSPRR----------PRGSIAAAREAL 171
GP P +H PRSPRR PR + A A E L
Sbjct: 65 EEAEDGPESRSAPPWSH------TPRSPRRIGVLSLWPGAPRATFARAAENL 110
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 37.0 bits (84), Expect = 0.011
Identities = 45/147 (30%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 41 GPALCSKVTQLPDKESRDGQQAGLRGKRRARRVAPEAR-----PPFLAGYEHQPRPRAA- 94
GP + + + +++S G+ AG+ +RRA A R PP AG +HQ RA+
Sbjct: 11 GPRVGVRKREEEEEKSSLGRAAGVESRRRAGEGAAGRRDGGWGPPGGAG-DHQTLQRASL 69
Query: 95 TPGFLS----FRSPGAAVPSCFPTAAAHRDLGEP------GRGPSPSQASGPSRSPR-VP 143
PG + R P A P A + L P G P P + P R PR +
Sbjct: 70 LPGGSADKDQEREPSLAARGTAPPAPPRQCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLA 129
Query: 144 PAHPELSGSRPRSPRR--PRGSIAAAR 168
P L + P +P R P G AA R
Sbjct: 130 PGPRGLFPAPPPAPARTGPAGKAAADR 156
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 37.0 bits (84), Expect = 0.011
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 21/175 (12%)
Query: 12 PILGRVPGSLPNPLT--TVAGGW---CAAEILLHGPALCSKVTQLPDKESRDG----QQA 62
P +G+ P P P T G A + L PA T+ P ++ G QQA
Sbjct: 395 PGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQA 454
Query: 63 GLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLG 122
G GK A++ P P L G +P P+ P + PG+A P
Sbjct: 455 G-PGKTSAQQTGPTKPPSQLPG-PAKPPPQQPGPAKPPPQQPGSAKPPS----------Q 502
Query: 123 EPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKP 177
+PG P Q GP++ P + +P S + + A+ + ++ KP
Sbjct: 503 QPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKP 557
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 64 LRGKRRARRVAPEARPPFLAGYEHQP---RPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
+RG+ + ++PP QP +P A PG + PG A P P+
Sbjct: 289 VRGESVKPSLPSPSKPPI-----QQPTPGKPPAQQPGHEKSQ-PGPAKPPAQPSGLTKPL 342
Query: 121 LGEPGRGPSPSQASGPSRSPRVP--PAHP--ELSGSRPRSPRRP 160
+PG P Q G ++ P P PA P + +GS S +P
Sbjct: 343 AQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQP 386
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 37.0 bits (84), Expect = 0.011
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 21/175 (12%)
Query: 12 PILGRVPGSLPNPLT--TVAGGW---CAAEILLHGPALCSKVTQLPDKESRDG----QQA 62
P +G+ P P P T G A + L PA T+ P ++ G QQA
Sbjct: 395 PGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQA 454
Query: 63 GLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLG 122
G GK A++ P P L G +P P+ P + PG+A P
Sbjct: 455 G-PGKTSAQQTGPTKPPSQLPG-PAKPPPQQPGPAKPPPQQPGSAKPPS----------Q 502
Query: 123 EPGRGPSPSQASGPSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLKP 177
+PG P Q GP++ P + +P S + + A+ + ++ KP
Sbjct: 503 QPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKP 557
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 64 LRGKRRARRVAPEARPPFLAGYEHQP---RPRAATPGFLSFRSPGAAVPSCFPTAAAHRD 120
+RG+ + ++PP QP +P A PG + PG A P P+
Sbjct: 289 VRGESVKPSLPSPSKPPI-----QQPTPGKPPAQQPGHEKSQ-PGPAKPPAQPSGLTKPL 342
Query: 121 LGEPGRGPSPSQASGPSRSPRVP--PAHP--ELSGSRPRSPRRP 160
+PG P Q G ++ P P PA P + +GS S +P
