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Search of human proteins with 224994162
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224994162 mitochondrial fission regulator 1 isoform 2 [Homo
sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224994162 mitochondrial fission regulator 1 isoform 2 [Homo s... 595 e-170
gi|224994160 mitochondrial fission regulator 1 isoform 1 [Homo s... 578 e-165
gi|224994164 mitochondrial fission regulator 1 isoform 3 [Homo s... 534 e-152
gi|149999350 DUF729 domain containing 1 [Homo sapiens] 102 3e-22
gi|39653315 DUF729 domain containing 1 [Homo sapiens] 102 3e-22
gi|153251766 hypothetical protein LOC56181 isoform a [Homo sapiens] 62 6e-10
gi|153251748 hypothetical protein LOC56181 isoform a [Homo sapiens] 62 6e-10
gi|153251745 hypothetical protein LOC56181 isoform a [Homo sapiens] 62 6e-10
gi|153251771 hypothetical protein LOC56181 isoform b [Homo sapiens] 49 5e-06
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 47 2e-05
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 45 1e-04
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 45 1e-04
gi|150378503 leiomodin 2 (cardiac) [Homo sapiens] 44 2e-04
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 43 4e-04
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 43 4e-04
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 43 4e-04
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 43 4e-04
gi|187761324 shootin1 isoform a [Homo sapiens] 42 9e-04
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 42 9e-04
gi|195947369 junction-mediating and regulatory protein [Homo sap... 41 0.001
gi|119120861 formin-like 3 isoform 2 [Homo sapiens] 41 0.001
gi|119120874 formin-like 3 isoform 1 [Homo sapiens] 41 0.001
gi|13699803 WAS protein family, member 3 [Homo sapiens] 40 0.002
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 40 0.002
gi|120587019 zinc finger protein 318 [Homo sapiens] 40 0.003
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 40 0.003
gi|19923391 homeobox D3 [Homo sapiens] 40 0.003
gi|50511340 shootin1 isoform b [Homo sapiens] 40 0.003
gi|146134388 YLP motif containing 1 [Homo sapiens] 40 0.003
gi|157277988 phosphodiesterase 4D isoform 1 [Homo sapiens] 39 0.004
>gi|224994162 mitochondrial fission regulator 1 isoform 2 [Homo
sapiens]
Length = 300
Score = 595 bits (1535), Expect = e-170
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MLGWIKRLIRMVFQQVGVSMQSINSHATEWSPSHPGEDAVASFADVGWVAKEEGECSARL 60
MLGWIKRLIRMVFQQVGVSMQSINSHATEWSPSHPGEDAVASFADVGWVAKEEGECSARL
Sbjct: 1 MLGWIKRLIRMVFQQVGVSMQSINSHATEWSPSHPGEDAVASFADVGWVAKEEGECSARL 60
Query: 61 RTEVRSRPPLQDDLLFFEKAPSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAA 120
RTEVRSRPPLQDDLLFFEKAPSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAA
Sbjct: 61 RTEVRSRPPLQDDLLFFEKAPSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAA 120
Query: 121 LRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKE 180
LRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKE
Sbjct: 121 LRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKE 180
Query: 181 RREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAAL 240
RREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAAL
Sbjct: 181 RREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAAL 240
Query: 241 IAEALKKKFAYRYRSDSQDEVEKGIPKSESEATSERVLFGPHMLKPTGKMKALIENVSDS 300
IAEALKKKFAYRYRSDSQDEVEKGIPKSESEATSERVLFGPHMLKPTGKMKALIENVSDS
Sbjct: 241 IAEALKKKFAYRYRSDSQDEVEKGIPKSESEATSERVLFGPHMLKPTGKMKALIENVSDS 300
>gi|224994160 mitochondrial fission regulator 1 isoform 1 [Homo
sapiens]
Length = 333
Score = 578 bits (1491), Expect = e-165
Identities = 300/333 (90%), Positives = 300/333 (90%), Gaps = 33/333 (9%)
Query: 1 MLGWIKRLIRMVFQQVGVSMQS---------------------------------INSHA 27
MLGWIKRLIRMVFQQVGVSMQS INSHA
Sbjct: 1 MLGWIKRLIRMVFQQVGVSMQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQINSHA 60
