Guide to the Human Genome
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Name: TTC19 Sequence: fasta or formatted (501aa) NCBI GI: 22547159
Description:

tetratricopeptide repeat domain 19

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         65           3
 C cysteine            1.4          7           1
 D aspartate           4.0         20           1
 E glutamate           8.4         42           4
 F phenylalanine       2.0         10           1
 G glycine             6.6         33           3
 H histidine           2.0         10           1
 I isoleucine          4.4         22           2
 K lysine              4.2         21           2
 L leucine            11.0         55           3
 M methionine          2.6         13           1
 N asparagine          2.0         10           1
 P proline             6.8         34           4
 Q glutamine           5.4         27           2
 R arginine           10.4         52           3
 S serine              5.8         29           1
 T threonine           3.2         16           2
 V valine              3.4         17           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.8         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 19 
KLC1                  0.032   kinesin light chain 1 isoform 3 
KLC1                  0.032   kinesin light chain 1 isoform 2 
KLC1                  0.032   kinesin light chain 1 isoform 1 
KLC2                  0.032   kinesin light chain 2 isoform 1 
KLC2                  0.032   kinesin light chain 2 isoform 1 
KLC2                  0.032   kinesin light chain 2 isoform 2 
KLC2                  0.032   kinesin light chain 2 isoform 1 
KLC3                  0.030   kinesin light chain 3 
KLC4                  0.030   kinesin-like 8 isoform b 
KLC4                  0.030   kinesin-like 8 isoform a 
KLC4                  0.030   kinesin-like 8 isoform a 
NPHP3                 0.028   nephrocystin 3 
BSN                   0.018   bassoon protein 
TMTC1                 0.018   transmembrane and tetratricopeptide repeat containin...
WASL                  0.018   Wiskott-Aldrich syndrome gene-like protein 
LOC100130360          0.017   PREDICTED: hypothetical protein 
LOC284801             0.015   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.015   PREDICTED: hypothetical protein LOC284801 
LOC284801             0.015   PREDICTED: hypothetical protein LOC284801 
KIAA0664              0.015   hypothetical protein LOC23277 
WIPF1                 0.014   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.014   WAS/WASL interacting protein family, member 1 
TPM3                  0.014   tropomyosin 3 isoform 4 
USP51                 0.014   ubiquitin specific protease 51 
SMC4                  0.014   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.014   SMC4 structural maintenance of chromosomes 4-like 1 ...
SRRM2                 0.014   splicing coactivator subunit SRm300 
WIPF2                 0.014   WIRE protein 
LOC100131225          0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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