Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 23503329
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23503329 defensin, beta 119 isoform c precursor [Homo
sapiens]
(88 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 188 9e-49
gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens] 59 1e-09
gi|58865339 defensin, beta 121 [Homo sapiens] 52 1e-07
gi|16905373 beta-defensin 118 [Homo sapiens] 49 8e-07
gi|23503331 defensin, beta 123 precursor [Homo sapiens] 42 8e-05
gi|37704384 defensin, beta 119 isoform b [Homo sapiens] 40 3e-04
gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens] 39 9e-04
gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens] 39 9e-04
gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens] 39 9e-04
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 39 0.001
gi|21040279 defensin, beta 127 preproprotein [Homo sapiens] 37 0.003
gi|46409558 beta-defensin 32 precursor [Homo sapiens] 32 0.14
gi|116517226 beta-defensin 135 [Homo sapiens] 31 0.18
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 30 0.41
gi|83582802 beta-defensin 128 [Homo sapiens] 30 0.41
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 30 0.53
gi|50344744 beta-defensin 108B [Homo sapiens] 30 0.53
gi|74136827 beta-defensin 134 [Homo sapiens] 30 0.53
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 29 0.91
gi|83582798 beta-defensin 115 [Homo sapiens] 29 0.91
gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo ... 28 1.2
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 28 1.5
gi|103485139 defensin, beta 104A precursor [Homo sapiens] 27 2.6
gi|83582800 beta-defensin 116 [Homo sapiens] 27 2.6
gi|103485137 defensin, beta 104B precursor [Homo sapiens] 27 2.6
gi|18250304 beta defensin 129 precursor [Homo sapiens] 27 3.5
gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo sapi... 27 4.5
gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo sapi... 26 7.7
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 188 bits (477), Expect = 9e-49
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MKLLYLFLAILLAIEEPVISVECWMDGHCRLLCKDGEDSIIRCRNRKRCCVPSRYLTIQP 60
MKLLYLFLAILLAIEEPVISVECWMDGHCRLLCKDGEDSIIRCRNRKRCCVPSRYLTIQP
Sbjct: 1 MKLLYLFLAILLAIEEPVISVECWMDGHCRLLCKDGEDSIIRCRNRKRCCVPSRYLTIQP 60
Query: 61 VTIHGILGWTTPQMSTTAPKMKTNITNR 88
VTIHGILGWTTPQMSTTAPKMKTNITNR
Sbjct: 61 VTIHGILGWTTPQMSTTAPKMKTNITNR 88
>gi|37704382 defensin, beta 119 isoform a precursor [Homo sapiens]
Length = 84
Score = 58.5 bits (140), Expect = 1e-09
Identities = 33/59 (55%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 1 MKLLYLFLAILLAIEEPVIS-----VECW-MDGHCRLLCKDGEDSIIRCRNRKRCCVPS 53
MKLLYLFLAILLAIEEPVIS + C G CR CK E + CRN + CC+ S
Sbjct: 1 MKLLYLFLAILLAIEEPVISGKRHILRCMGNSGICRASCKKNEQPYLYCRNCQSCCLQS 59
>gi|58865339 defensin, beta 121 [Homo sapiens]
Length = 76
Score = 51.6 bits (122), Expect = 1e-07
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MKLLYLFLAILLAIEEPVISVECW-MDGHCRLLCKDGEDSIIRCRNRKRCCVPSRYLTIQ 59
MKLL L L + L + + ++CW G CR CK+ E I C+ +CCV +Y+ ++
Sbjct: 1 MKLLLLLLTVTLLLAQVTPVMKCWGKSGRCRTTCKESEVYYILCKTEAKCCVDPKYVPVK 60
Query: 60 P 60
P
Sbjct: 61 P 61
>gi|16905373 beta-defensin 118 [Homo sapiens]
Length = 123
Score = 48.9 bits (115), Expect = 8e-07
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 1 MKLLYLFLAILLAIEE--PVISVE--CW-MDGHCRLLCKDGEDSIIRCRNRKRCCVPS 53
MKLL L L +L+ + + P S E CW GHCR CKDGE C+N + CC+PS
Sbjct: 1 MKLLLLALPMLVLLPQVIPAYSGEKKCWNRSGHCRKQCKDGEAVKDTCKNLRACCIPS 58
>gi|23503331 defensin, beta 123 precursor [Homo sapiens]
Length = 67
Score = 42.4 bits (98), Expect = 8e-05
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 1 MKLLYLFLAILLAIEE--PVISVECW-MDGHCRLLCKDGEDSIIRCRNRKRCCVPSRY 55
