Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 116063536
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116063536 coenzyme Q5 homolog, methyltransferase [Homo
sapiens]
(327 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116063536 coenzyme Q5 homolog, methyltransferase [Homo sapiens] 667 0.0
gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens] 41 0.002
gi|12758125 ribosomal RNA processing 8, methyltransferase, homol... 36 0.053
gi|42542403 CGI-01 protein isoform 1 [Homo sapiens] 33 0.26
gi|223005862 echinoderm microtubule associated protein like 6 [H... 32 0.59
gi|153945707 endothelin converting enzyme 2 isoform C [Homo sapi... 32 0.59
gi|42542405 CGI-01 protein isoform 2 [Homo sapiens] 32 0.77
gi|238908505 DNA-directed RNA polymerase III B isoform 2 [Homo s... 31 1.3
gi|238908503 DNA-directed RNA polymerase III B isoform 1 [Homo s... 31 1.3
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 30 2.9
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 30 2.9
gi|44955929 calmodulin regulated spectrin-associated protein 1-l... 30 3.8
gi|210032790 hypothetical protein LOC27146 [Homo sapiens] 29 6.5
gi|193794843 BEN domain containing 2 [Homo sapiens] 29 6.5
gi|169203189 PREDICTED: hypothetical protein LOC338667 [Homo sap... 28 8.5
gi|169203683 PREDICTED: hypothetical protein LOC338667 [Homo sap... 28 8.5
gi|169202109 PREDICTED: hypothetical protein LOC338667 [Homo sap... 28 8.5
>gi|116063536 coenzyme Q5 homolog, methyltransferase [Homo sapiens]
Length = 327
Score = 667 bits (1720), Expect = 0.0
Identities = 327/327 (100%), Positives = 327/327 (100%)
Query: 1 MAAPGSCALWSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVS 60
MAAPGSCALWSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVS
Sbjct: 1 MAAPGSCALWSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVS 60
Query: 61 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDI 120
EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDI
Sbjct: 61 EEEKGGKVYQVFESVAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDI 120
Query: 121 AFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVG 180
AFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVG
Sbjct: 121 AFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKEMLKVG 180
Query: 181 KQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGG 240
KQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGG
Sbjct: 181 KQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGG 240
Query: 241 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKDM 300
RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKDM
Sbjct: 241 RFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGDWKSYQYLVESIRRFPSQEEFKDM 300
Query: 301 IEDAGFHKVTYESLTSGIVAIHSGFKL 327
IEDAGFHKVTYESLTSGIVAIHSGFKL
Sbjct: 301 IEDAGFHKVTYESLTSGIVAIHSGFKL 327
>gi|40018642 hypothetical protein LOC79133 isoform 1 [Homo sapiens]
Length = 345
Score = 40.8 bits (94), Expect = 0.002
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 196 VLGDAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFL 243
VL D E LPF ++ FD+ + + V + +AL++ H +LKP G F+
Sbjct: 138 VLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFI 185
>gi|12758125 ribosomal RNA processing 8, methyltransferase, homolog
[Homo sapiens]
Length = 456
Score = 35.8 bits (81), Expect = 0.053
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 199 DAEELPFDDDKFDIYTIAFGIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLISRL 258
