Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 23463326
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23463326 POU domain class 5, transcription factor 2 [Homo
sapiens]
(328 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23463326 POU domain class 5, transcription factor 2 [Homo sap... 687 0.0
gi|42560248 POU domain, class 5, transcription factor 1 isoform ... 274 9e-74
gi|227430410 POU class 5 homeobox 1B [Homo sapiens] 256 2e-68
gi|116235491 POU domain, class 5, transcription factor 1 isoform... 204 7e-53
gi|110624763 POU domain, class 3, transcription factor 4 [Homo s... 144 1e-34
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 142 3e-34
gi|51702521 POU domain, class 3, transcription factor 2 [Homo sa... 141 7e-34
gi|110624765 POU domain, class 3, transcription factor 1 [Homo s... 139 3e-33
gi|148664218 POU transcription factor [Homo sapiens] 122 6e-28
gi|42476164 POU class 2 homeobox 1 [Homo sapiens] 121 7e-28
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap... 121 1e-27
gi|170650730 pituitary specific transcription factor 1 isoform b... 105 7e-23
gi|4505955 pituitary specific transcription factor 1 isoform alp... 105 7e-23
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 100 3e-21
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 99 4e-21
gi|4505965 POU class 4 homeobox 3 [Homo sapiens] 99 5e-21
gi|223890225 POU class 6 homeobox 1 [Homo sapiens] 99 7e-21
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 70 2e-12
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 36 0.041
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 35 0.12
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom... 34 0.16
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 33 0.27
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap... 33 0.27
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens] 33 0.35
gi|157426823 NK2 homeobox 4 [Homo sapiens] 33 0.45
gi|4758168 distal-less homeobox 2 [Homo sapiens] 32 0.59
gi|170784824 paired box 4 [Homo sapiens] 32 0.59
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 32 0.59
gi|4504465 homeobox B2 [Homo sapiens] 32 0.59
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens] 32 0.77
>gi|23463326 POU domain class 5, transcription factor 2 [Homo
sapiens]
Length = 328
Score = 687 bits (1773), Expect = 0.0
Identities = 328/328 (100%), Positives = 328/328 (100%)
Query: 1 MAGHRPSNHFCPLPGSGGGGPRGPMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPDV 60
MAGHRPSNHFCPLPGSGGGGPRGPMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPDV
Sbjct: 1 MAGHRPSNHFCPLPGSGGGGPRGPMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPDV 60
Query: 61 WRIPLGPLPHEFRGWIAPCRPRLGASEAGDWLRRPSEGALPGPYIALRSIPKLPPPEDIS 120
WRIPLGPLPHEFRGWIAPCRPRLGASEAGDWLRRPSEGALPGPYIALRSIPKLPPPEDIS
Sbjct: 61 WRIPLGPLPHEFRGWIAPCRPRLGASEAGDWLRRPSEGALPGPYIALRSIPKLPPPEDIS 120
Query: 121 GILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKL 180
GILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKL
Sbjct: 121 GILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKL 180
Query: 181 RPLLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQI 240
RPLLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQI
Sbjct: 181 RPLLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQI 240
Query: 241 SHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVGTAGPPCPGAPVCFHLGLGLPV 300
SHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVGTAGPPCPGAPVCFHLGLGLPV
Sbjct: 241 SHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVGTAGPPCPGAPVCFHLGLGLPV 300
Query: 301 DIPHYTRLYSAGVAHSSAPATTLGLLRF 328
DIPHYTRLYSAGVAHSSAPATTLGLLRF
Sbjct: 301 DIPHYTRLYSAGVAHSSAPATTLGLLRF 328
>gi|42560248 POU domain, class 5, transcription factor 1 isoform 1
[Homo sapiens]
Length = 360
Score = 274 bits (700), Expect = 9e-74
Identities = 169/359 (47%), Positives = 207/359 (57%), Gaps = 40/359 (11%)
Query: 1 MAGHRPSNH-FCPLPGSGGGGPRGPMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPD 59
MAGH S+ F P PG GG GP GP P VD TWLS Q PG P + PG+ PG +
Sbjct: 1 MAGHLASDFAFSPPPGGGGDGPGGPEPGWVDPRTWLSFQGPPGG----PGIGPGVGPGSE 56
Query: 60 VWRIPLGPLPHEFRGWIAPCRPRLGAS--------------EAGDWLRRPSEGALPGPYI 105
VW IP P P+EF G +A C P++G EAG + S+GA P P
Sbjct: 57 VWGIPPCPPPYEFCGGMAYCGPQVGVGLVPQGGLETSQPEGEAGVGVESNSDGASPEPCT 116
Query: 106 ALRSIPKLPPP---------EDISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFG 156
KL +DI + KEL+Q AK L+QKR++LGY+QADVG+ +G LFG
Sbjct: 117 VTPGAVKLEKEKLEQNPEESQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFG 176
Query: 157 KVLSQTTICRFEAQQLSVANMWKLRPLLKKWLKEVEA-ENLLGLCKMEMILQQSGKWRRA 215
KV SQTTICRFEA QLS NM KLRPLL+KW++E + ENL +CK E ++Q + K +R
Sbjct: 177 KVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQ-ARKRKRT 235
Query: 216 SRERRIGNSLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPR 275
S E R+ +LE F +CPKPT QQISHIA L L+KDVVRVWF NR + G R ++D + R
Sbjct: 236 SIENRVRGNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQR 295
Query: 276 EIVGTAGPPCPGAPVCFHLG----LGLP-VDIPHYTRLYSA-----GVAHSSAPATTLG 324
E AG P G PV F L G P PH+T LYS+ G A TTLG
Sbjct: 296 EDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLG 354
>gi|227430410 POU class 5 homeobox 1B [Homo sapiens]
Length = 359
Score = 256 bits (654), Expect = 2e-68
Identities = 161/342 (47%), Positives = 196/342 (57%), Gaps = 38/342 (11%)
Query: 1 MAGHRPSNH-FCPLPGSGGGGPRGPMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPD 59
MAGH S+ F P PG GG GP G P VD LTWLS Q PG P + PG+ PG +
Sbjct: 1 MAGHLASDFAFSPPPGGGGDGPWGAEPGWVDPLTWLSFQGPPGG----PGIGPGVGPGSE 56
Query: 60 VWRIPLGPLPHEFRGWIAPCRPRLGA--------------SEAGDWLRRPSEGALPGPYI 105
VW IP P P+E G +A C P++G SEAG + S GA P P
Sbjct: 57 VWGIPPCPPPYELCGGMAYCGPQVGVGLVPQGGLETSQPESEAGVGVESNSNGASPEPCT 116
Query: 106 ALRSIPKLPPP---------EDISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFG 156
KL +DI + KEL+Q AK L+QKR++LGY+QADVG+ +G LFG
Sbjct: 117 VPPGAVKLEKEKLEQNPEKSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLILGVLFG 176
Query: 157 KVLSQTTICRFEAQQLSVANMWKLRPLLKKWLKEVE-AENLLGLCKMEMILQQSGKWRRA 215
KV SQ TICRFEA QLS NM KLRPLL+KW++E + ENL +CK E L Q+ K +R
Sbjct: 177 KVFSQKTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAE-TLMQARKRKRT 235
Query: 216 SRERRIGNSLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPR 275
S E R+ +LE F +CPKPT QISHIA L L+KDVVRVWF NR + G R ++D + R
