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Search of human proteins with 115529437
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|115529437 transmembrane protein 183A [Homo sapiens]
(376 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|115529437 transmembrane protein 183A [Homo sapiens] 778 0.0
gi|119369512 transmembrane protein 183B [Homo sapiens] 763 0.0
gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 35 0.14
gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo ... 33 0.42
gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo ... 33 0.42
gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens] 33 0.42
gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens] 33 0.42
gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens] 33 0.42
gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo... 33 0.55
gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo... 33 0.55
gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens] 32 0.93
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 31 1.6
gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [H... 31 1.6
gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [H... 31 1.6
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 31 1.6
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 31 1.6
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 31 2.1
gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform... 31 2.1
gi|63252886 prolyl 4-hydroxylase, alpha I subunit isoform 1 prec... 31 2.1
gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens] 30 2.7
gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens] 30 2.7
gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens] 30 2.7
gi|109134347 NY-REN-58 antigen [Homo sapiens] 30 2.7
gi|109134355 NY-REN-58 antigen [Homo sapiens] 30 2.7
gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo sapi... 30 3.5
gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [... 30 4.6
gi|54112380 F-box and leucine-rich repeat protein 10 isoform b [... 30 4.6
gi|4557563 excision repair cross-complementing rodent repair def... 29 6.0
gi|62868217 laminin, beta 3 precursor [Homo sapiens] 29 6.0
gi|62868215 laminin, beta 3 precursor [Homo sapiens] 29 6.0
>gi|115529437 transmembrane protein 183A [Homo sapiens]
Length = 376
Score = 778 bits (2008), Expect = 0.0
Identities = 376/376 (100%), Positives = 376/376 (100%)
Query: 1 MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYANSDPAVVRSGRVKKAVA 60
MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYANSDPAVVRSGRVKKAVA
Sbjct: 1 MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYANSDPAVVRSGRVKKAVA 60
Query: 61 NAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQEESIHERTVSRKKKSKR 120
NAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQEESIHERTVSRKKKSKR
Sbjct: 61 NAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQEESIHERTVSRKKKSKR 120
Query: 121 HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL 180
HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL
Sbjct: 121 HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL 180
Query: 181 DASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF 240
DASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF
Sbjct: 181 DASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF 240
Query: 241 WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL 300
WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL
Sbjct: 241 WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL 300
Query: 301 NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV 360
NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV
Sbjct: 301 NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV 360
Query: 361 RLFDWWHPQYPFSLRA 376
RLFDWWHPQYPFSLRA
Sbjct: 361 RLFDWWHPQYPFSLRA 376