Query: 28 TEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISL 87
TEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISL
Sbjct: 61 TEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISL 120
Query: 88 PDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTF 147
PDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTF
Sbjct: 121 PDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTF 180
Query: 148 GTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLE 207
GTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLE
Sbjct: 181 GTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLE 240
Query: 208 ILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPK 267
ILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPK
Sbjct: 241 ILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPK 300
Query: 268 SESEATSERVLFGPHMLKPTGKMKALIENVSDS 300
SESEATSERVLFGPHMLKPTGKMKALIENVSDS
Sbjct: 301 SESEATSERVLFGPHMLKPTGKMKALIENVSDS 333
>gi|224994164 mitochondrial fission regulator 1 isoform 3 [Homo
sapiens]
Length = 348
Score = 534 bits (1376), Expect = e-152
Identities = 278/311 (89%), Positives = 278/311 (89%), Gaps = 33/311 (10%)
Query: 1 MLGWIKRLIRMVFQQVGVSMQS---------------------------------INSHA 27
MLGWIKRLIRMVFQQVGVSMQS INSHA
Sbjct: 1 MLGWIKRLIRMVFQQVGVSMQSVLWSRKPYGSSRSIVRKIGTNLSLIQCPRVQFQINSHA 60
Query: 28 TEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISL 87
TEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISL
Sbjct: 61 TEWSPSHPGEDAVASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISL 120
Query: 88 PDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTF 147
PDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTF
Sbjct: 121 PDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTF 180
Query: 148 GTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLE 207
GTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLE
Sbjct: 181 GTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLE 240
Query: 208 ILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPK 267
ILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPK
Sbjct: 241 ILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPK 300
Query: 268 SESEATSERVL 278
SESEATSERVL
Sbjct: 301 SESEATSERVL 311
>gi|149999350 DUF729 domain containing 1 [Homo sapiens]
Length = 385
Score = 102 bits (255), Expect = 3e-22
Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 45/291 (15%)
Query: 40 VASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISLPDLSQEEPQLKT 99
V SFAD+ +VA +E R R + + ++ F R P + Q+E +K
Sbjct: 73 VPSFADILYVANDEEASYLRFRNSIWKNEEEKVEI-FHPLRLVRDPLSPAVRQKET-VKN 130
Query: 100 PALANEEALQKICALENELAALRAQIAKIVTQQEQQN-------------LTAGDLDSTT 146
NE A++KI ALENEL LR+QIA IV QE +N ++ G L S+
Sbjct: 131 DLPVNEAAIRKIAALENELTFLRSQIAAIVEMQELKNSTNSSSFGLSDERISLGQLSSSR 190
Query: 147 FGTIPPHP---------PPPPPPLP-------PPAL-----GLHQSTSAVDLIKERREKR 185
+ P PPPPPPLP PP G + + + E ++
Sbjct: 191 AAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCFPPVQPGSNNICDSDNPATEMSKQN 250
Query: 186 ANAGKTLVKNNPK---KPEMPNMLEILKEMNSVKLRSVKRSEQ----DVKPKPVDATDPA 238
A KT ++ K ++PNML++LK+MN VKLR+++RS + + DP
Sbjct: 251 PAANKTNYSHHSKSQRNKDIPNMLDVLKDMNKVKLRAIERSPGGRPIHKRKRQNSHWDPV 310
Query: 239 ALIAEALKKKFAYRYRSDSQDEVEKGIPKSESEATSERVLFGPHMLKPTGK 289
+LI+ ALK+KFA ++ D E E +S ++ E FG H+ + G+
Sbjct: 311 SLISHALKQKFA--FQEDDSFEKENRSWESSPFSSPETSRFGHHISQSEGQ 359
>gi|39653315 DUF729 domain containing 1 [Homo sapiens]
Length = 385
Score = 102 bits (255), Expect = 3e-22
Identities = 90/291 (30%), Positives = 136/291 (46%), Gaps = 45/291 (15%)
Query: 40 VASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAPSRQISLPDLSQEEPQLKT 99
V SFAD+ +VA +E R R + + ++ F R P + Q+E +K
Sbjct: 73 VPSFADILYVANDEEASYLRFRNSIWKNEEEKVEI-FHPLRLVRDPLSPAVRQKET-VKN 130
Query: 100 PALANEEALQKICALENELAALRAQIAKIVTQQEQQN-------------LTAGDLDSTT 146
NE A++KI ALENEL LR+QIA IV QE +N ++ G L S+
Sbjct: 131 DLPVNEAAIRKIAALENELTFLRSQIAAIVEMQELKNSTNSSSFGLSDERISLGQLSSSR 190