Sbjct: 236 SIENRVRGNLENLFLQCPKPT-LQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQR 294
Query: 276 EIVGTAGPPCPGAPVCF------HLGLGLPVDIPHYTRLYSA 311
E AG P G PV F H G PH+T LYS+
Sbjct: 295 EDFEAAGSPFSGGPVSFPPAPGPHFGTP-GYGSPHFTALYSS 335
>gi|116235491 POU domain, class 5, transcription factor 1 isoform 2
[Homo sapiens]
Length = 265
Score = 204 bits (520), Expect = 7e-53
Identities = 118/232 (50%), Positives = 148/232 (63%), Gaps = 12/232 (5%)
Query: 104 YIALRSIPKLPPPEDISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTT 163
Y+ +P +DI + KEL+Q AK L+QKR++LGY+QADVG+ +G LFGKV SQTT
Sbjct: 29 YVLTSLLPFKIQSQDIKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTT 88
Query: 164 ICRFEAQQLSVANMWKLRPLLKKWLKEVEA-ENLLGLCKMEMILQQSGKWRRASRERRIG 222
ICRFEA QLS NM KLRPLL+KW++E + ENL +CK E ++Q + K +R S E R+
Sbjct: 89 ICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAETLVQ-ARKRKRTSIENRVR 147
Query: 223 NSLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVGTAG 282
+LE F +CPKPT QQISHIA L L+KDVVRVWF NR + G R ++D + RE AG
Sbjct: 148 GNLENLFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYAQREDFEAAG 207
Query: 283 PPCPGAPVCFHLG----LGLP-VDIPHYTRLYSA-----GVAHSSAPATTLG 324
P G PV F L G P PH+T LYS+ G A TTLG
Sbjct: 208 SPFSGGPVSFPLAPGPHFGTPGYGSPHFTALYSSVPFPEGEAFPPVSVTTLG 259
>gi|110624763 POU domain, class 3, transcription factor 4 [Homo
sapiens]
Length = 361
Score = 144 bits (362), Expect = 1e-34
Identities = 74/155 (47%), Positives = 100/155 (64%), Gaps = 2/155 (1%)
Query: 125 ELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRPLL 184
EL+Q AK+ +Q+R+ LG++QADVG+A+G L+G V SQTTICRFE QLS NM KL+PLL
Sbjct: 193 ELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEGLQLSFKNMCKLKPLL 252
Query: 185 KKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQISHIA 244
KWL+E ++ ++ Q + +R S E + LE F +CPKP Q+IS +A
Sbjct: 253 NKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGVLETHFLKCPKPAAQEISSLA 312
Query: 245 GCLQLQKDVVRVWFYNRSKMGSR--PTNDASPREI 277
LQL+K+VVRVWF NR + R P D P E+
Sbjct: 313 DSLQLEKEVVRVWFCNRRQKEKRMTPPGDQQPHEV 347
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 142 bits (359), Expect = 3e-34
Identities = 74/173 (42%), Positives = 107/173 (61%), Gaps = 4/173 (2%)
Query: 125 ELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRPLL 184
+L+Q AK+ +Q+R+ LG++QADVG+A+G L+G V SQTTICRFEA QLS NM KL+PLL
Sbjct: 321 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 380
Query: 185 KKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQISHIA 244
KWL+E ++ ++ Q + +R S E + +LE F +CPKP+ Q+I+++A
Sbjct: 381 NKWLEEADSSTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITNLA 440
Query: 245 GCLQLQKDVVRVWFYNRSKMGSRPT----NDASPREIVGTAGPPCPGAPVCFH 293
LQL+K+VVRVWF NR + R T +P ++ G P H
Sbjct: 441 DSLQLEKEVVRVWFCNRRQKEKRMTPPGIQQQTPDDVYSQVGTVSADTPPPHH 493
>gi|51702521 POU domain, class 3, transcription factor 2 [Homo
sapiens]
Length = 443
Score = 141 bits (356), Expect = 7e-34
Identities = 70/145 (48%), Positives = 100/145 (68%)
Query: 125 ELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRPLL 184
+L+Q AK+ +Q+R+ LG++QADVG+A+G L+G V SQTTICRFEA QLS NM KL+PLL
Sbjct: 269 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 328
