Guide to the Human Genome
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Name: WDR65 Sequence: fasta or formatted (698aa) NCBI GI: 22749037
Description:

WD repeat domain 65

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         39           2
 C cysteine            2.1         15           1
 D aspartate           3.9         27           2
 E glutamate           5.9         41           2
 F phenylalanine       5.2         36           1
 G glycine             5.2         36           2
 H histidine           2.9         20           2
 I isoleucine          6.7         47           3
 K lysine              5.3         37           1
 L leucine             9.3         65           4
 M methionine          2.4         17           2
 N asparagine          4.2         29           2
 P proline             4.7         33           2
 Q glutamine           4.4         31           1
 R arginine            3.7         26           2
 S serine             11.2         78           2
 T threonine           6.0         42           3
 V valine              6.6         46           2
 W tryptophan          1.1          8           1
 Y tyrosine            3.6         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 65 
WDR52                 0.038   WD repeat domain 52 
EML6                  0.033   echinoderm microtubule associated protein like 6 [H...
EML4                  0.033   echinoderm microtubule associated protein like 4 is...
EML4                  0.033   echinoderm microtubule associated protein like 4 iso...
EML5                  0.029   echinoderm microtubule associated protein like 5 [Ho...
WDR69                 0.028   WD repeat domain 69 
EML2                  0.028   echinoderm microtubule associated protein like 2 [Hom...
WDR51B                0.025   WD repeat domain 51B 
EML3                  0.022   echinoderm microtubule associated protein like 3 [H...
TAF5L                 0.022   PCAF associated factor 65 beta isoform a 
TAF5                  0.021   TBP-associated factor 5 
KATNB1                0.021   katanin p80 subunit B 1 
WDR38                 0.021   WD repeat domain 38 
C10orf79              0.021   hypothetical protein LOC80217 
APAF1                 0.020   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.020   apoptotic peptidase activating factor 1 isoform a [Ho...
SPAG16                0.020   sperm associated antigen 16 isoform 1 
WDR88                 0.020   PQQ repeat and WD repeat domain containing 
GNB3                  0.020   guanine nucleotide-binding protein, beta-3 subunit [H...
EML1                  0.019   echinoderm microtubule associated protein like 1 iso...
EML1                  0.019   echinoderm microtubule associated protein like 1 iso...
GNB4                  0.018   guanine nucleotide-binding protein, beta-4 subunit [...
WDR66                 0.018   WD repeat domain 66 
SNRNP40               0.018   WD repeat domain 57 (U5 snRNP specific) 
PAFAH1B1              0.017   platelet-activating factor acetylhydrolase, isoform I...
GNB1                  0.017   guanine nucleotide-binding protein, beta-1 subunit [...
STRAP                 0.017   serine/threonine kinase receptor associated protein...
WDR5B                 0.017   WD repeat domain 5B 
GNB2L1                0.017   guanine nucleotide binding protein (G protein), beta ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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