Query: 147 FGTIPPHP---------PPPPPPLP-------PPAL-----GLHQSTSAVDLIKERREKR 185
+ P PPPPPPLP PP G + + + E ++
Sbjct: 191 AAHLSVDPDQLPGSVLSPPPPPPLPPQFSSLQPPCFPPVQPGSNNICDSDNPATEMSKQN 250
Query: 186 ANAGKTLVKNNPK---KPEMPNMLEILKEMNSVKLRSVKRSEQ----DVKPKPVDATDPA 238
A KT ++ K ++PNML++LK+MN VKLR+++RS + + DP
Sbjct: 251 PAANKTNYSHHSKSQRNKDIPNMLDVLKDMNKVKLRAIERSPGGRPIHKRKRQNSHWDPV 310
Query: 239 ALIAEALKKKFAYRYRSDSQDEVEKGIPKSESEATSERVLFGPHMLKPTGK 289
+LI+ ALK+KFA ++ D E E +S ++ E FG H+ + G+
Sbjct: 311 SLISHALKQKFA--FQEDDSFEKENRSWESSPFSSPETSRFGHHISQSEGQ 359
>gi|153251766 hypothetical protein LOC56181 isoform a [Homo sapiens]
Length = 292
Score = 62.0 bits (149), Expect = 6e-10
Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 56/247 (22%)
Query: 40 VASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAP----SRQISLPDLSQEEP 95
V + AD+ W+A +E E AR+R++ R PL+ ++ +P R S+P+L E
Sbjct: 59 VPTLADIAWIAADEEETYARVRSDTR---PLRHT---WKPSPLIVMQRNASVPNLRGSEE 112
Query: 96 QL---KTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPP 152
+L K PAL AL + L++EL+ LR+QIAKIV S T + P
Sbjct: 113 RLLALKKPALP---ALSRTTELQDELSHLRSQIAKIVAADAAS-------ASLTPDFLSP 162
Query: 153 HPPPPPPPLPPPALGLHQSTSAV--DLIKERREK--RANAGKTLVKNNPK--KPE----- 201
PLP H +TS V D+ +E + + L +P+ KPE
Sbjct: 163 GSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEHKAAC 222
Query: 202 ----------------MPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEAL 245
+M+ ILK+ + +K QD+ + DPA LI+E L
Sbjct: 223 SSSEEDDCVSLSKASSFADMMGILKDFHRMK------QSQDLNRSLLKEEDPAVLISEVL 276
Query: 246 KKKFAYR 252
++KFA +
Sbjct: 277 RRKFALK 283
>gi|153251748 hypothetical protein LOC56181 isoform a [Homo sapiens]
Length = 292
Score = 62.0 bits (149), Expect = 6e-10
Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 56/247 (22%)
Query: 40 VASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAP----SRQISLPDLSQEEP 95
V + AD+ W+A +E E AR+R++ R PL+ ++ +P R S+P+L E
Sbjct: 59 VPTLADIAWIAADEEETYARVRSDTR---PLRHT---WKPSPLIVMQRNASVPNLRGSEE 112
Query: 96 QL---KTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPP 152
+L K PAL AL + L++EL+ LR+QIAKIV S T + P
Sbjct: 113 RLLALKKPALP---ALSRTTELQDELSHLRSQIAKIVAADAAS-------ASLTPDFLSP 162
Query: 153 HPPPPPPPLPPPALGLHQSTSAV--DLIKERREK--RANAGKTLVKNNPK--KPE----- 201
PLP H +TS V D+ +E + + L +P+ KPE
Sbjct: 163 GSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEHKAAC 222
Query: 202 ----------------MPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEAL 245
+M+ ILK+ + +K QD+ + DPA LI+E L
Sbjct: 223 SSSEEDDCVSLSKASSFADMMGILKDFHRMK------QSQDLNRSLLKEEDPAVLISEVL 276
Query: 246 KKKFAYR 252
++KFA +
Sbjct: 277 RRKFALK 283
>gi|153251745 hypothetical protein LOC56181 isoform a [Homo sapiens]
Length = 292
Score = 62.0 bits (149), Expect = 6e-10
Identities = 71/247 (28%), Positives = 109/247 (44%), Gaps = 56/247 (22%)
Query: 40 VASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAP----SRQISLPDLSQEEP 95
V + AD+ W+A +E E AR+R++ R PL+ ++ +P R S+P+L E
Sbjct: 59 VPTLADIAWIAADEEETYARVRSDTR---PLRHT---WKPSPLIVMQRNASVPNLRGSEE 112
Query: 96 QL---KTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPP 152
+L K PAL AL + L++EL+ LR+QIAKIV S T + P
Sbjct: 113 RLLALKKPALP---ALSRTTELQDELSHLRSQIAKIVAADAAS-------ASLTPDFLSP 162
Query: 153 HPPPPPPPLPPPALGLHQSTSAV--DLIKERREK--RANAGKTLVKNNPK--KPE----- 201
PLP H +TS V D+ +E + + L +P+ KPE
Sbjct: 163 GSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEHKAAC 222
Query: 202 ----------------MPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEAL 245
+M+ ILK+ + +K QD+ + DPA LI+E L
Sbjct: 223 SSSEEDDCVSLSKASSFADMMGILKDFHRMK------QSQDLNRSLLKEEDPAVLISEVL 276
Query: 246 KKKFAYR 252
++KFA +
Sbjct: 277 RRKFALK 283
>gi|153251771 hypothetical protein LOC56181 isoform b [Homo sapiens]
Length = 205
Score = 48.9 bits (115), Expect = 5e-06
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 16/97 (16%)