Query: 185 KKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQISHIA 244
KWL+E ++ + ++ Q + +R S E + +LE F +CPKP+ Q+I+ +A
Sbjct: 329 NKWLEEADSSSGSPTSIDKIAAQGRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLA 388
Query: 245 GCLQLQKDVVRVWFYNRSKMGSRPT 269
LQL+K+VVRVWF NR + R T
Sbjct: 389 DSLQLEKEVVRVWFCNRRQKEKRMT 413
>gi|110624765 POU domain, class 3, transcription factor 1 [Homo
sapiens]
Length = 451
Score = 139 bits (350), Expect = 3e-33
Identities = 75/167 (44%), Positives = 106/167 (63%), Gaps = 4/167 (2%)
Query: 125 ELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRPLL 184
+L+Q AK+ +Q+R+ LG++QADVG+A+G L+G V SQTTICRFEA QLS NM KL+PLL
Sbjct: 254 DLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLL 313
Query: 185 KKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQISHIA 244
KWL+E ++ + ++ Q + +R S E + +LE F +CPKP+ +I+ +A
Sbjct: 314 NKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLA 373
Query: 245 GCLQLQKDVVRVWFYNRSKMGSRPTNDAS----PREIVGTAGPPCPG 287
LQL+K+VVRVWF NR + R T A P + V G PG
Sbjct: 374 DSLQLEKEVVRVWFCNRRQKEKRMTPAAGAGHPPMDDVYAPGELGPG 420
>gi|148664218 POU transcription factor [Homo sapiens]
Length = 436
Score = 122 bits (305), Expect = 6e-28
Identities = 86/228 (37%), Positives = 121/228 (53%), Gaps = 22/228 (9%)
Query: 56 PGPDVWRIPLGPLPHEFRGWIAPCRPRLGASEAGDWLRRPSEGALPGPYIA--LRSIPKL 113
PG + L P P + G + P + G A P LPG + L + L
Sbjct: 117 PGQQGLQPNLLPFPQQQSGLLLP---QTGPGLASQAFGHPG---LPGSSLEPHLEASQHL 170
Query: 114 PPPE--------DISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTIC 165
P P+ D L+EL++ AK +Q+R+ LG++Q DVG+A+G L+G SQTTI
Sbjct: 171 PVPKHLPSSGGADEPSDLEELEKFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTIS 230
Query: 166 RFEAQQLSVANMWKLRPLLKKWLKEVEAE----NLLGLCKMEMILQQSGKWR--RASRER 219
RFEA LS NM KL+PLL+KWL + E+ ++ + + G+ R R S E
Sbjct: 231 RFEALNLSFKNMCKLKPLLEKWLNDAESSPSDPSVSTPSSYPSLSEVFGRKRKKRTSIET 290
Query: 220 RIGNSLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSR 267
I +LEK FQ PKP+ ++IS IA L ++K+VVRVWF NR + R
Sbjct: 291 NIRLTLEKRFQDNPKPSSEEISMIAEQLSMEKEVVRVWFCNRRQKEKR 338
>gi|42476164 POU class 2 homeobox 1 [Homo sapiens]
Length = 743
Score = 121 bits (304), Expect = 7e-28
Identities = 74/181 (40%), Positives = 101/181 (55%), Gaps = 15/181 (8%)
Query: 111 PKLPPPEDISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQ 170
P L P D L+EL+Q AK +Q+R+ LG++Q DVG+A+G L+G SQTTI RFEA
Sbjct: 277 PSLEEPSD----LEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL 332
Query: 171 QLSVANMWKLRPLLKKWLKEVEAENLLGLCKMEMILQQSG-------KWRRASRERRIGN 223
LS NM KL+PLL+KWL + E + L G + +R S E I
Sbjct: 333 NLSFKNMCKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRV 392
Query: 224 SLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVGTAGP 283
+LEK F KPT ++I+ IA L ++K+V+RVWF NR + R +P GT+
Sbjct: 393 ALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKR----INPPSSGGTSSS 448
Query: 284 P 284
P
Sbjct: 449 P 449
>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
Length = 463
Score = 121 bits (303), Expect = 1e-27
Identities = 84/250 (33%), Positives = 128/250 (51%), Gaps = 36/250 (14%)
Query: 51 RPGICPGPDVWRIPLGPLPHEFRGWIAPCRPRLGA-SEAGDWLRRPSEGALPGPYIALRS 109
+PG+ P P++++ LP + +G + +PR G ++ L PS
