Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239508927
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239508927 PREDICTED: hypothetical protein [Homo sapiens]
(60 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752799 PREDICTED: hypothetical protein [Homo sapiens] 133 3e-32
gi|239743252 PREDICTED: hypothetical protein [Homo sapiens] 133 3e-32
gi|239508927 PREDICTED: hypothetical protein [Homo sapiens] 133 3e-32
gi|239754626 PREDICTED: hypothetical protein [Homo sapiens] 124 2e-29
gi|239754666 PREDICTED: hypothetical protein [Homo sapiens] 118 1e-27
gi|239749222 PREDICTED: hypothetical protein XP_002346959 [Homo ... 118 1e-27
gi|239743299 PREDICTED: hypothetical protein XP_002342819 [Homo ... 118 1e-27
gi|239508982 PREDICTED: hypothetical protein [Homo sapiens] 118 1e-27
gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo ... 32 0.084
gi|4506321 protein tyrosine phosphatase, receptor type, N precur... 30 0.42
gi|18252045 ADAM metallopeptidase domain 33 isoform alpha prepro... 30 0.55
gi|24041040 ADAM metallopeptidase domain 33 isoform beta preprop... 30 0.55
gi|45505137 podocan [Homo sapiens] 29 0.71
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens] 28 1.6
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 28 1.6
gi|32189398 gastric intrinsic factor (vitamin B synthesis) precu... 28 2.1
gi|58533170 hepatocyte growth factor isoform 3 precursor [Homo s... 27 2.7
gi|33859835 hepatocyte growth factor isoform 1 preproprotein [Ho... 27 2.7
gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo ... 27 2.7
gi|239747867 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 27 3.5
gi|37693995 Kruppel-like factor 13 [Homo sapiens] 27 3.5
gi|239747259 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|32698704 tectonin beta-propeller repeat containing 1 [Homo sa... 27 4.6
gi|239752459 PREDICTED: hypothetical protein XP_002348282 [Homo ... 26 6.0
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 26 6.0
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 26 6.0
gi|66932999 testis-specific protein kinase 1 [Homo sapiens] 26 6.0
gi|149944560 forkhead box D4-like 2 [Homo sapiens] 26 6.0
gi|187423902 forkhead box D4-like 5 [Homo sapiens] 26 6.0
>gi|239752799 PREDICTED: hypothetical protein [Homo sapiens]
Length = 60
Score = 133 bits (335), Expect = 3e-32
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW
Sbjct: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
>gi|239743252 PREDICTED: hypothetical protein [Homo sapiens]
Length = 60
Score = 133 bits (335), Expect = 3e-32
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW
Sbjct: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
>gi|239508927 PREDICTED: hypothetical protein [Homo sapiens]
Length = 60
Score = 133 bits (335), Expect = 3e-32
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW
Sbjct: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
>gi|239754626 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 124 bits (311), Expect = 2e-29
Identities = 56/60 (93%), Positives = 58/60 (96%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
+AEAKGRRDLGLARVCP+RPGAGRRCTVSPREADLGPEKDT LDLP RPGPGPSGAEQPW
Sbjct: 44 VAEAKGRRDLGLARVCPRRPGAGRRCTVSPREADLGPEKDTRLDLPRRPGPGPSGAEQPW 103
>gi|239754666 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 118 bits (295), Expect = 1e-27
Identities = 54/60 (90%), Positives = 56/60 (93%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
+AEAKGRRDLGLARVCP+RPGAGRRCTVSPREADLGPEKD LDLP RPGPGPSGAEQ W
Sbjct: 63 VAEAKGRRDLGLARVCPRRPGAGRRCTVSPREADLGPEKDPRLDLPRRPGPGPSGAEQLW 122
>gi|239749222 PREDICTED: hypothetical protein XP_002346959 [Homo
sapiens]
Length = 122
Score = 118 bits (295), Expect = 1e-27
Identities = 54/60 (90%), Positives = 56/60 (93%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
