CSDA 14944

Name: CSDA	Sequence: fasta or formatted (372aa)		NCBI GI: 224586882
Description: cold shock domain protein A isoform a		Referenced in: RNases and RNA Stability
Other entries for this name: alt prot [303aa] cold shock domain protein A isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 13.7 51 5 C cysteine 0.0 0 0 D aspartate 4.0 15 1 E glutamate 7.5 28 5 F phenylalanine 2.2 8 1 G glycine 10.2 38 2 H histidine 1.3 5 1 I isoleucine 1.1 4 1 K lysine 3.8 14 2 L leucine 2.2 8 1 M methionine 0.5 2 1 N asparagine 4.6 17 2 P proline 11.8 44 2 Q glutamine 5.1 19 2 R arginine 11.0 41 3 S serine 4.8 18 2 T threonine 6.2 23 7 V valine 5.6 21 2 W tryptophan 0.3 1 1 Y tyrosine 4.0 15 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 cold shock domain protein A isoform a CSDA 0.562 cold shock domain protein A isoform b YBX1 0.389 nuclease sensitive element binding protein 1 YBX2 0.288 Y box binding protein 2 LIN28 0.057 lin-28 homolog LIN28B 0.054 lin-28 homolog B COL1A1 0.027 alpha 1 type I collagen preproprotein FOXD1 0.027 forkhead box D1 SRRM1 0.027 serine/arginine repetitive matrix 1 LOC100128074 0.026 PREDICTED: hypothetical protein PRB2 0.026 proline-rich protein BstNI subfamily 2 MAPT 0.024 microtubule-associated protein tau isoform 1 COL2A1 0.024 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.024 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL5A3 0.023 collagen, type V, alpha 3 preproprotein UBE2O 0.023 ubiquitin-conjugating enzyme E2O COL11A1 0.023 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.023 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.023 alpha 1 type XI collagen isoform A preproprotein [Ho... TAF4 0.020 TBP-associated factor 4 MUC4 0.020 mucin 4 isoform a PRB1 0.020 proline-rich protein BstNI subfamily 1 isoform 1 pre... RAD23B 0.020 UV excision repair protein RAD23 homolog B AMOT 0.020 angiomotin isoform 2 AMOT 0.020 angiomotin isoform 1 ARHGAP17 0.020 nadrin isoform 2 MAPT 0.019 microtubule-associated protein tau isoform 2 MAPT 0.019 microtubule-associated protein tau isoform 4 MAPT 0.019 microtubule-associated protein tau isoform 3 MAPT 0.019 microtubule-associated protein tau isoform 5 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.