>gi|119369512 transmembrane protein 183B [Homo sapiens]
Length = 376
Score = 763 bits (1970), Expect = 0.0
Identities = 370/376 (98%), Positives = 373/376 (99%)
Query: 1 MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYANSDPAVVRSGRVKKAVA 60
MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYA+SD AVVRSGRVKKAVA
Sbjct: 1 MARGPGPLGRPRPDTVAMPKRGKRLKFRAHDACSGRVTVADYADSDLAVVRSGRVKKAVA 60
Query: 61 NAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQEESIHERTVSRKKKSKR 120
NAV+QEVKSLCGLEASQVPAEEALSGAGEP DIIDSSDEMDAQEE+IHERTVSRKKKSKR
Sbjct: 61 NAVRQEVKSLCGLEASQVPAEEALSGAGEPYDIIDSSDEMDAQEENIHERTVSRKKKSKR 120
Query: 121 HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL 180
HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL
Sbjct: 121 HKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYRRHYTL 180
Query: 181 DASLPLRLRPESMEKLRCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF 240
DASLPLRLRPESMEKL CLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF
Sbjct: 181 DASLPLRLRPESMEKLHCLRACVIRSLYHMYEPFAARISKNPAIPESTPSTLKNSKCLLF 240
Query: 241 WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL 300
WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL
Sbjct: 241 WCRKIVGNRQEPMWEFNFKFKKQSPRLKSKCTGGLQPPVQYEDVHTNPDQDCCLLQVTTL 300
Query: 301 NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV 360
NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV
Sbjct: 301 NFIFIPIVMGMIFTLFTINVSTDMRHHRVRLVFQDSPVHGGRKLRSEQGVQVILDPVHSV 360
Query: 361 RLFDWWHPQYPFSLRA 376
RLFDWWHPQYPFSLRA
Sbjct: 361 RLFDWWHPQYPFSLRA 376
>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
Length = 1646
Score = 34.7 bits (78), Expect = 0.14
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 53 GRVKKAVANAVQQEVK--SLCGLEASQVPAEEALS---------GAGEPCDIIDSSDEMD 101
G+ KK+ +A E K S+ GLE QV E +L+ G GE + + DE +
Sbjct: 854 GQQKKSPLHAKMDESKEGSIQGLEEMQVEREGSLNPSLNEENVKGQGEKKEESEEEDEKE 913
Query: 102 AQEESIHERTVSRKKKSKRHKEELDGAG-GEEYPMDIWLLLASYIRPEDIVNFSLICKNA 160
+EE E + +K+ K +EE + GEE + L Y ED+ +F++ N
Sbjct: 914 EEEE---EEKLEEEKEEKEAQEEQESLSVGEEEDKEEGLEEIYY---EDMESFTISSGNT 967
Query: 161 WTV 163
+ V
Sbjct: 968 YFV 970
>gi|16306595 S-phase kinase-associated protein 2 isoform 1 [Homo
sapiens]
Length = 424
Score = 33.1 bits (74), Expect = 0.42
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 116 KKSKRHKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYR 175
++ K ++E G + P ++ L + S + +++ S +CK + + + W L
Sbjct: 83 RRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDL 142
Query: 176 RHYTLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPF 214
L + RL + + RC R+ + + L + PF
Sbjct: 143 TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF 181
>gi|14249170 S-phase kinase-associated protein 2 isoform 2 [Homo
sapiens]
Length = 410
Score = 33.1 bits (74), Expect = 0.42
Identities = 20/99 (20%), Positives = 43/99 (43%)
Query: 116 KKSKRHKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLYR 175
++ K ++E G + P ++ L + S + +++ S +CK + + + W L
Sbjct: 83 RRPKLNRENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDL 142
Query: 176 RHYTLDASLPLRLRPESMEKLRCLRACVIRSLYHMYEPF 214
L + RL + + RC R+ + + L + PF
Sbjct: 143 TGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF 181
>gi|30089926 F-box only protein 11 isoform 1 [Homo sapiens]
Length = 843
Score = 33.1 bits (74), Expect = 0.42
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 18/145 (12%)
Query: 96 SSDEMDAQEESIHERTVSRKKKSK--RHKEELDGAGGEEY-----PMDIWLLLASYIRPE 148
+ + M+ S E R K+++ ++L A E+Y P ++ L + SY+ +
Sbjct: 31 TKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQ 90
Query: 149 DIVNFSLICKNAWTVTCTAAFWTRLYRR--HYTLDASLP-----LRLRPESMEKLRCLRA 201
D+ + +CK + W RLY YT P ++ PE E +
Sbjct: 91 DLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKE 150
Query: 202 CVIRSLY---HMYEPFAARISKNPA 223