+AEAKGRRDLGLARVCP+RPGAGRRCTVSPREADLGPEKD LDLP RPGPGPSGAEQ W
Sbjct: 63 VAEAKGRRDLGLARVCPRRPGAGRRCTVSPREADLGPEKDPRLDLPRRPGPGPSGAEQLW 122
>gi|239743299 PREDICTED: hypothetical protein XP_002342819 [Homo
sapiens]
Length = 122
Score = 118 bits (295), Expect = 1e-27
Identities = 54/60 (90%), Positives = 56/60 (93%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
+AEAKGRRDLGLARVCP+RPGAGRRCTVSPREADLGPEKD LDLP RPGPGPSGAEQ W
Sbjct: 63 VAEAKGRRDLGLARVCPRRPGAGRRCTVSPREADLGPEKDPRLDLPRRPGPGPSGAEQLW 122
>gi|239508982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 118 bits (295), Expect = 1e-27
Identities = 54/60 (90%), Positives = 56/60 (93%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
+AEAKGRRDLGLARVCP+RPGAGRRCTVSPREADLGPEKD LDLP RPGPGPSGAEQ W
Sbjct: 63 VAEAKGRRDLGLARVCPRRPGAGRRCTVSPREADLGPEKDPRLDLPRRPGPGPSGAEQLW 122
>gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo
sapiens]
Length = 529
Score = 32.3 bits (72), Expect = 0.084
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 4 AKGRRDLGLARVCPQRPGAG--RRCTVSPREADLGPEKDTHLDLPHRPGPGPSGA 56
A+ RD G A + P+RPG R R GPE+ HL P GPG GA
Sbjct: 129 ARKERDAGAADLSPRRPGRSGVARRPGDARTQSAGPERRAHLPGP-GAGPGFCGA 182
>gi|4506321 protein tyrosine phosphatase, receptor type, N precursor
[Homo sapiens]
Length = 979
Score = 30.0 bits (66), Expect = 0.42
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 17 PQRP----GAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQP 59
PQ P GAG ++SP +A+L P HL LP +P P PS + +P
Sbjct: 158 PQPPVGKGGAGASSSLSPLQAELLPPLLEHLLLPPQP-PHPSLSYEP 203
>gi|18252045 ADAM metallopeptidase domain 33 isoform alpha
preproprotein [Homo sapiens]
Length = 813
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 11 GLARVCPQRPGAG-RRCTVSPRE--ADLGPEKDTHLDLP----HRPGPGPSGAEQPW 60
GLA C + PGA +RC+ R A GP+ H D P H GP+ QPW
Sbjct: 719 GLAWCCYRLPGAHLQRCSWGCRRDPACSGPKDGPHRDHPLGGVHPMELGPTATGQPW 775
>gi|24041040 ADAM metallopeptidase domain 33 isoform beta
preproprotein [Homo sapiens]
Length = 787
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 11 GLARVCPQRPGAG-RRCTVSPRE--ADLGPEKDTHLDLP----HRPGPGPSGAEQPW 60
GLA C + PGA +RC+ R A GP+ H D P H GP+ QPW
Sbjct: 693 GLAWCCYRLPGAHLQRCSWGCRRDPACSGPKDGPHRDHPLGGVHPMELGPTATGQPW 749
>gi|45505137 podocan [Homo sapiens]
Length = 661
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 20 PGAGRRC--TVSPREADLGPEKDTHLDLPHRPGPGPSGAEQP 59
PG GR ++SP E + E+ + P PGPGP+ P
Sbjct: 76 PGFGRSGGHSLSPEENEFAEEEPVLVLSPEEPGPGPAAVSCP 117
>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
Length = 1586
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 15 VCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSG 55
+C PGA C+ P P D+ +++P GPG G
Sbjct: 653 LCQSSPGAQSSCSSEPSPLGSAPNNDSGVEMP-GTGPGSLG 692
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 16/59 (27%)
Query: 17 PQRPGAGRRCTVSPREADLGPEKDTHLDLPHRP----------------GPGPSGAEQP 59
P R G+ C P EA L P + L H P GPG +G P
Sbjct: 165 PPRAGSAGSCETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMP 223
>gi|32189398 gastric intrinsic factor (vitamin B synthesis)
precursor [Homo sapiens]
Length = 417
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 3 EAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGA 56
+ K + +A++ P G + + + P+ + LP PGPGP+ A
Sbjct: 259 QGKFHNPMSIAQILPSLKG---KTYLDVPQVTCSPDHEVQPTLPSNPGPGPTSA 309
>gi|58533170 hepatocyte growth factor isoform 3 precursor [Homo
sapiens]
Length = 723
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 16 CPQRPGAGRRCTVS---------------PREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
C Q G G R TV+ P E D+ PE DL P G+E PW
Sbjct: 300 CIQGQGEGYRGTVNTIWNGIPCQRWDSQYPHEHDMTPENFKCKDLRENYCRNPDGSESPW 359
>gi|33859835 hepatocyte growth factor isoform 1 preproprotein [Homo
sapiens]