Query: 40 VASFADVGWVAKEEGECSARLRTEVRSRPPLQDDLLFFEKAP----SRQISLPDLSQEEP 95
V + AD+ W+A +E E AR+R++ R PL+ ++ +P R S+P+L E
Sbjct: 59 VPTLADIAWIAADEEETYARVRSDTR---PLRHT---WKPSPLIVMQRNASVPNLRGSEE 112
Query: 96 QL---KTPALANEEALQKICALENELAALRAQIAKIV 129
+L K PAL AL + L++EL+ LR+QIAKIV
Sbjct: 113 RLLALKKPALP---ALSRTTELQDELSHLRSQIAKIV 146
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 47.4 bits (111), Expect = 2e-05
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 151 PPHPPPPPPPLPPPALGL-----HQ-STSAVDLIKERREKRANAGKTLVKNNPKKPEMPN 204
PP PPPPPPP PPP GL HQ T+A + + R A V+ N +
Sbjct: 374 PPPPPPPPPPGPPPPPGLPSDGDHQVPTTAGNKAALLDQIREGAQLKKVEQNSRPVSCSG 433
Query: 205 MLEILKEM-NSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDE 260
+L ++ ++L+SV ++ P P + + E ++K+ + SD ++
Sbjct: 434 RDALLDQIRQGIQLKSVADGQESTPPTPAPTSGIVGALMEVMQKRSKAIHSSDEDED 490
Score = 29.3 bits (64), Expect = 4.4
Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 4/18 (22%)
Query: 151 PPHPPP----PPPPLPPP 164
PP PPP PPPP PPP
Sbjct: 277 PPPPPPSRGGPPPPPPPP 294
Score = 29.3 bits (64), Expect = 4.4
Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 151 PPHPPPPP---PPLPPPALG 167
PP PPPPP P PPPA G
Sbjct: 287 PPPPPPPPHNSGPPPPPARG 306
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 44.7 bits (104), Expect = 1e-04
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 88 PDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTF 147
P + E +L P L+ EE +Q + ++ E+ + QI+K+ +Q+Q A
Sbjct: 153 PPHTDPELELVPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAK------ 206
Query: 148 GTIPPHPPPPPPPL-PPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMP 203
PP P P+ PPP H+ S V +I + K+A A +++ + E+P
Sbjct: 207 ------PPEPEKPVSPPPIESKHR--SLVQIIYDENRKKAEAAHRILEGLGPQVELP 255
Score = 29.6 bits (65), Expect = 3.4
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 21/203 (10%)
Query: 80 APSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTA 139
A S + + P + ++E + NEE + + ++ I T+ +
Sbjct: 689 AASEEAAFPPVVEDEEMEASGVSGNEEEMVEEAEATVNNSSDTESIPSPHTEAAKDTGQN 748
Query: 140 GDLDSTTFGTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKK 199
G T G PPP PP PPP + E G P
Sbjct: 749 GPKPPATLGA---DGPPPGPPTPPP--------EDIPAPTEPTPASEATGAPTPPPAPPS 797
Query: 200 PEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQD 259
P P + + KE + + E+ + KP A + A +A + +S+ +
Sbjct: 798 PSAPPPV-VPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEP-----VKSECTE 851
Query: 260 EVEKGIPKSE----SEATSERVL 278
E E+G K + +EAT+E L
Sbjct: 852 EAEEGPAKGKDAEAAEATAEGAL 874
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 44.7 bits (104), Expect = 1e-04
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 88 PDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLTAGDLDSTTF 147
P + E +L P L+ EE +Q + ++ E+ + QI+K+ +Q+Q A
Sbjct: 153 PPHTDPELELVPPRLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEAAK------ 206
Query: 148 GTIPPHPPPPPPPL-PPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMP 203
PP P P+ PPP H+ S V +I + K+A A +++ + E+P
Sbjct: 207 ------PPEPEKPVSPPPIESKHR--SLVQIIYDENRKKAEAAHRILEGLGPQVELP 255
Score = 33.1 bits (74), Expect = 0.31
Identities = 42/169 (24%), Positives = 62/169 (36%), Gaps = 35/169 (20%)
Query: 144 STTFGTIPPHPPPPPPPLPPPAL---GLHQSTSAVDLIKERREKRANAGKTLVKNNPKKP 200
S G P P PP P PPP + + T+A ++E E++ A + L + K
Sbjct: 800 SEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAE 859
Query: 201 EMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSD---- 256
E P E +E E K K +A + A A +KK R+
Sbjct: 860 E-PVKSECTEE----------AEEGPAKGKDAEAAEATAEGALKAEKKEGGSGRATTAKS 908
Query: 257 -------------SQDEVEKGIPKSESEATSERVLFGPHMLKPTGKMKA 292
S DEV++ ++ S R P +L PTG +A
Sbjct: 909 SGAPQDSDSSATCSADEVDEAEGGDKNRLLSPR----PSLLTPTGDPRA 953
>gi|150378503 leiomodin 2 (cardiac) [Homo sapiens]
Length = 547
Score = 43.5 bits (101), Expect = 2e-04
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 150 IPPHPPPPPPPLPPPALGLHQSTSAVDLIKERRE-KRANAGKTLVKNNPKKPEMPNMLEI 208
