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Search of human proteins with 23111038
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23111038 sorting nexin 2 [Homo sapiens]
(519 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23111038 sorting nexin 2 [Homo sapiens] 1013 0.0
gi|23111034 sorting nexin 1 isoform a [Homo sapiens] 593 e-170
gi|23111032 sorting nexin 1 isoform b [Homo sapiens] 537 e-153
gi|23111036 sorting nexin 1 isoform c [Homo sapiens] 501 e-142
gi|23111047 sorting nexin 5 [Homo sapiens] 107 3e-23
gi|7657599 sorting nexin 5 [Homo sapiens] 107 3e-23
gi|194294540 sorting nexin 7 isoform a [Homo sapiens] 106 6e-23
gi|153791707 sorting nexin family member 30 [Homo sapiens] 100 3e-21
gi|72534838 sorting nexin 6B [Homo sapiens] 100 3e-21
gi|23111055 sorting nexin 7 isoform b [Homo sapiens] 93 5e-19
gi|88703041 sorting nexin 6 isoform b [Homo sapiens] 86 8e-17
gi|4507143 sorting nexin 3 isoform a [Homo sapiens] 72 2e-12
gi|4507145 sorting nexin 4 [Homo sapiens] 69 8e-12
gi|23111030 sorting nexin 12 [Homo sapiens] 67 4e-11
gi|23943858 sorting nexin 8 [Homo sapiens] 61 2e-09
gi|7706706 sorting nexin 9 [Homo sapiens] 59 1e-08
gi|23111026 sorting nexin 11 [Homo sapiens] 57 5e-08
gi|23111028 sorting nexin 11 [Homo sapiens] 57 5e-08
gi|23397574 sorting nexin 33 [Homo sapiens] 54 5e-07
gi|88703043 sorting nexin 6 isoform a [Homo sapiens] 50 7e-06
gi|23111023 sorting nexin 10 [Homo sapiens] 49 8e-06
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 49 8e-06
gi|157057545 sorting nexin 18 isoform a [Homo sapiens] 49 1e-05
gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [H... 49 1e-05
gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 49 1e-05
gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 49 1e-05
gi|68800430 HCLS1 binding protein 3 [Homo sapiens] 48 2e-05
gi|221219020 NYD-SP11 protein [Homo sapiens] 47 3e-05
gi|157502171 sorting nexin 19 [Homo sapiens] 46 7e-05
gi|154091028 sorting nexin 29 [Homo sapiens] 45 2e-04
>gi|23111038 sorting nexin 2 [Homo sapiens]
Length = 519
Score = 1013 bits (2620), Expect = 0.0
Identities = 519/519 (100%), Positives = 519/519 (100%)
Query: 1 MAAEREPPPLGDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEPASLPAEDISANSNGPK 60
MAAEREPPPLGDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEPASLPAEDISANSNGPK
Sbjct: 1 MAAEREPPPLGDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEPASLPAEDISANSNGPK 60
Query: 61 PTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSA 120
PTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSA
Sbjct: 61 PTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSA 120
Query: 121 PVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSV 180
PVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSV
Sbjct: 121 PVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSV 180
Query: 181 KRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALE 240
KRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALE
Sbjct: 181 KRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALE 240
Query: 241 RYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMN 300
RYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMN
Sbjct: 241 RYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMN 300
Query: 301 ESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTAL 360
ESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTAL
Sbjct: 301 ESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTAL 360
Query: 361 SRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDA 420
SRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDA
Sbjct: 361 SRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDA 420
Query: 421 QITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEK 480
QITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEK
Sbjct: 421 QITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEK 480
Query: 481 ERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA 519
ERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA
Sbjct: 481 ERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA 519
>gi|23111034 sorting nexin 1 isoform a [Homo sapiens]
Length = 522
Score = 593 bits (1530), Expect = e-170
Identities = 318/532 (59%), Positives = 390/532 (73%), Gaps = 33/532 (6%)
Query: 2 AAEREPPPL-----------GDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEPASLPAE 50
A+ER PPP G +P + +GED+FT + + LP
Sbjct: 10 ASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPKITTSLLPI- 68
Query: 51 DISANSNGPKPTEVVLDDDRE--DLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTL 108
+NG K + + D+E DLFA+AT E+SLDS + V TL
Sbjct: 69 -----NNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQ----------KKVLAKTL 113
Query: 109 IA-PRIESKSMSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTK 167
I+ P E+ + S P + EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+
Sbjct: 114 ISLPPQEATNSSKP---QPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQ 170
Query: 168 TSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSS 227
TSL +F +F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSS
Sbjct: 171 TSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSS 230
Query: 228 STEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNK 287
S EF+EKRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQ LSGAG+L+M NK
Sbjct: 231 SAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNK 290
Query: 288 AADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKS 347
A DAV+KMTIKMNESD WFEEK Q+ E +Q+LRKLH VE LV HRKEL+ NTA FAKS
Sbjct: 291 ATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKS 350
Query: 348 AAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVF 407
AMLG+SED+TALSRALSQLAEVEEKI+QLHQEQA DF++ +ELLSDYIRL+A V+ F
Sbjct: 351 LAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAF 410
Query: 408 DHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQI 467
D RMK WQ+W+DAQ TL KKREAEA+++ ANKPDK+QQAK+EI EWE++V Q ERDFE+I
Sbjct: 411 DQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERI 470
Query: 468 SKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA 519
S +RKEV RFEKE+ KDFK +IKYLE+L+ +QQQL KYWEAFLPEAKAI+
Sbjct: 471 STVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 522
>gi|23111032 sorting nexin 1 isoform b [Homo sapiens]
Length = 457
Score = 537 bits (1384), Expect = e-153
Identities = 287/478 (60%), Positives = 352/478 (73%), Gaps = 37/478 (7%)
Query: 42 PEPASLPAEDISANSNGPKPTEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVT 101
P P P + +A + P+ + D + ED+F A ++S SP +T
Sbjct: 17 PFPGLEPESEGAAGGSEPEAGDS--DTEGEDIFTGAA------------VVSKHQSPKIT 62
Query: 102 PVTPTTLIAPRIESKSMSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMA 161
T+L+ SK + E +++ D+F GDGMNAY+A
Sbjct: 63 ----TSLLPINNGSK--------ENGIHEEQDQEPQDLF-----------AGDGMNAYVA 99
Query: 162 YRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 221
Y+VTT+TSL +F +F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKV
Sbjct: 100 YKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 159
Query: 222 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGI 281
GKEDSSS EF+EKRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQ LSGAG+
Sbjct: 160 GKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGL 219
Query: 282 LRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANT 341
L+M NKA DAV+KMTIKMNESD WFEEK Q+ E +Q+LRKLH VE LV HRKEL+ NT
Sbjct: 220 LKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNT 279
Query: 342 AAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIA 401
A FAKS AMLG+SED+TALSRALSQLAEVEEKI+QLHQEQA DF++ +ELLSDYIRL+A
Sbjct: 280 AQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLA 339
Query: 402 AVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGE 461
V+ FD RMK WQ+W+DAQ TL KKREAEA+++ ANKPDK+QQAK+EI EWE++V Q E
Sbjct: 340 IVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYE 399
Query: 462 RDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA 519
RDFE+IS +RKEV RFEKE+ KDFK +IKYLE+L+ +QQQL KYWEAFLPEAKAI+
Sbjct: 400 RDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 457
>gi|23111036 sorting nexin 1 isoform c [Homo sapiens]
Length = 474
Score = 501 bits (1290), Expect = e-142
Identities = 285/532 (53%), Positives = 350/532 (65%), Gaps = 81/532 (15%)
Query: 2 AAEREPPPL-----------GDGKPTDFEDLEDGEDLFTSTVSTLESSPSSPEPASLPAE 50
A+ER PPP G +P + +GED+FT + + LP
Sbjct: 10 ASERLPPPFPGLEPESEGAAGGSEPEAGDSDTEGEDIFTGAAVVSKHQSPKITTSLLPI- 68
Query: 51 DISANSNGPKPTEVVLDDDRE--DLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTL 108
+NG K + + D+E DLFA+AT E+SLDS + V TL
Sbjct: 69 -----NNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQ----------KKVLAKTL 113
Query: 109 IA-PRIESKSMSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTK 167
I+ P E+ + S P + EE+EEE D FD+ +G++DPEK+GDGMNAY+AY+VTT+
Sbjct: 114 ISLPPQEATNSSKP---QPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQ 170
Query: 168 TSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSS 227
TSL +F +F+VKRRFSDFLGL+ KL+ K+ G+IVPP PEKS++GMTKVKVGKEDSS
Sbjct: 171 TSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSS 230
Query: 228 STEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNK 287
S EF+EKRRAALERYLQR V HPT+LQDPD+R+FLE ELPRAV TQ LSGAG+L+M NK
Sbjct: 231 SAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNK 290
Query: 288 AADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKS 347
A DAV+KMTIKMNESD WFEEK Q+ E +Q+LRKLH VE LV HRKEL+ NTA FAKS
Sbjct: 291 ATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKS 350
Query: 348 AAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVF 407
AMLG+SED+TALSRALSQLAEVEEKI+QLHQEQA DF++ +ELLSDYIRL+A V+
Sbjct: 351 LAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVR--- 407
Query: 408 DHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQI 467
WE++V Q ERDFE+I
Sbjct: 408 ---------------------------------------------WESRVTQYERDFERI 422
Query: 468 SKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA 519
S +RKEV RFEKE+ KDFK +IKYLE+L+ +QQQL KYWEAFLPEAKAI+
Sbjct: 423 STVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 474
>gi|23111047 sorting nexin 5 [Homo sapiens]
Length = 404
Score = 107 bits (266), Expect = 3e-23