Sbjct: 343 AQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQP 386
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 36.6 bits (83), Expect = 0.014
Identities = 28/78 (35%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 90 RPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRSPRVPPAHPEL 149
RP A P F GA V SC P AAA PSPS + P+R PPA P+
Sbjct: 33 RPVALQPAFPLGNGDGAFV-SCLPLAAAR---------PSPSPPAAPARPSVPPPAAPQY 82
Query: 150 SGSRPRSPRRPRGSIAAA 167
+ P + AAA
Sbjct: 83 AQCTLEGAYEPGAAPAAA 100
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 36.6 bits (83), Expect = 0.014
Identities = 56/181 (30%), Positives = 66/181 (36%), Gaps = 43/181 (23%)
Query: 48 VTQLPDKESRDGQQAGL---RGKRRARRVAPEARPPFLAGYEHQPR----PRAATPGFLS 100
V + + S G GL GKRR AP + P +G PR P A T G L
Sbjct: 33 VREPEQRHSETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLH 92
Query: 101 FRSP---GAAVPSC----FPTAAAHRDLGEPGRGPSPSQASGP-SRSPRVPPA------- 145
F+ P GAA P + R EP P P A+ SR R PP+
Sbjct: 93 FQEPPPLGAATAGSRHRQKPPSPGSRHRWEP---PPPGAATATGSRHRREPPSPGATTAG 149
Query: 146 --HPELSGS--RPRSPRRPRG-SIAAAREALRELLKP----------CA---LHLAPVGW 187
H SGS R+P P + RE RE P CA A VGW
Sbjct: 150 SCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGW 209
Query: 188 G 188
G
Sbjct: 210 G 210
>gi|239753576 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 36.6 bits (83), Expect = 0.014
Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 82 LAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRSP- 140
LAG P P G R P + H +PGRGP S A+G SR+P
Sbjct: 245 LAGVRLPPPPGCGGSGARGLR------PEQLWSHVQHARCPQPGRGPDASGAAGRSRAPP 298
Query: 141 --RVPPAHPELSGSRPRSPRRPRG 162
VP A R R RRP G
Sbjct: 299 PAAVPAAWEGTDRRRGRRRRRPSG 322
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 36.6 bits (83), Expect = 0.014
Identities = 56/181 (30%), Positives = 66/181 (36%), Gaps = 43/181 (23%)
Query: 48 VTQLPDKESRDGQQAGL---RGKRRARRVAPEARPPFLAGYEHQPR----PRAATPGFLS 100
V + + S G GL GKRR AP + P +G PR P A T G L
Sbjct: 33 VREPEQRHSETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLH 92
Query: 101 FRSP---GAAVPSC----FPTAAAHRDLGEPGRGPSPSQASGP-SRSPRVPPA------- 145
F+ P GAA P + R EP P P A+ SR R PP+
Sbjct: 93 FQEPPPLGAATAGSRHRQKPPSPGSRHRWEP---PPPGAATATGSRHRREPPSPGATTAG 149
Query: 146 --HPELSGS--RPRSPRRPRG-SIAAAREALRELLKP----------CA---LHLAPVGW 187
H SGS R+P P + RE RE P CA A VGW
Sbjct: 150 SCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGW 209
Query: 188 G 188
G
Sbjct: 210 G 210
>gi|239748084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 423
Score = 36.6 bits (83), Expect = 0.014
Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 82 LAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQASGPSRSP- 140
LAG P P G R P + H +PGRGP S A+G SR+P
Sbjct: 245 LAGVRLPPPPGCGGSGARGLR------PEQLWSHVQHARCPQPGRGPDASGAAGRSRAPP 298
Query: 141 --RVPPAHPELSGSRPRSPRRPRG 162
VP A R R RRP G
Sbjct: 299 PAAVPAAWEGTDRRRGRRRRRPSG 322
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 36.6 bits (83), Expect = 0.014