Sbjct: 135 QPGLLPTPNLFQ-----LPQQTQGALLTSQPRAGLPTQPPKCLEPPSH------------ 177
Query: 110 IPKLPPPEDISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEA 169
PE+ S L+EL+Q A+ +Q+R+ LG++Q DVG+A+G L+G SQTTI RFEA
Sbjct: 178 ------PEEPSD-LEELEQFARTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEA 230
Query: 170 QQLSVANMWKLRPLLKKWLKEVEAENLLGLCKMEMILQQSG----------KWRRASRER 219
LS NM KL+PLL+KWL + E ++ L + +R S E
Sbjct: 231 LNLSFKNMCKLKPLLEKWLNDAETMSVDSSLPSPNQLSSPSLGFDGLPGRRRKKRTSIET 290
Query: 220 RIGNSLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVG 279
+ +LEK F KPT ++I IA L ++K+V+RVWF NR + R N S ++
Sbjct: 291 NVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKR-INPCSAAPMLP 349
Query: 280 TAGPPCPGAP 289
+ G P +P
Sbjct: 350 SPGKPASYSP 359
>gi|170650730 pituitary specific transcription factor 1 isoform beta
[Homo sapiens]
Length = 317
Score = 105 bits (261), Expect = 7e-23
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 123 LKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRP 182
++EL++ A E + +R+ LGY+Q +VG A+ A+ G SQTTICRFE QLS N KL+
Sbjct: 155 IRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKA 214
Query: 183 LLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQISH 242
+L KWL+ EAE + L ++ + + RR + ++LE+ F KP+ Q+I
Sbjct: 215 ILSKWLE--EAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQEIMR 272
Query: 243 IAGCLQLQKDVVRVWFYNRSKMGSR 267
+A L L+K+VVRVWF NR + R
Sbjct: 273 MAEELNLEKEVVRVWFCNRRQREKR 297
>gi|4505955 pituitary specific transcription factor 1 isoform alpha
[Homo sapiens]
Length = 291
Score = 105 bits (261), Expect = 7e-23
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 123 LKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRP 182
++EL++ A E + +R+ LGY+Q +VG A+ A+ G SQTTICRFE QLS N KL+
Sbjct: 129 IRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKA 188
Query: 183 LLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPKPTPQQISH 242
+L KWL+ EAE + L ++ + + RR + ++LE+ F KP+ Q+I
Sbjct: 189 ILSKWLE--EAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQEIMR 246
Query: 243 IAGCLQLQKDVVRVWFYNRSKMGSR 267
+A L L+K+VVRVWF NR + R
Sbjct: 247 MAEELNLEKEVVRVWFCNRRQREKR 271
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 99.8 bits (247), Expect = 3e-21
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 118 DISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKV-----LSQTTICRFEAQQL 172
D+ ++L+ A+ +Q+R+ LG +QADVG A+ L K+ LSQ+TICRFE+ L
Sbjct: 250 DVDADPRDLEAFAERFKQRRIKLGVTQADVGSALANL--KIPGVGSLSQSTICRFESLTL 307
Query: 173 SVANMWKLRPLLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRC 232
S NM L+P+L+ WL+E E + L K E+ K +R S SLE +F
Sbjct: 308 SHNNMIALKPILQAWLEEAEKSHREKLTKPELFNGAEKKRKRTSIAAPEKRSLEAYFAIQ 367
Query: 233 PKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSR 267
P+P+ ++I+ IA L L+K+VVRVWF N+ + R
Sbjct: 368 PRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 402
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 99.4 bits (246), Expect = 4e-21
Identities = 88/273 (32%), Positives = 126/273 (46%), Gaps = 50/273 (18%)
Query: 14 PGSGGGGPRG--------PMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPDVWRIPL 65
PG GGGGP G P P + +L LS AA + +P
