Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C13orf26 Sequence: fasta or formatted (289aa) NCBI GI: 22748711
Description:

hypothetical protein LOC122046

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5         10           1
 C cysteine            1.7          5           1
 D aspartate           6.2         18           2
 E glutamate           3.8         11           1
 F phenylalanine       3.5         10           1
 G glycine             2.8          8           1
 H histidine           3.5         10           2
 I isoleucine          4.8         14           2
 K lysine              9.7         28           4
 L leucine             9.7         28           2
 M methionine          1.4          4           1
 N asparagine          4.2         12           1
 P proline             6.9         20           2
 Q glutamine           6.6         19           2
 R arginine            4.8         14           2
 S serine             10.0         29           2
 T threonine           8.0         23           2
 V valine              2.4          7           1
 W tryptophan          1.7          5           1
 Y tyrosine            4.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC122046 
PLD1                  0.014   phospholipase D1 isoform b 
PLD1                  0.014   phospholipase D1 isoform a 
C12orf35              0.010   hypothetical protein LOC55196 
SGK196                0.009   protein kinase-like protein SgK196 
NOC2L                 0.009   nucleolar complex associated 2 homolog 
C14orf169             0.009   chromosome 14 open reading frame 169 
LOC284297             0.005   hypothetical protein LOC284297 
EFCAB8                0.005   EF-hand calcium binding domain 8 
DNAH14                0.005   dynein, axonemal, heavy polypeptide 14 isoform 1 [H...
DNAH14                0.005   dynein, axonemal, heavy polypeptide 14 isoform 2 [H...
C10orf118             0.005   CTCL tumor antigen L14-2 
FAM83A                0.005   hypothetical protein LOC84985 isoform b 
FAM83A                0.005   hypothetical protein LOC84985 isoform a 
CRYGN                 0.005   gammaN-crystallin 
ANKRD56               0.005   ankyrin repeat domain 56 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press