Guide to the Human Genome
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Name: TNFRSF25 Sequence: fasta or formatted (380aa) NCBI GI: 23200023
Description:

tumor necrosis factor receptor superfamily, member 25 isoform 3 precursor

Referenced in:

TNF and Related Signals

Other entries for this name:
alt prot [426aa] tumor necrosis factor receptor superfamily, member 25 isoform 1 p...
alt prot [372aa] tumor necrosis factor receptor superfamily, member 25 isoform 4 p...
alt prot [234aa] tumor necrosis factor receptor superfamily, member 25 isoform 7 p...
alt prot [417aa] tumor necrosis factor receptor superfamily, member 25 isoform 2 p...
alt prot [181aa] tumor necrosis factor receptor superfamily, member 25 isoform 12 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         40           3
 C cysteine            8.4         32           2
 D aspartate           4.5         17           1
 E glutamate           6.3         24           1
 F phenylalanine       2.1          8           1
 G glycine             8.2         31           2
 H histidine           2.4          9           2
 I isoleucine          1.1          4           1
 K lysine              1.8          7           2
 L leucine             9.5         36           3
 M methionine          1.8          7           2
 N asparagine          1.6          6           1
 P proline             8.4         32           3
 Q glutamine           5.8         22           3
 R arginine            7.1         27           2
 S serine              6.3         24           3
 T threonine           5.0         19           1
 V valine              5.3         20           1
 W tryptophan          2.1          8           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor receptor superfamily, member 2... 
TNFRSF25              0.975   tumor necrosis factor receptor superfamily, member 25...
TNFRSF25              0.917   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.815   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.483   tumor necrosis factor receptor superfamily, member 2...
TNFRSF25              0.438   tumor necrosis factor receptor superfamily, member 2...
TNFRSF1A              0.099   tumor necrosis factor receptor 1 precursor 
TNFRSF14              0.060   tumor necrosis factor receptor superfamily, member 1...
FAS                   0.050   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.050   tumor necrosis factor receptor superfamily, member 6...
FAS                   0.050   tumor necrosis factor receptor superfamily, member 6 ...
TNFRSF11A             0.043   tumor necrosis factor receptor superfamily, member 11...
CD27                  0.036   tumor necrosis factor receptor superfamily, member 7 ...
LTBR                  0.036   lymphotoxin beta receptor 
TNFRSF10B             0.035   tumor necrosis factor receptor superfamily, member ...
TNFRSF1B              0.030   tumor necrosis factor receptor 2 precursor 
CD40                  0.029   CD40 antigen isoform 1 precursor 
CD40                  0.029   CD40 antigen isoform 2 precursor 
TNFRSF21              0.028   tumor necrosis factor receptor superfamily, member 21...
TNFRSF11B             0.025   osteoprotegerin precursor 
TNFRSF19              0.025   tumor necrosis factor receptor superfamily, member 1...
TNFRSF19              0.025   tumor necrosis factor receptor superfamily, member 1...
KIAA1324L             0.025   hypothetical protein LOC222223 isoform 2 
KIAA1324L             0.025   hypothetical protein LOC222223 isoform 1 
LAMC3                 0.024   laminin, gamma 3 precursor 
VWCE                  0.024   von Willebrand factor C and EGF domains 
MEGF11                0.023   multiple EGF-like-domains 11 
LAMC1                 0.021   laminin, gamma 1 precursor 
TNFRSF10B             0.021   tumor necrosis factor receptor superfamily, member ...
ZAN                   0.021   zonadhesin isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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