Sbjct: 171 PGGGGGGPGGGLLGGSAHPHP-HMHSLGHLSHPAAAAAM-----------------NMPS 212
Query: 66 GPLPHEFRGWIAPCRPRLGASEAGDWLRRPSEGALPGPYIALRSIPKLPPPEDISGIL-- 123
G LPH P L A+ A + A G A + + ++ I
Sbjct: 213 G-LPH----------PGLVAAAAHHGAAAAAAAAAAGQVAAASAAAAVVGAAGLASICDS 261
Query: 124 ----KELQQLAKELRQKRLSLGYSQADVGIAVGALFGKV-----LSQTTICRFEAQQLSV 174
+EL+ A+ +Q+R+ LG +QADVG A+ L K+ LSQ+TICRFE+ LS
Sbjct: 262 DTDPRELEAFAERFKQRRIKLGVTQADVGSALANL--KIPGVGSLSQSTICRFESLTLSH 319
Query: 175 ANMWKLRPLLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRCPK 234
NM L+P+L+ WL+E E + K E+ K +R S SLE +F P+
Sbjct: 320 NNMIALKPILQAWLEEAEGAQREKMNKPELFNGGEKKRKRTSIAAPEKRSLEAYFAVQPR 379
Query: 235 PTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSR 267
P+ ++I+ IA L L+K+VVRVWF N+ + R
Sbjct: 380 PSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 412
>gi|4505965 POU class 4 homeobox 3 [Homo sapiens]
Length = 338
Score = 99.0 bits (245), Expect = 5e-21
Identities = 62/155 (40%), Positives = 90/155 (58%), Gaps = 7/155 (4%)
Query: 118 DISGILKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKV-----LSQTTICRFEAQQL 172
D+ +EL+ A+ +Q+R+ LG +QADVG A+ L K+ LSQ+TICRFE+ L
Sbjct: 179 DVESDPRELEAFAERFKQRRIKLGVTQADVGAALANL--KIPGVGSLSQSTICRFESLTL 236
Query: 173 SVANMWKLRPLLKKWLKEVEAENLLGLCKMEMILQQSGKWRRASRERRIGNSLEKFFQRC 232
S NM L+P+L+ WL+E EA K E+ K +R S SLE +F
Sbjct: 237 SHNNMIALKPVLQAWLEEAEAAYREKNSKPELFNGSERKRKRTSIAAPEKRSLEAYFAIQ 296
Query: 233 PKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSR 267
P+P+ ++I+ IA L L+K+VVRVWF N+ + R
Sbjct: 297 PRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 331
>gi|223890225 POU class 6 homeobox 1 [Homo sapiens]
Length = 301
Score = 98.6 bits (244), Expect = 7e-21
Identities = 81/257 (31%), Positives = 121/257 (47%), Gaps = 19/257 (7%)
Query: 21 PRGPMPLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPDVWRIPLGPLPHEFRGWIAPCR 80
P L+V +T A G+V+ A P P P R P P + + P +
Sbjct: 32 PAPAQSLQVQAVTPQLLLNAQGQVIATLASSP--LPPPVAVRKPSTP-ESPAKSEVQPIQ 88
Query: 81 PRLGASEAGDWLRRPSEGALPG------------PYIA-LRSIPKLPPPEDISGILKELQ 127
P + + P+ A P P ++ L S P P ++ L+E++
Sbjct: 89 PTPTVPQPAVVIASPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIR 148
Query: 128 QLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRFEAQQLSVANMWKLRPLLKKW 187
+ AK + +RLSLG +Q VG A+ A G SQ+ ICRFE ++ + KL+P+L+KW
Sbjct: 149 EFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKW 208
Query: 188 LKEVEAENLLGLCK-MEMILQQSGK--WRRASRERRIGNSLEKFFQRCPKPTPQQISHIA 244
L E E N G ME + + K RR S + +L +F++ P PT Q+I+ IA
Sbjct: 209 LNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIA 268
Query: 245 GCLQLQKDVVRVWFYNR 261
L ++VVRVWF NR
Sbjct: 269 KELNYDREVVRVWFCNR 285
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 70.5 bits (171), Expect = 2e-12
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 40/184 (21%)
Query: 118 DISGI-LKELQQLAKELRQKRLSLGYSQADVGIAVGALFGKVLSQTTICRF--------- 167
++ G+ L+E+++ AK + +RLSLG +Q VG A+ A G SQ+ ICR
Sbjct: 475 EVDGVNLEEIREFAKAFKIRRLSLGLTQTQVGQALSATEGPAYSQSAICRHTILRSHFFL 534
Query: 168 --EAQQLSVA-------------------------NMWKLRPLLKKWLKEVEAENLLGLC 200
EAQ+ ++A + K++P+L++W+ E EA + G+