Identities = 101/379 (26%), Positives = 175/379 (46%), Gaps = 55/379 (14%)
Query: 141 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 200
DI +S+ +KV + V TKT+L F EFSV R+ DF+ LH L +
Sbjct: 34 DIPDALSERDKV--------KFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDY 85
Query: 201 VGYIVPPAPEKSIVG-----MTKVKVGKEDSSSTEFVEKRR--------------AALER 241
G I+PPAP K M K+ G+ + EF + ++ ++ E
Sbjct: 86 AGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEV 145
Query: 242 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAADAVNKMTIKM 299
+LQR HP L +D + FLE + R NT+ + G G + V K+AD V +K
Sbjct: 146 FLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEVLFTGVK- 203
Query: 300 NESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELS---ANTAAFAKSAAMLGNSED 356
E D +FE+++ N +++ V + + K ++ +TAA S A+ E+
Sbjct: 204 -EVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHTAACLHSLAL----EE 258
Query: 357 HTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQK 416
T + + L ++AE+ EK+ ++ + + +ELL Y+ I A K + R K
Sbjct: 259 PTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALID 318
Query: 417 WEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVG 476
+E++ L DK + +++ EA Q+ + FEQ+S++ ++E+
Sbjct: 319 YENSNKAL----------------DKARLKSKDVKLAEAHQQECCQKFEQLSESAKEELI 362
Query: 477 RFEKERVKDFKTVIIKYLE 495
F+++RV F+ +I+ E
Sbjct: 363 NFKRKRVAAFRKNLIEMSE 381
>gi|7657599 sorting nexin 5 [Homo sapiens]
Length = 404
Score = 107 bits (266), Expect = 3e-23
Identities = 101/379 (26%), Positives = 175/379 (46%), Gaps = 55/379 (14%)
Query: 141 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 200
DI +S+ +KV + V TKT+L F EFSV R+ DF+ LH L +
Sbjct: 34 DIPDALSERDKV--------KFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDY 85
Query: 201 VGYIVPPAPEKSIVG-----MTKVKVGKEDSSSTEFVEKRR--------------AALER 241
G I+PPAP K M K+ G+ + EF + ++ ++ E
Sbjct: 86 AGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEV 145
Query: 242 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAADAVNKMTIKM 299
+LQR HP L +D + FLE + R NT+ + G G + V K+AD V +K
Sbjct: 146 FLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNTKEMFG-GFFKSVVKSADEVLFTGVK- 203
Query: 300 NESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELS---ANTAAFAKSAAMLGNSED 356
E D +FE+++ N +++ V + + K ++ +TAA S A+ E+
Sbjct: 204 -EVDDFFEQEKNFLINYYNRIKDSCVKADKMTRSHKNVADDYIHTAACLHSLAL----EE 258
Query: 357 HTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQK 416
T + + L ++AE+ EK+ ++ + + +ELL Y+ I A K + R K
Sbjct: 259 PTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRYYMLNIEAAKDLLYRRTKALID 318
Query: 417 WEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVG 476
+E++ L DK + +++ EA Q+ + FEQ+S++ ++E+
Sbjct: 319 YENSNKAL----------------DKARLKSKDVKLAEAHQQECCQKFEQLSESAKEELI 362
Query: 477 RFEKERVKDFKTVIIKYLE 495
F+++RV F+ +I+ E
Sbjct: 363 NFKRKRVAAFRKNLIEMSE 381
>gi|194294540 sorting nexin 7 isoform a [Homo sapiens]
Length = 451
Score = 106 bits (264), Expect = 6e-23
Identities = 104/465 (22%), Positives = 190/465 (40%), Gaps = 68/465 (14%)
Query: 53 SANSNGPKPTEVV-LDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAP 111
S+ S+ EV+ LD+D +DL + + +D P++ P +P ++I
Sbjct: 34 SSGSSALLQAEVLDLDEDEDDLEVFSKDASLMDMNSFSPMM---------PTSPLSMI-- 82
Query: 112 RIESKSMSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLS 171
+I+ E D+ D+ I V +PE + ++ YR+ TKTS
Sbjct: 83 -----------------NQIKFEDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRG 125
Query: 172 MFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEF 231
F SEF V+RR+ DFL L KL + H I+PP PEK IV G + + +F
Sbjct: 126 EFDSSEFEVRRRYQDFLWLKGKL--EEAHPTLIIPPLPEKFIV------KGMVERFNDDF 177
Query: 232 VEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADA 291
+E RR AL ++L R HPTL + D + FL + +++ G G+L + + A
Sbjct: 178 IETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAW--ELSSHKKQGPGLLSRMGQTVRA 235
Query: 292 VNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAML 351
V + F E E Q++ + + + +E + +
Sbjct: 236 VASSMRGVKNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYGPIHILW 295
Query: 352 GNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRM 411
SE+ L L +A ++ + +++ ++ +Y+ + GV R
Sbjct: 296 SASEED--LVDTLKDVASCIDRCCKATEKRMSGLSEALLPVVHEYVLYSEMLMGVMKRRD 353
Query: 412 KCWQKWEDAQITLLKKREAEAKMM---VANKPDKIQQAKNEIR-EWEAKVQQGERDFEQI 467
+ Q D+++ +L ++A+ ++ + DK++ A N ++ +WE
Sbjct: 354 QI-QAELDSKVEVLTYKKADTDLLPEEIGKLEDKVECANNALKADWE------------- 399
Query: 468 SKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFL 512
R+++ D K E + +Q + WE+FL
Sbjct: 400 ---------RWKQNMQNDIKLAFTDMAEENIHYYEQCLATWESFL 435
>gi|153791707 sorting nexin family member 30 [Homo sapiens]
Length = 437
Score = 100 bits (249), Expect = 3e-21
Identities = 95/398 (23%), Positives = 183/398 (45%), Gaps = 56/398 (14%)
Query: 127 SREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSD 186
+R +++++ +G+ D+ + V DP+K M Y+ YR+TTK++ F E+SV+RR+ D
Sbjct: 76 NRLQLDDDIDGETRDLFVIVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQD 135
Query: 187 FLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRT 246