+ LY H+ FA NPA
Sbjct: 151 S-FQQLYKGAHVKPGFAEHFYSNPA 174
>gi|30089924 F-box only protein 11 isoform 2 [Homo sapiens]
Length = 686
Score = 33.1 bits (74), Expect = 0.42
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 18/145 (12%)
Query: 96 SSDEMDAQEESIHERTVSRKKKSK--RHKEELDGAGGEEY-----PMDIWLLLASYIRPE 148
+ + M+ S E R K+++ ++L A E+Y P ++ L + SY+ +
Sbjct: 31 TKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQ 90
Query: 149 DIVNFSLICKNAWTVTCTAAFWTRLYRR--HYTLDASLP-----LRLRPESMEKLRCLRA 201
D+ + +CK + W RLY YT P ++ PE E +
Sbjct: 91 DLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKE 150
Query: 202 CVIRSLY---HMYEPFAARISKNPA 223
+ LY H+ FA NPA
Sbjct: 151 S-FQQLYKGAHVKPGFAEHFYSNPA 174
>gi|30089922 F-box only protein 11 isoform 3 [Homo sapiens]
Length = 585
Score = 33.1 bits (74), Expect = 0.42
Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 18/145 (12%)
Query: 96 SSDEMDAQEESIHERTVSRKKKSK--RHKEELDGAGGEEY-----PMDIWLLLASYIRPE 148
+ + M+ S E R K+++ ++L A E+Y P ++ L + SY+ +
Sbjct: 31 TKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQ 90
Query: 149 DIVNFSLICKNAWTVTCTAAFWTRLYRR--HYTLDASLP-----LRLRPESMEKLRCLRA 201
D+ + +CK + W RLY YT P ++ PE E +
Sbjct: 91 DLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKE 150
Query: 202 CVIRSLY---HMYEPFAARISKNPA 223
+ LY H+ FA NPA
Sbjct: 151 S-FQQLYKGAHVKPGFAEHFYSNPA 174
>gi|223278381 ribosomal RNA processing 12 homolog isoform 2 [Homo
sapiens]
Length = 1236
Score = 32.7 bits (73), Expect = 0.55
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 55 VKKAVANAVQQEVKSLCGLEASQVPAEEA--LSGAGEPCDII--DSSDEMDAQEESIHER 110
++KA A A + S +E + EE G G+ + I DS DE D +EE
Sbjct: 974 IRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILADSEDEEDNEEEERSRG 1033
Query: 111 TVSRKKKSKRHKEELDGAGGEE 132
RK +R + L GG+E
Sbjct: 1034 KEQRKLARQRSRAWLKEGGGDE 1055
>gi|223278379 ribosomal RNA processing 12 homolog isoform 1 [Homo
sapiens]
Length = 1297
Score = 32.7 bits (73), Expect = 0.55
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 55 VKKAVANAVQQEVKSLCGLEASQVPAEEA--LSGAGEPCDII--DSSDEMDAQEESIHER 110
++KA A A + S +E + EE G G+ + I DS DE D +EE
Sbjct: 1035 IRKAEARAKRHRALSQAAVEEEEEEEEEEEPAQGKGDSIEEILADSEDEEDNEEEERSRG 1094
Query: 111 TVSRKKKSKRHKEELDGAGGEE 132
RK +R + L GG+E
Sbjct: 1095 KEQRKLARQRSRAWLKEGGGDE 1116
>gi|105990539 neurofilament, light polypeptide 68kDa [Homo sapiens]
Length = 543
Score = 32.0 bits (71), Expect = 0.93
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 63 VQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQEESIHERTVSRKKKSKRHK 122
V++ +++ EA P E G E + D+ +A+EE E + K++S+ K
Sbjct: 454 VEETIEAAKAEEAKDEPPSE---GEAEE----EEKDKEEAEEEEAAEEEEAAKEESEEAK 506
Query: 123 EELDGAGGEE 132
EE +G GEE
Sbjct: 507 EEEEGGEGEE 516
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 31.2 bits (69), Expect = 1.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 95 DSSDEMDAQEESIHERTVSRKKKSKRHKEE-------LDGAGGEEYPMDIWLLLASYIRP 147
DSSD A EE +R +K S++HK+E A E ++ S +RP
Sbjct: 215 DSSDSESATEEKSKKRKKKHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQPQSTVRP 274
Query: 148 EDI 150
E+I
Sbjct: 275 EEI 277
>gi|16306574 F-box and leucine-rich repeat protein 5 isoform 2 [Homo
sapiens]
Length = 565
Score = 31.2 bits (69), Expect = 1.6
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 115 KKKSKRHKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLY 174
+K K + G P ++ L + SY+ P+++ S + +T T + W LY
Sbjct: 64 EKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKHLY 123
Query: 175 RRHY 178
H+
Sbjct: 124 PVHW 127
>gi|16306572 F-box and leucine-rich repeat protein 5 isoform 1 [Homo
sapiens]
Length = 691
Score = 31.2 bits (69), Expect = 1.6
Identities = 15/64 (23%), Positives = 28/64 (43%)
Query: 115 KKKSKRHKEELDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICKNAWTVTCTAAFWTRLY 174
+K K + G P ++ L + SY+ P+++ S + +T T + W LY
Sbjct: 190 EKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTKTGSLWKHLY 249
Query: 175 RRHY 178
H+
Sbjct: 250 PVHW 253
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 31.2 bits (69), Expect = 1.6
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 11/58 (18%)
Query: 94 IDSSDEMDAQEESIHERTVSRKKKSKRHKEELDGAGGEEYPMDIWLLLASY---IRPE 148
++ +E+D QEE +++ + +EE +G+G EE P ++L A++ +RPE
Sbjct: 536 LEQEEEVDQQEEE--------EEEEEEEEEEEEGSGSEEKPFALFLPRATFVSSVRPE 585
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 31.2 bits (69), Expect = 1.6
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 11/58 (18%)
Query: 94 IDSSDEMDAQEESIHERTVSRKKKSKRHKEELDGAGGEEYPMDIWLLLASY---IRPE 148
++ +E+D QEE +++ + +EE +G+G EE P ++L A++ +RPE
Sbjct: 536 LEQEEEVDQQEEE--------EEEEEEEEEEEEGSGSEEKPFALFLPRATFVSSVRPE 585
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 30.8 bits (68), Expect = 2.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 185 PLRLRPESMEKLRCLRACVIRSLYHMYEP-FAARISKNPAIPESTPSTLKNSKCLL 239
PL L P+ + L L C+ +L HM + AAR+++ P++ E+ K +K L
Sbjct: 1437 PLPLHPDLPKWLASLEKCLRLALVHMLQGCVAARLARGPSLGEALKQLPKQNKLYL 1492
>gi|10947135 ATP-binding cassette, sub-family F, member 1 isoform b
[Homo sapiens]
Length = 807
Score = 30.8 bits (68), Expect = 2.1
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 47 PAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQEES 106
PA R+ KAV+ Q +K G EE G +P + + +D +EE
Sbjct: 153 PAKPEKNRINKAVSEEQQPALKGKKG-------KEEKSKGKAKPQNKFAA---LDNEEED 202
Query: 107 IHERTVSRKKKSKRHKEELDGAGGEEYPMDIWLLLASYIRPED 149
E + K+ K+ KE+ A EY + L A+ D
Sbjct: 203 KEEEIIKEKEPPKQGKEKAKKAEQMEYERQVASLKAANAAEND 245
>gi|63252886 prolyl 4-hydroxylase, alpha I subunit isoform 1
precursor [Homo sapiens]
Length = 534
Score = 30.8 bits (68), Expect = 2.1
Identities = 34/149 (22%), Positives = 51/149 (34%), Gaps = 29/149 (19%)
Query: 30 HDACSGRVTVADYANSDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVP----AEEALS 85
HD +G++T A Y S A + + V + + ++ L GL+ S A +
Sbjct: 366 HDPETGKLTTAQYRVSKSAWLSG--YENPVVSRINMRIQDLTGLDVSTAEELQVANYGVG 423
Query: 86 GAGEPCDIIDSSDEMDAQEESIHERTVSRKKKSKRHKEELDGAGGEEYPMDIWLLLASYI 145
G EP DE DA +E G G + WL S +
Sbjct: 424 GQYEPHFDFARKDEPDAFKEL--------------------GTGNR---IATWLFYMSDV 460
Query: 146 RPEDIVNFSLICKNAWTVTCTAAFWTRLY 174
F + + W TA FW L+
Sbjct: 461 SAGGATVFPEVGASVWPKKGTAVFWYNLF 489
>gi|169178090 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 44 NSDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQ 103
NS+ ++ G K + + +E + + PAE L G + S +
Sbjct: 69 NSERVMLEPGPTAKILWHCAVEETEPQPATGCASFPAEAQLLGYFSGAAVRQSGGQGSDA 128
Query: 104 EESIHERTVSRKKKSKRHKEELDGAGGEEY 133
RK++ RH E LDG EEY
Sbjct: 129 LPWGRAAYGGRKQRQWRHSEVLDGGSSEEY 158
>gi|169179398 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 44 NSDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQ 103
NS+ ++ G K + + +E + + PAE L G + S +
Sbjct: 69 NSERVMLEPGPTAKILWHCAVEETEPQPATGCASFPAEAQLLGYFSGAAVRQSGGQGSDA 128
Query: 104 EESIHERTVSRKKKSKRHKEELDGAGGEEY 133
RK++ RH E LDG EEY
Sbjct: 129 LPWGRAAYGGRKQRQWRHSEVLDGGSSEEY 158
>gi|169181282 PREDICTED: similar to hCG1784562 [Homo sapiens]
Length = 316
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/90 (24%), Positives = 34/90 (37%)
Query: 44 NSDPAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQ 103
NS+ ++ G K + + +E + + PAE L G + S +
Sbjct: 69 NSERVMLEPGPTAKILWHCAVEETEPQPATGCASFPAEAQLLGYFSGAAVRQSGGQGSDA 128
Query: 104 EESIHERTVSRKKKSKRHKEELDGAGGEEY 133
RK++ RH E LDG EEY
Sbjct: 129 LPWGRAAYGGRKQRQWRHSEVLDGGSSEEY 158
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 30.4 bits (67), Expect = 2.7
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 36 RVTVADYANSDPAVVRSGRVKKAVANAVQQEVKSLCG-LEASQVPAEEALSGAGEPCDII 94