+PP PPPPPPPLP L + + ++IK++ +RA K K + PN I
Sbjct: 438 LPPPPPPPPPPLPEKKL---ITRNIAEVIKQQESAQRALQNGQKKKKGKKVKKQPN--SI 492
Query: 209 LKEMNSVKLRSVKRSEQDVKPKP 231
LKE+ + LRSV+ + + +P
Sbjct: 493 LKEIKN-SLRSVQEKKMEDSSRP 514
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 34/135 (25%)
Query: 154 PPPPPPPLPPPAL----------------GLHQSTSAVDLIKERREKRANAGKTLVKNNP 197
PPPPPPPLPPP + GLH + S + + + + P
Sbjct: 425 PPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEP 484
Query: 198 KKPEMPNMLEILKEMNSVKLRSVKRS----------EQDVKPKPVDATDPAALIAEALKK 247
K+ P+ L ++ + SV L ++++ EQ+ K + ++ +A L +
Sbjct: 485 KR--HPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIEND-----VATILSR 537
Query: 248 KFAYRYRSDSQDEVE 262
+ A Y SDS+D+ E
Sbjct: 538 RIAVEY-SDSEDDSE 551
Score = 37.0 bits (84), Expect = 0.021
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 123 AQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPL-------PPPALGLHQSTSAV 175
+Q+++++T+ E++ L + PH PPPPPP+ P P +SA
Sbjct: 258 SQMSELLTRAEERVL------------VRPHEPPPPPPMHGAGDAKPIPTC----ISSAT 301
Query: 176 DLIKERREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDAT 235
LI+ R + A G+T V +P P P L +++ S++ S P PV
Sbjct: 302 GLIENRPQSPA-TGRTPVFVSPTPPPPPPPLP-----SALSTSSLRASMTSTPPPPVPPP 355
Query: 236 DP 237
P
Sbjct: 356 PP 357
Score = 29.6 bits (65), Expect = 3.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 154 PPPPPPPLPPPALGL 168
PPP PPP PPPA L
Sbjct: 349 PPPVPPPPPPPATAL 363
Score = 28.5 bits (62), Expect = 7.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 137 LTAGDLDSTTFGTIPPHPPPPPPP---------LPPP 164
L+ L ++ T PP PPPPPP +PPP
Sbjct: 335 LSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPP 371
Score = 28.5 bits (62), Expect = 7.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 151 PPHPPPPPPPLPPPAL 166
PP P PPPPP P AL
Sbjct: 348 PPPPVPPPPPPPATAL 363
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 34/135 (25%)
Query: 154 PPPPPPPLPPPAL----------------GLHQSTSAVDLIKERREKRANAGKTLVKNNP 197
PPPPPPPLPPP + GLH + S + + + + P
Sbjct: 425 PPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEP 484
Query: 198 KKPEMPNMLEILKEMNSVKLRSVKRS----------EQDVKPKPVDATDPAALIAEALKK 247
K+ P+ L ++ + SV L ++++ EQ+ K + ++ +A L +
Sbjct: 485 KR--HPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIEND-----VATILSR 537
Query: 248 KFAYRYRSDSQDEVE 262
+ A Y SDS+D+ E
Sbjct: 538 RIAVEY-SDSEDDSE 551
Score = 37.0 bits (84), Expect = 0.021
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 123 AQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPL-------PPPALGLHQSTSAV 175
+Q+++++T+ E++ L + PH PPPPPP+ P P +SA
Sbjct: 258 SQMSELLTRAEERVL------------VRPHEPPPPPPMHGAGDAKPIPTC----ISSAT 301
Query: 176 DLIKERREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDAT 235
LI+ R + A G+T V +P P P L +++ S++ S P PV
Sbjct: 302 GLIENRPQSPA-TGRTPVFVSPTPPPPPPPLP-----SALSTSSLRASMTSTPPPPVPPP 355
Query: 236 DP 237
P
Sbjct: 356 PP 357
Score = 29.6 bits (65), Expect = 3.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 154 PPPPPPPLPPPALGL 168
PPP PPP PPPA L
Sbjct: 349 PPPVPPPPPPPATAL 363
Score = 28.5 bits (62), Expect = 7.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 137 LTAGDLDSTTFGTIPPHPPPPPPP---------LPPP 164
L+ L ++ T PP PPPPPP +PPP
Sbjct: 335 LSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPP 371
Score = 28.5 bits (62), Expect = 7.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 151 PPHPPPPPPPLPPPAL 166
PP P PPPPP P AL
Sbjct: 348 PPPPVPPPPPPPATAL 363
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 34/135 (25%)
Query: 154 PPPPPPPLPPPAL----------------GLHQSTSAVDLIKERREKRANAGKTLVKNNP 197
PPPPPPPLPPP + GLH + S + + + + P
Sbjct: 425 PPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEP 484
Query: 198 KKPEMPNMLEILKEMNSVKLRSVKRS----------EQDVKPKPVDATDPAALIAEALKK 247
K+ P+ L ++ + SV L ++++ EQ+ K + ++ +A L +
Sbjct: 485 KR--HPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIEND-----VATILSR 537