MKLL L L +LL + + P + CW + G CR C E + C N K CCV +Y
Sbjct: 1 MKLLLLTLTVLLLLSQLTPGGTQRCWNLYGKCRYRCSKKERVYVYCINNKMCCVKPKY 58
>gi|37704384 defensin, beta 119 isoform b [Homo sapiens]
Length = 43
Score = 40.4 bits (93), Expect = 3e-04
Identities = 23/31 (74%), Positives = 24/31 (77%), Gaps = 5/31 (16%)
Query: 1 MKLLYLFLAILLAIEEPVIS-----VECWMD 26
MKLLYLFLAILLAIEEPVIS V C +D
Sbjct: 1 MKLLYLFLAILLAIEEPVISALVRTVGCCLD 31
>gi|239757478 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 38.9 bits (89), Expect = 9e-04
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 23 CWM-DGHCRLLCKDGEDSIIRCRNRKRCCVPS 53
CW+ GHCR CK GE C+N CC+PS
Sbjct: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPS 49
>gi|239751980 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 38.9 bits (89), Expect = 9e-04
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 23 CWM-DGHCRLLCKDGEDSIIRCRNRKRCCVPS 53
CW+ GHCR CK GE C+N CC+PS
Sbjct: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPS 49
>gi|239746467 PREDICTED: defensin, beta 117 [Homo sapiens]
Length = 53
Score = 38.9 bits (89), Expect = 9e-04
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 23 CWM-DGHCRLLCKDGEDSIIRCRNRKRCCVPS 53
CW+ GHCR CK GE C+N CC+PS
Sbjct: 18 CWIIKGHCRKNCKPGEQVKKPCKNGDYCCIPS 49
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 38.5 bits (88), Expect = 0.001
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 22 ECWMD--GHCRLLCKDGEDSIIRCRNRKRCCV 51
+CW + GHCR C D E I+ CRN+ CC+
Sbjct: 26 KCWKNNVGHCRRRCLDTERYILLCRNKLSCCI 57
>gi|21040279 defensin, beta 127 preproprotein [Homo sapiens]
Length = 99
Score = 37.4 bits (85), Expect = 0.003
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 4 LYLFLAILLAIEEPVISVE---CW---MDGHCRLLCKDGEDSIIRCRNRKRCCV 51
L++ +AILL ++P ++ + CW + GHCR +C+ E C N + CC+
Sbjct: 3 LFMIIAILL-FQKPTVTEQLKKCWNNYVQGHCRKICRVNEVPEALCENGRYCCL 55
>gi|46409558 beta-defensin 32 precursor [Homo sapiens]
Length = 95
Score = 31.6 bits (70), Expect = 0.14
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 27 GHCRLLCKDGEDSIIRCRNRKRCCVPSRYL 56
G+CR C GE ++ C ++CC+ +L
Sbjct: 33 GYCRTCCHWGETALFMCNASRKCCISYSFL 62
>gi|116517226 beta-defensin 135 [Homo sapiens]
Length = 77
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 19 ISVECW-MDGHCRLLCKDGEDSIIRCRNRKRCCVPSRYLTI 58
I CW + G CR C E I C CCV +YL I
Sbjct: 33 IFASCWRLQGTCRPKCLKNEQYRILCDTIHLCCVNPKYLPI 73
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 30.0 bits (66), Expect = 0.41
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 26 DGHCRLLCKDGEDSIIRCRNRKRCCVP 52
+G CR C + E + RC N + CC+P
Sbjct: 42 NGSCRDFCLETEIHVGRCLNSRPCCLP 68
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 30.0 bits (66), Expect = 0.41
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 26 DGHCRLLCKDGEDSIIRCRNRKRCCVP 52
+G CR C + E + RC N + CC+P
Sbjct: 42 NGSCRDFCLETEIHVGRCLNSRPCCLP 68
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 30.0 bits (66), Expect = 0.41
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 26 DGHCRLLCKDGEDSIIRCRNRKRCCVP 52
+G CR C + E + RC N + CC+P
Sbjct: 32 NGSCRDFCLETEIHVGRCLNSRPCCLP 58
>gi|83582802 beta-defensin 128 [Homo sapiens]
Length = 93
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 4 LYLFLAILL--AIEEPVISVECW--MDGHCRLLCKDGEDSIIRCRNRKRCC 50
L+L L ILL + + +C+ + G+CR CK GE I C + K CC
Sbjct: 3 LFLVLIILLFEVLTDGARLKKCFNKVTGYCRKKCKVGERYEIGCLSGKLCC 53
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 3 LLYLFLAILLAIEEPVIS---VECW-MDGHCRL-LCKDGEDSIIRCRNRKRCC 50
L+ L +ILL+ + V C + G CR +CK ED I CR R +CC
Sbjct: 71 LILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 26 DGHCRLLCKDGEDSIIRCRNRKRCCVP 52