D ++P +D+ D+ + T+I L+EA+RVLKPGG E S SR
Sbjct: 346 DMAQVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVS-------SRF 397
Query: 259 YDLYSF 264
D+ +F
Sbjct: 398 EDVRTF 403
>gi|42542403 CGI-01 protein isoform 1 [Homo sapiens]
Length = 699
Score = 33.5 bits (75), Expect = 0.26
Identities = 23/99 (23%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 162 LGGSRVVVCDINKEMLKVGKQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGI-- 219
+G +V DI++ ++K K+ + R ++++ D ++ F D F + +
Sbjct: 69 VGYRDIVNIDISEVVIKQMKECNATR--RPQMSFLKMDMTQMEFPDASFQVVLDKGTLDA 126
Query: 220 -------RNVTHIDQALQEAHRVLKPGGRFLCLEFSQVN 251
+ + +D+ L E RVL+ GGR+LC+ +Q +
Sbjct: 127 VLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQAH 165
>gi|223005862 echinoderm microtubule associated protein like 6 [Homo
sapiens]
Length = 1958
Score = 32.3 bits (72), Expect = 0.59
Identities = 47/168 (27%), Positives = 63/168 (37%), Gaps = 29/168 (17%)
Query: 161 SLGGSRVVVCDINKEMLKV---GKQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAF 217
+LG ++V N E+L++ G L QG+ G W L LP D T+
Sbjct: 965 TLGHGHILVGTKNGEILEIDKSGPMTLLVQGHMEGEVWGLAAHPLLPICATVSDDKTLRI 1024
Query: 218 GIRNVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLISRLYDLYSFQVIPVLGEVIAGD 277
+ H A+ R LK GGR C FS L L D SF V+
Sbjct: 1025 WELSAQHRMLAV----RKLKKGGR--CCAFSPDGKALAVGLND-GSFLVVN--------- 1068
Query: 278 WKSYQYLVESIRRFPSQEEFKDMIEDAGFHKVTYESLTSGIVAIHSGF 325
+++ S K+MI D F K T + L VA H F
Sbjct: 1069 -------ADTVEDMVSFHHRKEMISDIKFSKDTGKYLA---VASHDNF 1106
>gi|153945707 endothelin converting enzyme 2 isoform C [Homo
sapiens]
Length = 255
Score = 32.3 bits (72), Expect = 0.59
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 193 LAWVLGDAEELPFDDDKFDIY-------TIAFGIRN--------VTHIDQALQEAHRVLK 237
L W D +L F FD+ + G R+ V +DQ L E RVL
Sbjct: 107 LRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLV 166
Query: 238 PGGRFLCL 245
PGGRF+ +
Sbjct: 167 PGGRFISM 174
>gi|42542405 CGI-01 protein isoform 2 [Homo sapiens]
Length = 613
Score = 32.0 bits (71), Expect = 0.77
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 220 RNVTHIDQALQEAHRVLKPGGRFLCLEFSQVN 251
+ + +D+ L E RVL+ GGR+LC+ +Q +
Sbjct: 48 KTLQQVDRMLAEVGRVLQVGGRYLCISLAQAH 79
>gi|238908505 DNA-directed RNA polymerase III B isoform 2 [Homo
sapiens]
Length = 1075
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 137 KRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKE 175
K+Q A N EE+A+ Y+N ED L S V D+N+E
Sbjct: 542 KKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEE 580
>gi|238908503 DNA-directed RNA polymerase III B isoform 1 [Homo
sapiens]
Length = 1133
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 137 KRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVCDINKE 175
K+Q A N EE+A+ Y+N ED L S V D+N+E
Sbjct: 600 KKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEE 638
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 30.0 bits (66), Expect = 2.9
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 23 GCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVSEEEKG--------GKVYQVFES 74
GCQ L S + LL ++L Q K E +++ E E G ++ F++
Sbjct: 3661 GCQATQLTSRYQALLL--QVLEQIKFLEEE---IQSLEESESSLSSYSDWYGSTHKNFKN 3715
Query: 75 VAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDIAFRFLNYVQSQHQR 134
VA K D ++ +M +G ++LL M G LL A G+ A ++L +++ R
Sbjct: 3716 VATKIDKVDTVM-MGKKLKTLEVLLKDMEK--GHSLLKSAREKGERAVKYLEEGEAERLR 3772