Identities = 56/181 (30%), Positives = 66/181 (36%), Gaps = 43/181 (23%)
Query: 48 VTQLPDKESRDGQQAGL---RGKRRARRVAPEARPPFLAGYEHQPR----PRAATPGFLS 100
V + + S G GL GKRR AP + P +G PR P A T G L
Sbjct: 33 VREPEQRHSETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPREPPLPGAVTGGSLH 92
Query: 101 FRSP---GAAVPSC----FPTAAAHRDLGEPGRGPSPSQASGP-SRSPRVPPA------- 145
F+ P GAA P + R EP P P A+ SR R PP+
Sbjct: 93 FQEPPPLGAATAGSRHRQKPPSPGSRHRWEP---PPPGAATATGSRHRREPPSPGATTAG 149
Query: 146 --HPELSGS--RPRSPRRPRG-SIAAAREALRELLKP----------CA---LHLAPVGW 187
H SGS R+P P + RE RE P CA A VGW
Sbjct: 150 SCHLRSSGSTGTRRAPSHPAALQVPYTREGPREPTPPAGPQGFAGSFCAEGSRRGAEVGW 209
Query: 188 G 188
G
Sbjct: 210 G 210
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 36.6 bits (83), Expect = 0.014
Identities = 42/132 (31%), Positives = 49/132 (37%), Gaps = 31/132 (23%)
Query: 59 GQQAGLRGKRRARRVAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAH 118
G G +G+ R AP R P ATP RSP P C P A
Sbjct: 11 GGGGGGQGRHRHSSRAPGTRTP-------------ATPA----RSPRP--PLCAPRPA-- 49
Query: 119 RDLGEPGRGPSPSQASG--PSRSPRVPPAHPELSGSRPRSPRRPRGSIAAAREALRELLK 176
PGR SP A+G PS PA P L G P RR R A R ++ ++
Sbjct: 50 -----PGRAQSPVPAAGAVPSPPAAAHPARPALRGETPAPGRRGR---ATTRGEVQPSVR 101
Query: 177 PCALHLAPVGWG 188
P H G G
Sbjct: 102 PPLSHRPLRGGG 113
Score = 28.5 bits (62), Expect = 3.9
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 21/80 (26%)
Query: 80 PFLAGYEHQPRPRAATP-----GFLSFRSPGAAVPSCFPTAAAHRDL-------GEPGRG 127
P A + +P R TP G + R G PS P + HR L G PG+G
Sbjct: 66 PPAAAHPARPALRGETPAPGRRGRATTR--GEVQPSVRPPLS-HRPLRGGGMGRGRPGKG 122
Query: 128 PSPSQASGPSRSPRVPPAHP 147
P P+ PSR R+PPA P
Sbjct: 123 PPPN----PSR--RLPPAPP 136
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 36.6 bits (83), Expect = 0.014
Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 73 VAPEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSPSQ 132
V+ E P +AG P P+ + G P P + +P P P +
Sbjct: 23 VSQEESPSLIAGNPQGPSPQGGN------KPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 76
Query: 133 ASGP------SRSPRVPPAHPE---LSGSRPRSPRRPRGS 163
GP SRSPR PP P+ G +P+ P GS
Sbjct: 77 PQGPPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGGS 116
Score = 29.3 bits (64), Expect = 2.3
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 13/96 (13%)
Query: 75 PEARPPFLAGYEHQPRPRAATPGFLSFRSPGAAVPSCFPTAAAHRDLGEPGRGPSP---- 130
P+ PP P P G P S P + + G P +G P
Sbjct: 57 PQGPPPQGGNKPQGPPPPGKPQG-----PPPQGDKSRSPRSPPGKPQGPPPQGGKPQGPP 111
Query: 131 SQASGPSRSPRVPPAH----PELSGSRPRSPRRPRG 162
+Q S+S R PP P+ G+ P+ P P G
Sbjct: 112 AQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAG 147
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,301,768
Number of Sequences: 37866
Number of extensions: 641953
Number of successful extensions: 6446
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 695
Number of HSP's that attempted gapping in prelim test: 5075
Number of HSP's gapped (non-prelim): 1828
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.