+G CR C + E + RC N + CC+P
Sbjct: 32 NGSCRDFCLETEIHVGRCLNSQPCCLP 58
>gi|74136827 beta-defensin 134 [Homo sapiens]
Length = 66
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 22 ECWMDGHCRLLCKDGEDSIIRCRNRKRCCV 51
+C+ +G CRL C + E + C + CCV
Sbjct: 31 KCYKNGICRLECYESEMLVAYCMFQLECCV 60
>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
Length = 87
Score = 28.9 bits (63), Expect = 0.91
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 1 MKLLYLFLAILLAIEEPVISVECWMDGHCRLL--------CKDGEDSIIRCRNRKRCC 50
+ LL L L + + PV +GHC L C ED I CR R +CC
Sbjct: 3 LHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
>gi|83582798 beta-defensin 115 [Homo sapiens]
Length = 88
Score = 28.9 bits (63), Expect = 0.91
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 1 MKLLYLFLAILLAIEEPVISVECWM------DGHCRLLCKDGEDSIIRCRNRKRCCVP 52
+KL L L +L+ + + + + W+ G CR CK+ E +C + CCVP
Sbjct: 13 IKLSVLALVVLVVLAQT--APDGWIRRCYYGTGRCRKSCKEIERKKEKCGEKHICCVP 68
>gi|239749357 PREDICTED: hypothetical protein XP_002347009 [Homo
sapiens]
Length = 111
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 26 DGHCRLLCKDGEDSIIRCRNRKRCCVP 52
+G C+ C + E + RC N + CC+P
Sbjct: 70 NGSCQDFCLETEIHVGRCLNSRPCCLP 96
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 28.1 bits (61), Expect = 1.5
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 8/33 (24%)
Query: 26 DGHC--------RLLCKDGEDSIIRCRNRKRCC 50
+GHC R +CK ED I CR + +CC
Sbjct: 28 EGHCLNLSGVCRRDVCKVVEDQIGACRRKMKCC 60
>gi|103485139 defensin, beta 104A precursor [Homo sapiens]
Length = 72
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 1 MKLLYLFLAI-LLAIEEPVISVECWMD-------GHCRLLCKDGEDSIIRCRNRKRCCV 51
M+ L L LAI LL ++ + E +D CR C+ E I RC N CC+
Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
>gi|83582800 beta-defensin 116 [Homo sapiens]
Length = 102
Score = 27.3 bits (59), Expect = 2.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 27 GHCRLLCKDGEDSIIRCRNRKRCCV 51
G CR C++ E + C N ++CC+
Sbjct: 45 GMCRNACREYEIQYLTCPNDQKCCL 69
>gi|103485137 defensin, beta 104B precursor [Homo sapiens]
Length = 72
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 1 MKLLYLFLAI-LLAIEEPVISVECWMD-------GHCRLLCKDGEDSIIRCRNRKRCCV 51
M+ L L LAI LL ++ + E +D CR C+ E I RC N CC+
Sbjct: 1 MQRLVLLLAISLLLYQDLPVRSEFELDRICGYGTARCRKKCRSQEYRIGRCPNTYACCL 59
>gi|18250304 beta defensin 129 precursor [Homo sapiens]
Length = 183
Score = 26.9 bits (58), Expect = 3.5
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 1 MKLLY-LFLAILLAIE---EPVISVECWMD-GHCRLLCKDGEDSIIRCRNRKRCCVPSRY 55
MKLL+ +F +++L + E + C M G CR C E I +C+ +K CCV +
Sbjct: 1 MKLLFPIFASLMLQYQVNTEFIGLRRCLMGLGRCRDHCNVDEKEIQKCKMKK-CCVGPKV 59
Query: 56 LTIQPVTIHGILGWTTPQM 74
+ + I L + TP +
Sbjct: 60 VKL----IKNYLQYGTPNV 74
>gi|169172906 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 28 HCRLLCKDGEDSIIRCRNRKRCC 50
HCRL C E +I C + CC
Sbjct: 35 HCRLKCNADEHAITYCADFSICC 57
>gi|169202989 PREDICTED: similar to defensin, beta 131 [Homo
sapiens]
Length = 70
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 28 HCRLLCKDGEDSIIRCRNRKRCC 50
HCRL C E +I C + CC
Sbjct: 35 HCRLKCNADEHAIRYCADFSICC 57
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.140 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,560,322
Number of Sequences: 37866
Number of extensions: 146682
Number of successful extensions: 403
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 35
length of query: 88
length of database: 18,247,518
effective HSP length: 60
effective length of query: 28
effective length of database: 15,975,558
effective search space: 447315624
effective search space used: 447315624
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.