F L SKL +++PP PEK +V G D S EFVE RR AL+++L+R
Sbjct: 136 FDWLRSKLEES--QPTHLIPPLPEKFVV------KGVVDRFSEEFVETRRKALDKFLKRI 187
Query: 247 VKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVN---KMTIKMNESD 303
HP L + FL + +L N G +L + ++ V K+ + E
Sbjct: 188 TDHPVLSFNEHFNIFLTAKDL----NAYKKQGIALLTRMGESVKHVTGGYKLRTRPLEFA 243
Query: 304 A------WFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGN-SED 356
A F K + + Q++ K +E LV EL ++ +A+ G +E
Sbjct: 244 AIGDYLDTFALKLGTIDRIAQRIIK--EEIEYLV----ELREYGPVYSTWSALEGELAEP 297
Query: 357 HTALSRALSQLA-EVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQ 415
+S + + +EE D + ++ F +L +YI
Sbjct: 298 LEGVSACIGNCSTALEELTDDMTED--------FLPVLREYI------------------ 331
Query: 416 KWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEV 475
+ D+ ++LKKR+ + + K + + K + + A V++ + E + ++ ++
Sbjct: 332 LYSDSMKSVLKKRD-QVQAEYEAKLEAVALRKEDRPKVPADVEKCQDRMECFNADLKADM 390
Query: 476 GRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLP 513
R++ + +DF+ +++ + +Q ++ + WE+ +P
Sbjct: 391 ERWQNNKRQDFRQLLMGMADKNIQYYEKCLMAWESIIP 428
>gi|72534838 sorting nexin 6B [Homo sapiens]
Length = 403
Score = 100 bits (249), Expect = 3e-21
Identities = 95/376 (25%), Positives = 170/376 (45%), Gaps = 46/376 (12%)
Query: 141 DIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 200
+I VS+ +KV + V TK+ L F+++EFSV R+ +F+ LH +
Sbjct: 29 EISDAVSERDKV--------KFTVQTKSCLPHFAQTEFSVVRQHEEFIWLHDAYVENEEY 80
Query: 201 VGYIVPPAPEKSIVGMTK---VKVGKEDSSST--EFVEKRR--------------AALER 241
G I+PPAP + ++ K+G+ DSS T EF + ++ A E
Sbjct: 81 AGLIIPPAPPRPDFEASREKLQKLGEGDSSVTREEFAKMKQELEAEYLAIFKKTVAMHEV 140
Query: 242 YLQRTVKHPTLLQDPDLRQFLESSE--LPRAVNTQALSGAGILRMVNKAADAVNKMTIKM 299
+LQR HPTL +D + FLE + R N + L G + +V A +A+ +
Sbjct: 141 FLQRLAAHPTLRRDHNFFVFLEYGQDLSVRGKNRKELLGGFLRNIVKSADEALITGMSGL 200
Query: 300 NESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTA 359
E D +FE ++ ++R + + ++ K L+ + + + + LG E +
Sbjct: 201 KEVDDFFEHERTFLLEYHTRIRDACLRADRVMRAHKCLADDYIPISAALSSLGTQEVN-Q 259
Query: 360 LSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWED 419
L + +LAE+ E++ +L A + S++L Y+R A K + R++ +E+
Sbjct: 260 LRTSFLKLAELFERLRKLEGRVASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYEN 319
Query: 420 AQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFE 479
A L DK + E+R E+ Q + FE++S + ++E+ F+
Sbjct: 320 ANKAL----------------DKARTRNREVRPAESHQQLCCQRFERLSDSAKQELMDFK 363
Query: 480 KERVKDFKTVIIKYLE 495
RV F+ +I+ E
Sbjct: 364 SRRVSSFRKNLIELAE 379
>gi|23111055 sorting nexin 7 isoform b [Homo sapiens]
Length = 336
Score = 93.2 bits (230), Expect = 5e-19
Identities = 76/308 (24%), Positives = 136/308 (44%), Gaps = 13/308 (4%)
Query: 130 EIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLG 189
+I+ E D+ D+ I V +PE + ++ YR+ TKTS F SEF V+RR+ DFL
Sbjct: 20 QIKFEDEPDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLW 79
Query: 190 LHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 249
L KL + H I+PP PEK IV G + + +F+E RR AL ++L R H
Sbjct: 80 LKGKL--EEAHPTLIIPPLPEKFIV------KGMVERFNDDFIETRRKALHKFLNRIADH 131
Query: 250 PTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEEK 309
PTL + D + FL + +++ G G+L + + AV + F E
Sbjct: 132 PTLTFNEDFKIFLTAQAW--ELSSHKKQGPGLLSRMGQTVRAVASSMRGVKNRPEEFMEM 189
Query: 310 QQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAE 369
E Q++ + + + +E + + SE+ L L +A
Sbjct: 190 NNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYGPIHILWSASEED--LVDTLKDVAS 247
Query: 370 VEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQITLLKKRE 429
++ + +++ ++ +Y+ + GV R + Q D+++ +L ++
Sbjct: 248 CIDRCCKATEKRMSGLSEALLPVVHEYVLYSEMLMGVMKRRDQI-QAELDSKVEVLTYKK 306
Query: 430 AEAKMMVA 437
A+ + +A
Sbjct: 307 ADTDLCLA 314
>gi|88703041 sorting nexin 6 isoform b [Homo sapiens]
Length = 418
Score = 85.9 bits (211), Expect = 8e-17
Identities = 89/394 (22%), Positives = 165/394 (41%), Gaps = 50/394 (12%)
Query: 125 DRSREEIEEEANGDI---FDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVK 181
DR + I + D DI +S+ +KV + V TK+SL F ++EFSV
Sbjct: 28 DRGLKAINVDLQSDAALQVDISDALSERDKV--------KFTVHTKSSLPNFKQNEFSVV 79
Query: 182 RRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGK----EDSSSTEFVEKRRA 237
R+ +F+ LH + GYI+PPAP + ++ K+ K E S + E K +
Sbjct: 80 RQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQ 139
Query: 238 ALER---------------YLQRTVKHPTLLQDPDLRQFLE-SSELPRAVNTQALSGAGI 281
LE +L R HP L +D + FLE + +L +
Sbjct: 140 ELEAEYLAIFKKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDF 199
Query: 282 LRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANT 341
+ + K+AD V +K + D +FE ++ +++ + + K + +
Sbjct: 200 FKNMVKSADGVIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDY 257
Query: 342 AAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIA 401
S LG ++D T + + +++E+ +K ++ + + S+LL Y+R
Sbjct: 258 NRIGSSLYALG-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQ 316
Query: 402 AVKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGE 461
A K + R + +E+A L DK + ++ + E Q
Sbjct: 317 AAKDLLYRRSRSLVDYENANKAL----------------DKARAKNKDVLQAETSQQLCC 360