Query: 248 KFAYRYRSDSQDEVE 262
+ A Y SDS+D+ E
Sbjct: 538 RIAVEY-SDSEDDSE 551
Score = 37.0 bits (84), Expect = 0.021
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 123 AQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPL-------PPPALGLHQSTSAV 175
+Q+++++T+ E++ L + PH PPPPPP+ P P +SA
Sbjct: 258 SQMSELLTRAEERVL------------VRPHEPPPPPPMHGAGDAKPIPTC----ISSAT 301
Query: 176 DLIKERREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDAT 235
LI+ R + A G+T V +P P P L +++ S++ S P PV
Sbjct: 302 GLIENRPQSPA-TGRTPVFVSPTPPPPPPPLP-----SALSTSSLRASMTSTPPPPVPPP 355
Query: 236 DP 237
P
Sbjct: 356 PP 357
Score = 29.6 bits (65), Expect = 3.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 154 PPPPPPPLPPPALGL 168
PPP PPP PPPA L
Sbjct: 349 PPPVPPPPPPPATAL 363
Score = 28.5 bits (62), Expect = 7.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 137 LTAGDLDSTTFGTIPPHPPPPPPP---------LPPP 164
L+ L ++ T PP PPPPPP +PPP
Sbjct: 335 LSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPP 371
Score = 28.5 bits (62), Expect = 7.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 151 PPHPPPPPPPLPPPAL 166
PP P PPPPP P AL
Sbjct: 348 PPPPVPPPPPPPATAL 363
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 42.7 bits (99), Expect = 4e-04
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 34/135 (25%)
Query: 154 PPPPPPPLPPPAL----------------GLHQSTSAVDLIKERREKRANAGKTLVKNNP 197
PPPPPPPLPPP + GLH + S + + + + P
Sbjct: 425 PPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPLMPPSPPSQVIPASEP 484
Query: 198 KKPEMPNMLEILKEMNSVKLRSVKRS----------EQDVKPKPVDATDPAALIAEALKK 247
K+ P+ L ++ + SV L ++++ EQ+ K + ++ +A L +
Sbjct: 485 KR--HPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIEND-----VATILSR 537
Query: 248 KFAYRYRSDSQDEVE 262
+ A Y SDS+D+ E
Sbjct: 538 RIAVEY-SDSEDDSE 551
Score = 37.0 bits (84), Expect = 0.021
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 29/122 (23%)
Query: 123 AQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPL-------PPPALGLHQSTSAV 175
+Q+++++T+ E++ L + PH PPPPPP+ P P +SA
Sbjct: 258 SQMSELLTRAEERVL------------VRPHEPPPPPPMHGAGDAKPIPTC----ISSAT 301
Query: 176 DLIKERREKRANAGKTLVKNNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDAT 235
LI+ R + A G+T V +P P P L +++ S++ S P PV
Sbjct: 302 GLIENRPQSPA-TGRTPVFVSPTPPPPPPPLP-----SALSTSSLRASMTSTPPPPVPPP 355
Query: 236 DP 237
P
Sbjct: 356 PP 357
Score = 29.6 bits (65), Expect = 3.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 154 PPPPPPPLPPPALGL 168
PPP PPP PPPA L
Sbjct: 349 PPPVPPPPPPPATAL 363
Score = 28.5 bits (62), Expect = 7.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 137 LTAGDLDSTTFGTIPPHPPPPPPP---------LPPP 164
L+ L ++ T PP PPPPPP +PPP
Sbjct: 335 LSTSSLRASMTSTPPPPVPPPPPPPATALQAPAVPPP 371
Score = 28.5 bits (62), Expect = 7.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 151 PPHPPPPPPPLPPPAL 166
PP P PPPPP P AL
Sbjct: 348 PPPPVPPPPPPPATAL 363
>gi|187761324 shootin1 isoform a [Homo sapiens]
Length = 631
Score = 41.6 bits (96), Expect = 9e-04
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 149 TIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLEI 208
++PP PPPPPPPLPPP + S + +I++R + K K +PE +
Sbjct: 351 SVPP-PPPPPPPLPPPP--PNPIRSLMSMIRKRSHPSGSGAK---KEKATQPETTEEVTD 404
Query: 209 LKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPKS 268
LK ++ + R ++ V +PV+ T A K + + + DE+ KGI +
Sbjct: 405 LKRQAVEEM--MDRIKKGVHLRPVNQT------ARPKTKPESSKGCESAVDEL-KGILGT 455
Query: 269 ESEATSERVL 278
+++TS R L
Sbjct: 456 LNKSTSSRSL 465
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 41.6 bits (96), Expect = 9e-04
Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 6/131 (4%)
Query: 151 PPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLEILK 210
PP PPPPPPPLPPP+ G + L RE+ A G L +P +P P +
Sbjct: 22 PPPPPPPPPPLPPPSGGPELEGDGLLL----RERLAALG--LDDPSPAEPGAPALRAPAA 75
Query: 211 EMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPKSES 270