Sbjct: 535 PQEAQENTIASSLTAKLNPGLLYPARFEKLDITPKSAQKIKPVLERWMAEAEARHRAGMQ 594
Query: 201 KMEMILQQSGKWRRASRERRIGNSLE---KFFQRCPKPTPQQISHIAGCLQLQKDVVRVW 257
+ + +R R +LE F++ P+ Q+++ IA L ++VVRVW
Sbjct: 595 NLTEFIGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVW 654
Query: 258 FYNR 261
F N+
Sbjct: 655 FCNK 658
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 36.2 bits (82), Expect = 0.041
Identities = 40/111 (36%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
Query: 11 CPLPGSGG-GGPRGPMPLRVDTLTWLSTQAAPGRVMVWPAVRPGIC----PGPDVWRIPL 65
CP P +GG GP P R + A P R VW PG PG D R+P
Sbjct: 73 CPSPAAGGLRGPWTAAPGR-QRADEGAAAARPERQRVWARRLPGSAAAPAPGRDALRLPP 131
Query: 66 GPLPHEFRGWIAPCRPRL-GASEAGDWLRRPSEGALPGPYIALRSIPKLPP 115
P P P RPRL A AG P++ A P P A RS P P
Sbjct: 132 PPPP-------PPERPRLPPAGLAGG----PADSAPPSPAPAPRSRPAPRP 171
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 34.7 bits (78), Expect = 0.12
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 19/115 (16%)
Query: 225 LEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYN-RSKMGSRPTNDASPREIVGTAGP 283
LE FQRC ++ + +A L L + V+VWF N R+K D+ R +V
Sbjct: 115 LEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAA 174
Query: 284 PC--------------PGAPV----CFHLGLGLPVDIPHYTRLYSAGVAHSSAPA 320
C PG P C LG + P L + A S+A A
Sbjct: 175 TCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAA 229
>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
sapiens]
Length = 382
Score = 34.3 bits (77), Expect = 0.16
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 193 AENLLGLCKMEMILQ-QSGKWRRASRERRIG------NSLEKFFQRCPKPTPQQISHIAG 245
AE L G ++IL+ + G R R R +LEK FQ+ P +A
Sbjct: 47 AERLAGCTFQDIILEARYGSQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAM 106
Query: 246 CLQLQKDVVRVWFYNR 261
C L + V+VWF NR
Sbjct: 107 CTNLPEARVQVWFKNR 122
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 33.5 bits (75), Expect = 0.27
Identities = 45/154 (29%), Positives = 57/154 (37%), Gaps = 49/154 (31%)
Query: 11 CPL-PGSGGGGPRGPM-PLRVDTLTWLSTQAAPGRVMVWPAVRPGICPGPDVWRIPLGPL 68
CP+ PG GG GP GPM P PG P PG P GP
Sbjct: 500 CPVGPGPGGPGPAGPMGPFN------------PGPFNQGP---PGAPPHAG------GPP 538
Query: 69 PHEF--RGW---------IAPCRPRLGASEAGD----WLRRPSE------GALPGPYIA- 106
PH++ +GW AP P A+ A D W S G +PGP A
Sbjct: 539 PHQYPPQGWGNTYPQWQPPAPHDPSKAAAAAADPNAAWAAYYSHYYQQPPGPVPGPAPAP 598
Query: 107 ----LRSIPKLPPPEDISGILKELQQLAKELRQK 136
+ P PPP S K ++ K++ Q+
Sbjct: 599 AAPPAQGEPPQPPPTGQSDYTKAWEEYYKKIGQQ 632
>gi|210147470 NK2 transcription factor related, locus 6 [Homo
sapiens]
Length = 219
Score = 33.5 bits (75), Expect = 0.27
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 224 SLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDAS---------P 274
+LE+ F++ + + H+A LQL V++WF NR R D S P
Sbjct: 64 ALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHPLTP 123
Query: 275 REIVGTA----GPPC----PGAP 289
R + G PC PGAP
Sbjct: 124 RRVAVPVLVRDGKPCLGPGPGAP 146
>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
Length = 324
Score = 33.1 bits (74), Expect = 0.35
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 225 LEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVGTAGPP 284
LE+ F++ + + +A L+L V++WF NR R D + E+VG PP