Query: 462 RDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLE 495
+ FE+IS++ ++E+ F+ RV F+ +++ E
Sbjct: 361 QKFEKISESAKQELIDFKTRRVAAFRKNLVELAE 394
>gi|4507143 sorting nexin 3 isoform a [Homo sapiens]
Length = 162
Score = 71.6 bits (174), Expect = 2e-12
Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
+EI VS+P+ VG G + Y + KT+L +F E +V+RR+SDF L S+L +
Sbjct: 29 LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSELERE---S 85
Query: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
+VPP P K+ + + G + F+E+R+ LE+++ + HP + L F
Sbjct: 86 KVVVPPLPGKAFLRQLPFR-GDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMF 144
Query: 262 LESSELPRA 270
L+ + ++
Sbjct: 145 LQDEIIDKS 153
>gi|4507145 sorting nexin 4 [Homo sapiens]
Length = 450
Score = 69.3 bits (168), Expect = 8e-12
Identities = 95/410 (23%), Positives = 163/410 (39%), Gaps = 70/410 (17%)
Query: 142 IEIGVSDPEKVGDGMNA------YMAYRVTTKTSLSMFSKSEF--SVKRRFSDFLGLHSK 193
IEI VS+ EK G NA Y AY + T++ +S S+ RR+S+F L S
Sbjct: 58 IEISVSEAEK-RTGRNAMNMQETYTAYLIETRSVEHTDGQSVLTDSLWRRYSEFELLRSY 116
Query: 194 LASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLL 253
L Y H+ +VPP PEK + D+ +FVE+RR LE +L R HP L
Sbjct: 117 LLVYYPHI--VVPPLPEKRAEFVWHKL--SADNMDPDFVERRRIGLENFLLRIASHPILC 172
Query: 254 QDPDLRQFL-ESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEEKQQQ 312
+D FL + VN G + A+N T ++ D F + +
Sbjct: 173 RDKIFYLFLTQEGNWKETVNE-----TGFQLKADSRLKALN-ATFRVKNPDKRFTDLKHY 226
Query: 313 FENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEE 372
+ L + L + V A V R + G + H R S+ + +E+
Sbjct: 227 SDELQSVISHL-LRVRARVADR---------------LYGVYKVHGNYGRVFSEWSAIEK 270
Query: 373 KI-DQLHQEQAFADFYM------------FSELLSDYIRLIAAVKGVF-DHRMKCWQKWE 418
++ D L D Y +++ L +Y+ A++ V H + +
Sbjct: 271 EMGDGLQSAGHHMDVYASSIDDILEDEEHYADQLKEYLFYAEALRAVCRKHELMQYDLEM 330
Query: 419 DAQITLLKKREAE----------------AKMMVANKPD----KIQQAKNEIREWEAKVQ 458
AQ KK++ E K+ P+ +I+ + +I E E +++
Sbjct: 331 AAQDLASKKQQCEELVTGTVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLK 390
Query: 459 QGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYW 508
+ + K ++ RF++++ +D K +I Y + ++ I+ W
Sbjct: 391 SKNLEGREFVKNAWADIERFKEQKNRDLKEALISYAVMQISMCKKGIQVW 440
>gi|23111030 sorting nexin 12 [Homo sapiens]
Length = 162
Score = 67.0 bits (162), Expect = 4e-11
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
+EI + +P+ VG G + Y V +T+L +F E V+RR+SDF L ++L
Sbjct: 30 LEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER---DS 86
Query: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
+VPP P K++ + G E F+E+RR LE+++ + HP + L F
Sbjct: 87 KIVVPPLPGKALKRQLPFR-GDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMF 145
Query: 262 LESSELPR 269
L+ + R
Sbjct: 146 LQEEAIDR 153
>gi|23943858 sorting nexin 8 [Homo sapiens]
Length = 465
Score = 61.2 bits (147), Expect = 2e-09
Identities = 89/420 (21%), Positives = 160/420 (38%), Gaps = 83/420 (19%)
Query: 77 ATEEVSLDSPEREPILSSEPSPAVTPVTPTTLI----APRIESKSMSAPVIFDRSREEIE 132
A E D E +P S P+P + P ++ AP P++ + +E+
Sbjct: 16 AAAEAEADE-EADPPASDLPTPQA--IEPQAIVQQVPAPSRMQMPQGNPLLLSHTLQELL 72
Query: 133 EEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHS 192
D +E+ PEK G + ++ Y V+++ S SV RR++DF+
Sbjct: 73 AR---DTVQVEL---IPEKKGLFLK-HVEYEVSSQRFKS-------SVYRRYNDFVVFQE 118
Query: 193 KLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTL 252
L K+ + +VP P K ++G + EF+E RR AL+R++ +HP
Sbjct: 119 MLLHKFPY--RMVPALPPKRMLGADR-----------EFIEARRRALKRFVNLVARHPLF 165
Query: 253 LQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADAVNKMTIKMN-----------E 301
+D L+ FL + SG+ + + ++A V + +
Sbjct: 166 SEDVVLKLFL------------SFSGSDVQNKLKESAQCVGDEFLNCKLATRAKDFLPAD 213
Query: 302 SDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLG--------- 352
A F ++ N+ KL E + + +A+ F K + +G
Sbjct: 214 IQAQFAISRELIRNIYNSFHKLRDRAERIASRAIDNAADLLIFGKELSAIGSDTTPLPSW 273
Query: 353 ---NSEDHTALSRAL-------SQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAA 402
NS +L +AL + LA+ + + + +F +LL Y L
Sbjct: 274 AALNSSTWGSLKQALKGLSVEFALLADKAAQQGKQEENDVVEKLNLFLDLLQSYKDLCER 333
Query: 403 -VKGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGE 461
KGV + K+ L KR+ + +P+ ++Q ++ I E E +Q E
Sbjct: 334 HEKGVLHKHQRALHKYS------LMKRQMMSATAQNREPESVEQLESRIVEQENAIQTME 387
>gi|7706706 sorting nexin 9 [Homo sapiens]
Length = 595
Score = 58.5 bits (140), Expect = 1e-08
Identities = 99/497 (19%), Positives = 183/497 (36%), Gaps = 84/497 (16%)
Query: 29 TSTVSTLESSPSSPE----PASLPAEDISANSNGPKPTEVVLDDDREDLFAEATEEVSLD 84
T+T + +++ P+ PA+ +D + +GPK + D + D
Sbjct: 138 TNTPNNWDTAFGHPQAYQGPATGDDDDWDEDWDGPKSSSYFKDSESADAGGAQRGNSRAS 197
Query: 85 SPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSAPVIF-DRSREEIEEEANGDIFDIE 143
S + L+ P A P T L+A ++ P+I D + + D
Sbjct: 198 SSSMKIPLNKFPGFA-KPGTEQYLLAKQLAKPKEKIPIIVGDYGPMWVYPTSTFDCV--- 253
Query: 144 IGVSDPEKVGD--GMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
V+DP K G+ +Y+ Y++T + + SV R+ F L+ +L K+
Sbjct: 254 --VADPRKGSKMYGLKSYIEYQLTP-------TNTNRSVNHRYKHFDWLYERLLVKF-GS 303
Query: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