R+ + S ++ P AA + ++ D E+ + ++E
Sbjct: 76 AAQGQARRAAELSPEERAPPGRPGAPEAAELELEEDEEEGEEAELDGDLLEEEELEEAEE 135
Query: 271 EATSERVLFGP 281
E S +L P
Sbjct: 136 EDRSSLLLLSP 146
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 151 PPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPN 204
PP PPPPPPP PPP L + + + L K+ K N K PK P+
Sbjct: 811 PPPPPPPPPPPPPPPLPVAKDSGPETLEKDLPRKEGNE-----KRIPKSASAPS 859
>gi|119120861 formin-like 3 isoform 2 [Homo sapiens]
Length = 976
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 105 EEALQKICALENELAALRA----QIAKIVTQQEQQNLTAGDLDSTTFGTIP----PHPPP 156
EEA Q+ C LE + L + +A++ + + + DLD P P PPP
Sbjct: 411 EEAFQRRCHLEPNVRGLESVDSEALARVGPAELSEGMPPSDLDLLAPAPPPEEVLPLPPP 470
Query: 157 PPPPLPPP 164
P PPLPPP
Sbjct: 471 PAPPLPPP 478
>gi|119120874 formin-like 3 isoform 1 [Homo sapiens]
Length = 1027
Score = 41.2 bits (95), Expect = 0.001
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 105 EEALQKICALENELAALRA----QIAKIVTQQEQQNLTAGDLDSTTFGTIP----PHPPP 156
EEA Q+ C LE + L + +A++ + + + DLD P P PPP
Sbjct: 462 EEAFQRRCHLEPNVRGLESVDSEALARVGPAELSEGMPPSDLDLLAPAPPPEEVLPLPPP 521
Query: 157 PPPPLPPP 164
P PPLPPP
Sbjct: 522 PAPPLPPP 529
>gi|13699803 WAS protein family, member 3 [Homo sapiens]
Length = 502
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 149 TIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLEI 208
T PP P PPPPP PP G S+S + G + + ++P P + +
Sbjct: 393 TAPPPPGPPPPPPGPPGPGSSLSSSPMH------------GPPVAEAKRQEPAQPPISDA 440
Query: 209 LKEM-----NSVKLRSV-KRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVE 262
++ ++L+ V ++ EQ+ K +PV +A L ++ A Y SDS D+ E
Sbjct: 441 RSDLLAAIRMGIQLKKVQEQREQEAKREPVGND-----VATILSRRIAVEY-SDSDDDSE 494
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 40.4 bits (93), Expect = 0.002
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 127 KIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPLPPPALG 167
+ + Q +Q L +D +PP PPPPPPP PPP G
Sbjct: 386 RYMRQPIKQELICKWIDPDELAGLPPPPPPPPPPPPPPPAG 426
Score = 38.1 bits (87), Expect = 0.010
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 148 GTIPPHPPPPPPPLPPPALG 167
G PP PPPPPPP PPPA G
Sbjct: 408 GLPPPPPPPPPPPPPPPAGG 427
Score = 37.7 bits (86), Expect = 0.012
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 152 PHPPPPPPPLPPPALGLHQSTSA 174
P PPPPPPP PPPAL + +T++
Sbjct: 161 PSPPPPPPPPPPPALSGYTTTNS 183
Score = 33.1 bits (74), Expect = 0.31
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 150 IPPHPPPPPPPLPPPALGLHQSTS 173
+PP P PPPPP PPP L T+
Sbjct: 157 LPPTPSPPPPPPPPPPPALSGYTT 180
Score = 30.8 bits (68), Expect = 1.5
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 117 ELAALRAQIAKIVTQQEQQNLTAGDLDSTTFGTIPPHPPPPPPPLPP 163
E A A+ A +V + G S G P PPPP PPLPP
Sbjct: 116 EAPAAAARAAALVAHPGAGSYPCGGGSS---GAQPSAPPPPAPPLPP 159
Score = 28.5 bits (62), Expect = 7.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 151 PPHPPPPPPPLPPP 164
PP PP PP P PPP
Sbjct: 152 PPAPPLPPTPSPPP 165
Score = 28.5 bits (62), Expect = 7.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 151 PPHPPPPPPPLPPP 164
PP PP P PP PPP
Sbjct: 155 PPLPPTPSPPPPPP 168
Score = 28.1 bits (61), Expect = 9.9
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 154 PPPPPPPLPPPALGLHQ 170
PPP PPP P PA HQ
Sbjct: 356 PPPAPPPPPAPAQHPHQ 372
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 40.0 bits (92), Expect = 0.003
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 34/132 (25%)
Query: 150 IPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLEIL 209
+PP PPPPPPP PPP + H + + +ANA VK+NP
Sbjct: 1441 LPPPPPPPPPPPPPPPVIPHPAAPSA--------AQANAILAPVKSNP------------ 1480
Query: 210 KEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRYRSDSQDEVEKGIPKSE 269
+ S S V P ++ P A++A A + + DE G+ +S+
Sbjct: 1481 -------VVSQTLSPGFVGPNILNPVLPVAIMASA-------QPAAIPSDETAPGVSESD 1526
Query: 270 SEATSERVLFGP 281
+ T VL P
Sbjct: 1527 RDQTLFSVLVRP 1538