Query: 135 KQKRQLRAQQNLSWEEIAKEYQNEEDSL 162
K+ Q + KE+ E L
Sbjct: 3773 KEIHDHMEQLKELTSTVRKEHMTLEKGL 3800
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 30.0 bits (66), Expect = 2.9
Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 23 GCQLLGLRSSWPGDLLSARLLSQEKRAAETHFGFETVSEEEKG--------GKVYQVFES 74
GCQ L S + LL ++L Q K E +++ E E G ++ F++
Sbjct: 3676 GCQATQLTSRYQALLL--QVLEQIKFLEEE---IQSLEESESSLSSYSDWYGSTHKNFKN 3730
Query: 75 VAKKYDVMNDMMSLGIHRVWKDLLLWKMHPLPGTQLLDVAGGTGDIAFRFLNYVQSQHQR 134
VA K D ++ +M +G ++LL M G LL A G+ A ++L +++ R
Sbjct: 3731 VATKIDKVDTVM-MGKKLKTLEVLLKDMEK--GHSLLKSAREKGERAVKYLEEGEAERLR 3787
Query: 135 KQKRQLRAQQNLSWEEIAKEYQNEEDSL 162
K+ Q + KE+ E L
Sbjct: 3788 KEIHDHMEQLKELTSTVRKEHMTLEKGL 3815
>gi|44955929 calmodulin regulated spectrin-associated protein 1-like
1 [Homo sapiens]
Length = 1478
Score = 29.6 bits (65), Expect = 3.8
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 175 EMLKVGKQKALAQGYRAGLAWVLGDAEELPFDDDKFDIYTIAF---GIRNVTHIDQALQE 231
EM+ + K A AQ Y A A +LP+D + +Y I ++++ +Q L+E
Sbjct: 150 EMVSIEKVIACAQQYSAFF-----QATDLPYDIEDAVMYWINKVNEHLKDIMEQEQKLKE 204
Query: 232 AHRVLKPGGR 241
H V PGG+
Sbjct: 205 HHTVEAPGGQ 214
>gi|210032790 hypothetical protein LOC27146 [Homo sapiens]
Length = 1060
Score = 28.9 bits (63), Expect = 6.5
Identities = 16/77 (20%), Positives = 39/77 (50%)
Query: 111 LDVAGGTGDIAFRFLNYVQSQHQRKQKRQLRAQQNLSWEEIAKEYQNEEDSLGGSRVVVC 170
L + T + + L Q ++++ +++AQQ L E + +E ++ + G + +
Sbjct: 693 LQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAACSGHQKDLE 752
Query: 171 DINKEMLKVGKQKALAQ 187
+ E+ +G+Q+A +Q
Sbjct: 753 ALQAELRALGRQQASSQ 769
>gi|193794843 BEN domain containing 2 [Homo sapiens]
Length = 799
Score = 28.9 bits (63), Expect = 6.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 10 WSYCGRGWSRAMRGCQLLGLRSSWPGDLLSARLLSQE 46
WSY GR W C +L L + LSAR L Q+
Sbjct: 660 WSYFGRPWRNIRMPCSVLTLAKTKSCASLSARYLIQK 696
>gi|169203189 PREDICTED: hypothetical protein LOC338667 [Homo
sapiens]
Length = 859
Score = 28.5 bits (62), Expect = 8.5
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 1 MAAPGSCA--LWSYCGRG--WSRAMRGCQLLGLRSSWPG 35
+A P C LW GR WS A G Q + L WPG
Sbjct: 456 LAPPALCTVMLWEPLGRPTCWSTATMGDQFIMLSCEWPG 494
>gi|169203683 PREDICTED: hypothetical protein LOC338667 [Homo
sapiens]
Length = 859
Score = 28.5 bits (62), Expect = 8.5
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 1 MAAPGSCA--LWSYCGRG--WSRAMRGCQLLGLRSSWPG 35
+A P C LW GR WS A G Q + L WPG
Sbjct: 456 LAPPALCTVMLWEPLGRPTCWSTATMGDQFIMLSCEWPG 494
>gi|169202109 PREDICTED: hypothetical protein LOC338667 [Homo
sapiens]
Length = 859
Score = 28.5 bits (62), Expect = 8.5
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 1 MAAPGSCA--LWSYCGRG--WSRAMRGCQLLGLRSSWPG 35
+A P C LW GR WS A G Q + L WPG
Sbjct: 456 LAPPALCTVMLWEPLGRPTCWSTATMGDQFIMLSCEWPG 494
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,883,927
Number of Sequences: 37866
Number of extensions: 540178
Number of successful extensions: 1474
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1465
Number of HSP's gapped (non-prelim): 17
length of query: 327
length of database: 18,247,518
effective HSP length: 103
effective length of query: 224
effective length of database: 14,347,320
effective search space: 3213799680
effective search space used: 3213799680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.