+P P+K + G + EF++ R L+ ++ R +HP + + +QF
Sbjct: 304 AIPIPSLPDKQVTGRFE----------EEFIKMRMERLQAWMTRMCRHPVISESEVFQQF 353
Query: 262 L------ESSELPRAVNTQALSGAGI------------LRMVNKAADAVNKMTIKMNES- 302
L E R L+G I L + + +AV K T M++
Sbjct: 354 LNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGKFTKAMDDGV 413
Query: 303 DAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSR 362
Q+ ++ L K + + K L + F+ S + T L+
Sbjct: 414 KELLTVGQEHWKRCTGPLPKEYQKI------GKALQSLATVFSSS-----GYQGETDLND 462
Query: 363 ALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQI 422
A+++ + E+I L EQ D + E +Y + + +K +
Sbjct: 463 AITEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVK---- 518
Query: 423 TLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKER 482
E+ +VA +Q +N ++ +S ++ E+ F R
Sbjct: 519 --------ESDKLVATSKITLQDKQNMVKR-----------VSIMSYALQAEMNHFHSNR 559
Query: 483 VKDFKTVIIKYLESLVQ 499
+ D+ +VI YLE VQ
Sbjct: 560 IYDYNSVIRLYLEQQVQ 576
>gi|23111026 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 56.6 bits (135), Expect = 5e-08
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 142 IEIGVSDPEKVGDGM-NAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 200
I + V DP +G N+Y+ Y++ T+ F+ V+RR+ +F+ L +L +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQR---N 73
Query: 201 VGYI-VPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLR 259
G + VP P KS T S EF+EKRR L+ +L++ ++ LL D L
Sbjct: 74 AGLVPVPELPGKSTFFGT----------SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLH 123
Query: 260 QFLES 264
FL+S
Sbjct: 124 LFLQS 128
>gi|23111028 sorting nexin 11 [Homo sapiens]
Length = 270
Score = 56.6 bits (135), Expect = 5e-08
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 15/125 (12%)
Query: 142 IEIGVSDPEKVGDGM-NAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 200
I + V DP +G N+Y+ Y++ T+ F+ V+RR+ +F+ L +L +
Sbjct: 17 ITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQR---N 73
Query: 201 VGYI-VPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLR 259
G + VP P KS T S EF+EKRR L+ +L++ ++ LL D L
Sbjct: 74 AGLVPVPELPGKSTFFGT----------SDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLH 123
Query: 260 QFLES 264
FL+S
Sbjct: 124 LFLQS 128
>gi|23397574 sorting nexin 33 [Homo sapiens]
Length = 574
Score = 53.5 bits (127), Expect = 5e-07
Identities = 81/381 (21%), Positives = 142/381 (37%), Gaps = 76/381 (19%)
Query: 146 VSDPEKVGD--GMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGY 203
V DP K G+ +Y++Y++T + S V RR+ F L+++L K+ +
Sbjct: 234 VEDPTKQTKFKGIKSYISYKLTPTHAAS-------PVYRRYKHFDWLYNRLLHKFTVIS- 285
Query: 204 IVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLE 263
VP PEK G + +F+EKR+ L ++ HP L Q + FL
Sbjct: 286 -VPHLPEKQATGRFE----------EDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLS 334
Query: 264 SSE------LPRAVNTQALSGAGI------------LRMVNKAADAVNKMTIKMNESDAW 305
+ R + GA L+ V D + KM++S
Sbjct: 335 CLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDLQDVEDRVDTFKAFSKKMDDS--- 391
Query: 306 FEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAF--AKSAAMLGNSEDHTALSRA 363
Q + +L + HV RKE +AF + + AL+ A
Sbjct: 392 ----VLQLSTVASELVRKHVG-----GFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSA 442
Query: 364 LSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQIT 423
+S E I ++ EQ D + + LS Y L++ + + + K +++Q
Sbjct: 443 ISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQ-- 500
Query: 424 LLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERV 483
R ++ MV ++ D I+ R + ++ E+ F + R
Sbjct: 501 ----RMSDEGRMVQDEADGIR-----------------RRCRVVGFALQAEMNHFHQRRE 539
Query: 484 KDFKTVIIKYLESLVQTQQQL 504
DFK ++ YL + Q++
Sbjct: 540 LDFKHMMQNYLRQQILFYQRV 560
>gi|88703043 sorting nexin 6 isoform a [Homo sapiens]
Length = 290
Score = 49.7 bits (117), Expect = 7e-06
Identities = 54/264 (20%), Positives = 111/264 (42%), Gaps = 20/264 (7%)
Query: 233 EKRRAALERYLQRTVKHPTLLQDPDLRQFLE-SSELPRAVNTQALSGAGILRMVNKAADA 291
+K A E +L R HP L +D + FLE + +L + + + K+AD
Sbjct: 22 KKTVAMHEVFLCRVAAHPILRRDLNFHVFLEYNQDLSVRGKNKKEKLEDFFKNMVKSADG 81
Query: 292 VNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAML 351
V +K + D +FE ++ +++ + + K + + S L
Sbjct: 82 VIVSGVK--DVDDFFEHERTFLLEYHNRVKDASAKSDRMTRSHKSAADDYNRIGSSLYAL 139
Query: 352 GNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRM 411
G ++D T + + +++E+ +K ++ + + S+LL Y+R A K + R
Sbjct: 140 G-TQDSTDICKFFLKVSELFDKTRKIEARVSADEDLKLSDLLKYYLRESQAAKDLLYRRS 198
Query: 412 KCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTI 471
+ +E+A L DK + ++ + E Q + FE+IS++
Sbjct: 199 RSLVDYENANKAL----------------DKARAKNKDVLQAETSQQLCCQKFEKISESA 242
Query: 472 RKEVGRFEKERVKDFKTVIIKYLE 495
++E+ F+ RV F+ +++ E
Sbjct: 243 KQELIDFKTRRVAAFRKNLVELAE 266
>gi|23111023 sorting nexin 10 [Homo sapiens]
Length = 201
Score = 49.3 bits (116), Expect = 8e-06
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 12/124 (9%)
Query: 142 IEIGVSDPE-KVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLH 200
+ + V DP + D ++Y+ Y + T+ F+ V+RR+ +F+ L +L S L
Sbjct: 11 VSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALL 70