Sbjct: 153 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQT-LELVGLPPPP 211
Query: 285 CPGA-----PVCFHLGLGLPVDIPHYTRLYSAGV 313
P A PV G D Y Y G+
Sbjct: 212 PPPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGL 245
>gi|157426823 NK2 homeobox 4 [Homo sapiens]
Length = 354
Score = 32.7 bits (73), Expect = 0.45
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 225 LEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREI--VGTAG 282
LE+ F++ + + H+A + L V++WF N R D + +++ G G
Sbjct: 204 LERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLG 263
Query: 283 PPCPGAP 289
PP P P
Sbjct: 264 PPPPPPP 270
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 32.3 bits (72), Expect = 0.59
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 209 SGKWRRASRERRIGNS-----LEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRS- 262
+GK ++ + R I +S L++ FQ+ + + +A L L + V++WF NR
Sbjct: 146 NGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRS 205
Query: 263 ------KMGSRPTNDASPREIVGTAGPPCPGAPV 290
K G P S + +A PPC PV
Sbjct: 206 KFKKMWKSGEIP----SEQHPGASASPPCASPPV 235
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 32.3 bits (72), Expect = 0.59
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 224 SLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNR 261
+LEK FQR P +A L +D VRVWF NR
Sbjct: 176 ALEKEFQRGQYPDSVARGKLATATSLPEDTVRVWFSNR 213
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 32.3 bits (72), Expect = 0.59
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 210 GKWRRASRERRIGN-----SLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYN-RSK 263
G RR R R I + +LE F + P +AG ++L+++ V VWF N R+K
Sbjct: 121 GSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEVWFKNRRAK 180
Query: 264 MGSRPTNDASPREIVGTAGPP 284
+ AS R + G P
Sbjct: 181 WRHQKRASASARLLPGVKKSP 201
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 32.3 bits (72), Expect = 0.59
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 243 IAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVGTAGPPCPGA 288
IA L L + V+VWF NR R T P + P CPGA
Sbjct: 176 IAALLDLTERQVKVWFQNRRMKHKRQTQHREPPD----GEPACPGA 217
>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
Length = 292
Score = 32.0 bits (71), Expect = 0.77
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 223 NSLEKFFQRCPKPTPQQISHIAGCLQLQKDVVRVWFYNRSKMGSRPTNDASPREIVGTAG 282
N LE+ F P ++ L L + V+VWF NR + N I+GTA
Sbjct: 130 NELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTAN 189
Query: 283 --PPCPGAPVCFHLGLGLPVDIPHYTRLYSAGVAHS 316
C AP L +P +L GVAH+
Sbjct: 190 HLDACRVAPYVNMGALRMPFQ-QVQAQLQLEGVAHA 224
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.140 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,365,660
Number of Sequences: 37866
Number of extensions: 930839
Number of successful extensions: 3330
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 3213
Number of HSP's gapped (non-prelim): 159
length of query: 328
length of database: 18,247,518
effective HSP length: 103
effective length of query: 225
effective length of database: 14,347,320
effective search space: 3228147000
effective search space used: 3228147000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.