++ V A S+ ++ S ++ K + ++QE ++ E +Q+ AE+ L
Sbjct: 479 QIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLE--------- 529
Query: 95 DSSDEMDAQEESIHERTVSRKKKSKRHKEELDGA 128
+ + ++ +HER R++K + KE+L A
Sbjct: 530 EKQIQWLEEKHKLHERITDREEKYNQAKEKLQRA 563
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 30.4 bits (67), Expect = 2.7
Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 36 RVTVADYANSDPAVVRSGRVKKAVANAVQQEVKSLCG-LEASQVPAEEALSGAGEPCDII 94
++ V A S+ ++ S ++ K + ++QE ++ E +Q+ AE+ L
Sbjct: 479 QIQVTSLAQSENDLLNSNQMLKEMVERLKQECRNFRSQAEKAQLEAEKTLE--------- 529
Query: 95 DSSDEMDAQEESIHERTVSRKKKSKRHKEELDGA 128
+ + ++ +HER R++K + KE+L A
Sbjct: 530 EKQIQWLEEKHKLHERITDREEKYNQAKEKLQRA 563
>gi|94538359 golgi autoantigen, golgin subfamily a, 6B [Homo
sapiens]
Length = 693
Score = 30.0 bits (66), Expect = 3.5
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 47 PAVVRSGRVKKAVANAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQEES 106
PAV + A ++QEV+ L G SQV +ALS + + + QEE
Sbjct: 291 PAVTSVVEQLQDEAKHLRQEVEGLEGKLQSQVENNQALSLLSK-----EQKQRLQEQEEM 345
Query: 107 IHERTVSRKKKSKRHKEE 124
+ E+ V R ++ +R E+
Sbjct: 346 LREQEVQRVREQERLCEQ 363
>gi|54112382 F-box and leucine-rich repeat protein 10 isoform a [Homo
sapiens]
Length = 1336
Score = 29.6 bits (65), Expect = 4.6
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 125 LDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICK--NAWTVTCTAAFWTRLYRRH 177
LD ++W+ + SY+ +D+ +C+ N W C WTR+ H
Sbjct: 1057 LDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRW--CCDKRLWTRIDLNH 1109
>gi|54112380 F-box and leucine-rich repeat protein 10 isoform b [Homo
sapiens]
Length = 1265
Score = 29.6 bits (65), Expect = 4.6
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 125 LDGAGGEEYPMDIWLLLASYIRPEDIVNFSLICK--NAWTVTCTAAFWTRLYRRH 177
LD ++W+ + SY+ +D+ +C+ N W C WTR+ H
Sbjct: 988 LDDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRW--CCDKRLWTRIDLNH 1040
>gi|4557563 excision repair cross-complementing rodent repair
deficiency, complementation group 3 [Homo sapiens]
Length = 782
Score = 29.3 bits (64), Expect = 6.0
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 61 NAVQQEVKSLCGLEASQVPAEEALSGAGEPCDIIDSSDEMDAQEESIHE-RTVSRKKKSK 119
+A+ + +S G S+V + S P D+ D ++MD EE E +TVS + K +
Sbjct: 218 SAISKTAESSGGPSTSRVTDPQGKSDI--PMDLFDFYEQMDKDEEEEEETQTVSFEVKQE 275
Query: 120 RHKEELDGAGGEEYPMDIWLLLASYIRPEDIVN 152
+E EYP LLA Y D VN
Sbjct: 276 MIEELQKRCIHLEYP-----LLAEYDFRNDSVN 303
>gi|62868217 laminin, beta 3 precursor [Homo sapiens]
Length = 1172
Score = 29.3 bits (64), Expect = 6.0
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 102 AQEESIHERTVSRKKKSKRHKEEL----DGAGGEEYPMDIWLLLASYIRPEDIVNFSLIC 157
AQ+ S R + + + S+R E L G GG P + L L P+ F+ +C
Sbjct: 729 AQQVSDSSRLLDQLRDSRREAERLVRQAGGGGGTGSPKLVALRLEMSSLPDLTPTFNKLC 788
Query: 158 KNAWTVTCT 166
N+ + CT
Sbjct: 789 GNSRQMACT 797
>gi|62868215 laminin, beta 3 precursor [Homo sapiens]
Length = 1172
Score = 29.3 bits (64), Expect = 6.0
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 102 AQEESIHERTVSRKKKSKRHKEEL----DGAGGEEYPMDIWLLLASYIRPEDIVNFSLIC 157
AQ+ S R + + + S+R E L G GG P + L L P+ F+ +C
Sbjct: 729 AQQVSDSSRLLDQLRDSRREAERLVRQAGGGGGTGSPKLVALRLEMSSLPDLTPTFNKLC 788
Query: 158 KNAWTVTCT 166
N+ + CT
Sbjct: 789 GNSRQMACT 797
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,690,096
Number of Sequences: 37866
Number of extensions: 718476
Number of successful extensions: 2330
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2309
Number of HSP's gapped (non-prelim): 40
length of query: 376
length of database: 18,247,518
effective HSP length: 104
effective length of query: 272
effective length of database: 14,309,454
effective search space: 3892171488
effective search space used: 3892171488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.