Query: 201 VGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQ 260
V +P P K++ + ++ + V++RR LE +L++ +++ LL D L
Sbjct: 71 VQ--LPELPSKNLFF---------NMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHL 119
Query: 261 FLES 264
FL+S
Sbjct: 120 FLQS 123
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 49.3 bits (116), Expect = 8e-06
Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 18/223 (8%)
Query: 285 VNKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAF 344
+ K +AV ++ + ++ E Q+ E L+ +L+ H +++ + +EL
Sbjct: 1034 LEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRD----- 1088
Query: 345 AKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFS---ELLSDYIRLIA 401
A L E +T + ++L E + +I+ QE D + EL ++
Sbjct: 1089 VLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTH 1148
Query: 402 AVKGVFDHRMKCWQKWEDAQITLLKKREAEAK---MMVANKPDKIQQAKNEIREWEAKVQ 458
+ +HR + QK + TL +K E E K + + DK+Q AK ++RE E +
Sbjct: 1149 LDMTIREHRGEMEQKIIKLEGTL-EKSELELKECNKQIESLNDKLQNAKEQLREKEFIML 1207
Query: 459 QGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQ 501
Q E++ Q+ K I + ++R+K+ ++V +K E + TQ
Sbjct: 1208 QNEQEISQLKKEIER-----TQQRMKEMESV-MKEQEQYIATQ 1244
Score = 33.1 bits (74), Expect = 0.63
Identities = 51/273 (18%), Positives = 104/273 (38%), Gaps = 35/273 (12%)
Query: 232 VEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKAADA 291
+E + L+ + L+Q+ L + SS+L + + + + + + A
Sbjct: 653 IEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMTKKCSQLLTLEKQLEEKIVA 712
Query: 292 VNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAML 351
+ + K E + EK ++ +L+ + H + AF K+ +
Sbjct: 713 YSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKI-------------CLAFEKAKKI- 758
Query: 352 GNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRM 411
+ E H + + + +L EK DQ +EQ S L D I
Sbjct: 759 -HLEQHKEMEKQIERLEAQLEKKDQQFKEQEKT----MSMLQQDII-------------- 799
Query: 412 KCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTI 471
C Q ++ LL + + E K K + ++ +N++ E KV+Q + E + +
Sbjct: 800 -CKQHHLESLDRLLTESKGEMKKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEEL 858
Query: 472 RKEVGRFEKERVKDFKTVIIKYLESLVQTQQQL 504
+ + E + K F+ + K E + Q++L
Sbjct: 859 VLHLNQLEGNKEK-FEKQLKKKSEEVYCLQKEL 890
>gi|157057545 sorting nexin 18 isoform a [Homo sapiens]
Length = 624
Score = 48.9 bits (115), Expect = 1e-05
Identities = 85/392 (21%), Positives = 140/392 (35%), Gaps = 86/392 (21%)
Query: 140 FDIEIGVSDPEKVGD--GMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASK 197
+ + + DP K GM +Y++Y++ + ++ V RR+ F L+++LA K
Sbjct: 274 YPFQCTIDDPTKQTKFKGMKSYISYKLVP-------THTQVPVHRRYKHFDWLYARLAEK 326
Query: 198 YLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPD 257
+ + VP PEK G + +F+ KRR L ++ HP L Q
Sbjct: 327 FPVIS--VPHLPEKQATGRFE----------EDFISKRRKGLIWWMNHMASHPVLAQCDV 374
Query: 258 LRQFL------------------ESSELPRAVNTQALS----GAGILRMVNKAADAVNKM 295
+ FL E E+ A LS A L+ V D
Sbjct: 375 FQHFLTCPSSTDEKAWKQGKRKAEKDEMVGANFFLTLSTPPAAALDLQEVESKIDGFKCF 434
Query: 296 TIKMNESDAWFEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAF--AKSAAMLGN 353
T KM++S +F + + +KE +F A L
Sbjct: 435 TKKMDDSALQLNHTANEFAR------------KQVTGFKKEYQKVGQSFRGLSQAFELDQ 482
Query: 354 SEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKC 413
L++A++ + + I +L EQ D +LL+ Y +A + +
Sbjct: 483 QAFSVGLNQAIAFTGDAYDAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQKGA 542
Query: 414 WQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRK 473
K +++ +R E M K D IQ N IS
Sbjct: 543 LTKVKES------RRHVEEGKMEVQKADGIQDRCN-----------------TISFATLA 579
Query: 474 EVGRFEKERVKDFKTVIIKYLESLVQTQQQLI 505
E+ F + RV+DFK+ + +L QQQ+I
Sbjct: 580 EIHHFHQIRVRDFKSQMQHFL------QQQII 605
>gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [Homo
sapiens]
Length = 464
Score = 48.5 bits (114), Expect = 1e-05
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 163 RVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVG 222
R T L +SE+ V RR+++F L++ L ++ + +P K I G
Sbjct: 30 RFTVYKVLVSVGRSEWFVFRRYAEFDKLYNTLKKQFPAMALKIPA---KRIFG------- 79
Query: 223 KEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLE 263
D+ +F+++RRA L ++Q V++P L PD+R FL+
Sbjct: 80 --DNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQ 118
>gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 48.5 bits (114), Expect = 1e-05
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 163 RVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVG 222
R T L +SE+ V RR+++F L++ L ++ + +P K I G
Sbjct: 30 RFTVYKVLVSVGRSEWFVFRRYAEFDKLYNTLKKQFPAMALKIPA---KRIFG------- 79
Query: 223 KEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLE 263
D+ +F+++RRA L ++Q V++P L PD+R FL+
Sbjct: 80 --DNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQ 118
>gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 48.5 bits (114), Expect = 1e-05
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 12/101 (11%)
Query: 163 RVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVG 222
R T L +SE+ V RR+++F L++ L ++ + +P K I G
Sbjct: 30 RFTVYKVLVSVGRSEWFVFRRYAEFDKLYNTLKKQFPAMALKIPA---KRIFG------- 79