Length = 728
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 15/60 (25%)
Query: 16 CPQRPGAGRRCTVS---------------PREADLGPEKDTHLDLPHRPGPGPSGAEQPW 60
C Q G G R TV+ P E D+ PE DL P G+E PW
Sbjct: 305 CIQGQGEGYRGTVNTIWNGIPCQRWDSQYPHEHDMTPENFKCKDLRENYCRNPDGSESPW 364
>gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo
sapiens]
Length = 1048
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 3 EAKGRRDLGLARVC------PQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPG-PSG 55
EAK R + G R C P+RP + V GPE + P+ GP P G
Sbjct: 204 EAKTRGE-GDGRGCEKAERRPERPEVKKEPPVKANGLPAGPEPASEPGSPYPEGPRVPGG 262
Query: 56 AEQP 59
EQP
Sbjct: 263 GEQP 266
>gi|239747867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 4 AKGRRDLGLARVCPQRP-GAGRRCTVSPREADLGPEKDTHLDLPHR-PGPGPSGAEQP 59
A G + + A+ QR G + T+SP E L P + LP PGP PSG + P
Sbjct: 87 ASGMQHIPSAQASKQRSRGGAQPSTLSPAEELLRPGAGA-VGLPSPDPGPAPSGKKLP 143
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 13 ARVCPQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQP 59
++V PQ PG G R P L P +H D+ RPG QP
Sbjct: 2336 SQVEPQSPGLGLRPQEPPPAQALAPSPPSHPDI-FRPGSYTDPYAQP 2381
>gi|37693995 Kruppel-like factor 13 [Homo sapiens]
Length = 288
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Query: 17 PQRPGAGRRCTVSPREADLGPEKDTHLDLPHRPGPGPSG 55
P PGA P A PE + L+ PGP SG
Sbjct: 105 PTSPGAEGAAAAPPSPAWSEPEPEAGLEPEREPGPAGSG 143
>gi|239747259 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 20 PGAGRRCTVSPREADLGPEKDTHLDLP--HRPGPGPSG 55
PG+ RC P L LDLP H PGPGP G
Sbjct: 124 PGSPHRCP--PPGLFLLAPGPPSLDLPPTHSPGPGPRG 159
>gi|32698704 tectonin beta-propeller repeat containing 1 [Homo
sapiens]
Length = 1165
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 21 GAGRRCTVSPREADLGPEKDTHLDLPH-RPGPGPSGAEQPW 60
GAGR T D P + + P+ PGP P+ AE PW
Sbjct: 449 GAGR--TAEDTVEDACPAEGSREARPNTHPGPAPTPAELPW 487
>gi|239752459 PREDICTED: hypothetical protein XP_002348282 [Homo
sapiens]
Length = 344
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 28 VSPREADLGPEKDTHLDLPHRPGPGPS 54
V+ EA++ P+++ DL +PGPGPS
Sbjct: 56 VAKEEANVEPQQE---DLQAQPGPGPS 79
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 26.2 bits (56), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 38 EKDTHLDLPHRPGPGPSGAEQPW 60
+ DT + RP PGP+ + +PW
Sbjct: 187 DSDTRVAEGARPRPGPTSSRRPW 209
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 26.2 bits (56), Expect = 6.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 38 EKDTHLDLPHRPGPGPSGAEQPW 60
+ DT + RP PGP+ + +PW
Sbjct: 187 DSDTRVAEGARPRPGPTSSRRPW 209
>gi|66932999 testis-specific protein kinase 1 [Homo sapiens]
Length = 626
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 19 RPGA-GRRCTVSPREADLGPEKDTHLDLPHRPGPGPSGAEQ 58
+PG RRC P +L +T L P P GPS E+
Sbjct: 427 QPGTPARRCRSLPSSPELPRRMETALPGPGPPAVGPSAEEK 467
>gi|149944560 forkhead box D4-like 2 [Homo sapiens]
Length = 416
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCT 27
+ + G R GL RVCP+ GA C+
Sbjct: 330 LCKGSGERVQGLRRVCPRPRGATATCS 356
>gi|187423902 forkhead box D4-like 5 [Homo sapiens]
Length = 416
Score = 26.2 bits (56), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 1 MAEAKGRRDLGLARVCPQRPGAGRRCT 27
+ + G R GL RVCP+ GA C+
Sbjct: 330 LCKGSGERVQGLRRVCPRPRGATATCS 356
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.139 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,708,904
Number of Sequences: 37866
Number of extensions: 189879
Number of successful extensions: 521
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 40
length of query: 60
length of database: 18,247,518
effective HSP length: 33
effective length of query: 27
effective length of database: 16,997,940
effective search space: 458944380
effective search space used: 458944380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.