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 39.7 bits (91), Expect = 0.003
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 79 KAPSRQISLPDLSQEEPQLKTPALANEEALQKICALENELAALRAQIAKIVTQQEQQNLT 138
+APS IS ++ L+ EE +Q + ++ E+A + QI K+ +Q+Q
Sbjct: 154 EAPSSPISGQPCGDDQ-NASPSKLSKEELIQSMDRVDREIAKVEQQILKLKKKQQQLEEE 212
Query: 139 AGDLDSTTFGTIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPK 198
A PP P P+ PP + + S V +I + K+A + +
Sbjct: 213 AA------------KPPEPEKPVSPPPVE-QKHRSIVQIIYDENRKKAEEAHKIFEGLGP 259
Query: 199 KPEMP 203
K E+P
Sbjct: 260 KVELP 264
Score = 30.4 bits (67), Expect = 2.0
Identities = 37/143 (25%), Positives = 54/143 (37%), Gaps = 31/143 (21%)
Query: 157 PPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVK---------------------- 194
PPPPLPPP + ST V+ + E+ A K LV+
Sbjct: 607 PPPPLPPPPEPI--STEPVETSRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKN 664
Query: 195 ---NNPKKPEMPNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAY 251
N ++ + N+L+ K+ S K R E+DV A+ +A E ++
Sbjct: 665 FYFNYKRRHNLDNLLQQHKQKTSRK----PREERDVSQCESVASTVSAQEDEDIEASNEE 720
Query: 252 RYRSDSQDEVEKGIPKSESEATS 274
DS+ E K S ATS
Sbjct: 721 ENPEDSEVEAVKPSEDSPENATS 743
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 39.7 bits (91), Expect = 0.003
Identities = 38/154 (24%), Positives = 60/154 (38%), Gaps = 28/154 (18%)
Query: 151 PPHPPPPPPPLPP--------------PALGLHQSTSAVDLIKE----RREKRAN----- 187
PP PPPPPP LPP P G + S+S+ + K+ +E R N
Sbjct: 116 PPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWMKESRQNSKQKN 175
Query: 188 ----AGKTLVKNNPKKPEMPNMLEILKEMNSVKL-RSVKRSEQDVKPKPVDATDPAALIA 242
AG++ +P P + V+L + + +P+ V+ + L
Sbjct: 176 SCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTE 235
Query: 243 EALKKKFAYRYRSDSQDEVEKGIPKSESEATSER 276
+K F R +D+ KGI S + + ER
Sbjct: 236 RQIKIWFQNRRMKYKKDQKAKGILHSPASQSPER 269
>gi|50511340 shootin1 isoform b [Homo sapiens]
Length = 456
Score = 39.7 bits (91), Expect = 0.003
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 149 TIPPHPPPPPPPLPPPALGLHQSTSAVDLIKERREKRANAGKTLVKNNPKKPEMPNMLEI 208
++PP PPPPPPPLPPP + S + +I++R + K K +PE +
Sbjct: 351 SVPP-PPPPPPPLPPPP--PNPIRSLMSMIRKRSHPSGSGAK---KEKATQPETTEEVTD 404
Query: 209 LKEMNSVKLRSVKRSEQDVKPKPVDAT 235
LK ++ + R ++ V +PV+ T
Sbjct: 405 LKRQAVEEM--MDRIKKGVHLRPVNQT 429
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 39.7 bits (91), Expect = 0.003
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 150 IPPHPPPPPPPLPPPALGLHQSTSAVD 176
+P PPPPPPPLPPP + TSAV+
Sbjct: 1544 VPIPPPPPPPPLPPPPPVIKPQTSAVE 1570
Score = 28.5 bits (62), Expect = 7.6
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 147 FGTIPPHPPPPPPPLPPPALGLH-QSTSAVDLIKERREKRANAGKTLVKNNPKKPEMP 203
+G P PPP PPP P PAL Q ++ +R+ +++ P+ P +P
Sbjct: 97 YGDWQPPPPPMPPP-PGPALSYQKQQQYKHQMLHHQRDGPPGLVPMELESPPESPPVP 153
Score = 28.1 bits (61), Expect = 9.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 147 FGTIPPHPPPPPPPLPPPAL 166
+G +PPPP PP PP AL
Sbjct: 8 YGGSSHYPPPPVPPPPPVAL 27
>gi|157277988 phosphodiesterase 4D isoform 1 [Homo sapiens]
Length = 809
Score = 39.3 bits (90), Expect = 0.004
Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 151 PPHPPPPPPPLPPP--ALGLHQSTSAVDLIKER-------------REKRANAGKTLVKN 195
PP PPP PPP PPP A G + S+ A ++ R ++ + A +T +
Sbjct: 75 PPPPPPLPPPPPPPGAARGRYASSGATGRVRHRGYSDTERYLYCRAMDRTSYAVETGHRP 134
Query: 196 NPKKPEM--PNMLEILKEMNSVKLRSVKRSEQDVKPKPVDATDPAALIAEALKKKFAYRY 253
KK M P+ + L+ + S RS D P A + +++ ++ Y
Sbjct: 135 GLKKSRMSWPSSFQGLRRFDVDNGTSAGRSPLDPMTSPGSGLILQANFVHSQRRE-SFLY 193
Query: 254 RSDSQDEVEKGIPKSESEATS 274
RSDS ++ PKS S +S
Sbjct: 194 RSDSDYDLS---PKSMSRNSS 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,471,548
Number of Sequences: 37866
Number of extensions: 717648
Number of successful extensions: 17400
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 9225
Number of HSP's gapped (non-prelim): 4841
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.