Query: 223 KEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLE 263
D+ +F+++RRA L ++Q V++P L PD+R FL+
Sbjct: 80 --DNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQ 118
>gi|68800430 HCLS1 binding protein 3 [Homo sapiens]
Length = 392
Score = 48.1 bits (113), Expect = 2e-05
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 118 MSAPVIFDRSREEIEEEANGDIFDIEIGVSDPEKV-GDGMNAYMAYRVTTKTSLSMFSKS 176
M +P + SR ++ G +++ V ++V G M+ ++ Y++ T L+ F +
Sbjct: 1 MQSPAVLVTSRR-LQNAHTG----LDLTVPQHQEVRGKMMSGHVEYQILVVTRLAAFKSA 55
Query: 177 --------EFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSS 228
+F V +++S+ + KL+S+Y +PP P K + VG+ D
Sbjct: 56 KHRPEDVVQFLVSKKYSEIEEFYQKLSSRYAAAS--LPPLPRKVLF------VGESD--- 104
Query: 229 TEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQALSGAGILRMVNKA 288
+ +RRA L+ K L P+L +FL T++ AG+ +
Sbjct: 105 ---IRERRAVFNEILRCVSKDAELAGSPELLEFL---------GTRSPGAAGLTSRDSSV 152
Query: 289 ADAVNKMTIKMNESDAWFEEKQQQFE 314
D + T E+ +FEE+ Q E
Sbjct: 153 LDGTDSQTGNDEEAFDFFEEQDQVAE 178
>gi|221219020 NYD-SP11 protein [Homo sapiens]
Length = 2873
Score = 47.4 bits (111), Expect = 3e-05
Identities = 72/341 (21%), Positives = 136/341 (39%), Gaps = 48/341 (14%)
Query: 208 APEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSEL 267
A E+ + VK+ ++D + K E QR K L Q E+ +L
Sbjct: 1610 AQEERKLAQAYVKITQDDREMAQAEGKFAQKEETLAQRGEK---------LSQ--EAEKL 1658
Query: 268 PRAVNTQALSGAGILRMVNKAADAVNKMTIKMNESDAWFEEKQQQFENLD-------QQL 320
+ A + R K A K+ N EE Q+ +NLD Q+L
Sbjct: 1659 AQKRKKLAKKWEKVAREEEKLAKKGGKLAEVKNILAQKVEELPQREQNLDWQEKELAQEL 1718
Query: 321 RKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQ---- 376
+L +E L +EL+ + L E+ A R +L+E E K+ Q
Sbjct: 1719 EELEWDMEELSWKEEELNQEEGKLVEEKKKLAEEEEALAWQR--EKLSEEETKLAQEEEL 1776
Query: 377 -LHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWE-----------DAQITL 424
+ +++ A ++ + RL + + + +MK QK E + I
Sbjct: 1777 LIQEKEKLAQHK--EKMPEEEERLGRKREQLIEKKMKLAQKRERWINSMEELTKNKMILY 1834
Query: 425 LKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEK---- 480
KK A+ K +A + +K+ Q K + + ++ ++ Q ++ ++G F K
Sbjct: 1835 QKKNLAQEKKNLAQEKEKLAQRKENLLYNKERLTHSKKQLVQ----VKNKLGMFNKILAQ 1890
Query: 481 --ERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKAIA 519
E++ K +IK E L +T+++L++ ++ + + +A
Sbjct: 1891 VEEKLTQEKETVIKKKEKLAETEKKLVQVEDSLAKKQEKLA 1931
Score = 30.8 bits (68), Expect = 3.1
Identities = 22/99 (22%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 408 DHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQI 467
D ++K W++W+ +L + E + + ++ E E E +V + +R ++
Sbjct: 1513 DKKLK-WEEWKQVWENMLSSKSKEQQYKDEEEVTLEEEVSREGEEKEQQVTEEQRHIQEE 1571
Query: 468 SK--TIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQL 504
K I ++ R EK+R ++ + + + E L Q ++QL
Sbjct: 1572 HKWARIHRKRARAEKKRAQE-ERKLAQEEEKLAQEERQL 1609
>gi|157502171 sorting nexin 19 [Homo sapiens]
Length = 992
Score = 46.2 bits (108), Expect = 7e-05
Identities = 71/284 (25%), Positives = 114/284 (40%), Gaps = 56/284 (19%)
Query: 12 DGKPTDFEDLEDGEDLFTST---VSTLESSPS---SPEPASLPAEDISANSN----GPKP 61
DG+ ++ + E+G T T VSTL S P + D++A+ GP+
Sbjct: 415 DGEASEGAEAEEGPGTETETGLPVSTLNSCPEIHIDTADKEIEQGDVTASVTALLEGPEK 474
Query: 62 TEVVLDDDREDLFAEATEEVSLDSPEREPILSSEPSPAVTPVTPTTLIAPRIESKSMSAP 121
T L + T +VS P P+L S P P++ T + S P
Sbjct: 475 T---CPSRPSCLEKDLTNDVSSLDPTLPPVLLSSSPPG--PLSSATFSFEPLSSPD--GP 527
Query: 122 VIFDRSREEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEF--- 178
VI R I ++ E G G + Y Y V +T+L + S
Sbjct: 528 VIIQNLR-------------ITGTITAREHSGTGFHPYTLYTVKYETALDGENSSGLQQL 574
Query: 179 ---SVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTK----VKVGKEDSSSTEF 231
+V RR+ +FL L ++L K +I K++ G K + G DS +
Sbjct: 575 AYHTVNRRYREFLNLQTRLEEKPDLRKFI------KNVKGPKKLFPDLPFGNMDS---DR 625
Query: 232 VEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSELPRAVNTQA 275
VE R++ LE +L++ P + ++++FL A+NT A
Sbjct: 626 VEARKSLLESFLKQLCAIPEIANSEEVQEFL-------ALNTDA 662
>gi|154091028 sorting nexin 29 [Homo sapiens]
Length = 428
Score = 44.7 bits (104), Expect = 2e-04
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 20/106 (18%)
Query: 153 GDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV-GYIVPPAPEK 211
G NA+ Y+V + E+++ RR+++F LH KL +KY V Y PP
Sbjct: 284 GKAANAFHVYQVYIR-----IKDDEWNIYRRYTEFRSLHHKLQNKYPQVRAYNFPP---- 334
Query: 212 SIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPD 257
K +G +D+ +FVE+RR L+ YL R+V + + P+
Sbjct: 335 ------KKAIGNKDA---KFVEERRKQLQNYL-RSVMNKVIQMVPE 370
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,101,364
Number of Sequences: 37866
Number of extensions: 888300
Number of successful extensions: 4926
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 332
Number of HSP's that attempted gapping in prelim test: 4358
Number of HSP's gapped (non-prelim): 812
length of query: 519
length of database: 18,247,518
effective HSP length: 107
effective length of query: 412
effective length of database: 14,195,856
effective search space: 5848692672
effective search space used: 5848692672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.