Search of human proteins with 223555926

Search of human proteins with 223555926

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|223555926 transmembrane protein 71 isoform 2 [Homo sapiens]
         (232 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|223555926 transmembrane protein 71 isoform 2 [Homo sapiens]        478   e-135
gi|223555924 transmembrane protein 71 isoform 1 [Homo sapiens]        350   4e-97
gi|66346695 fibrillin 2 precursor [Homo sapiens]                       34   0.12 
gi|223671927 hypothetical protein LOC222234 isoform 2 [Homo sapi...    30   1.8  
gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo sapi...    30   1.8  
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]    29   3.0  
gi|24430141 fibrillin 1 precursor [Homo sapiens]                       28   5.1  
gi|56237021 fibrillin 3 precursor [Homo sapiens]                       28   5.1  

>gi|223555926 transmembrane protein 71 isoform 2 [Homo sapiens]
          Length = 232

 Score =  478 bits (1229), Expect = e-135
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 1   MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT 60
           MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT
Sbjct: 1   MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT 60

Query: 61  CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRIFRKKKRICHSFSSL 120
           CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRIFRKKKRICHSFSSL
Sbjct: 61  CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRIFRKKKRICHSFSSL 120

Query: 121 FNLSTSKSWLHGSIFGDINSSPSEDNWLKGTRRLDTDHCNGNETRLLQEVFFQAILLAVC 180
           FNLSTSKSWLHGSIFGDINSSPSEDNWLKGTRRLDTDHCNGNETRLLQEVFFQAILLAVC
Sbjct: 121 FNLSTSKSWLHGSIFGDINSSPSEDNWLKGTRRLDTDHCNGNETRLLQEVFFQAILLAVC 180

Query: 181 LIISACARWFMGEILASVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI 232
           LIISACARWFMGEILASVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI
Sbjct: 181 LIISACARWFMGEILASVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI 232


>gi|223555924 transmembrane protein 71 isoform 1 [Homo sapiens]
          Length = 276

 Score =  350 bits (899), Expect = 4e-97
 Identities = 193/295 (65%), Positives = 200/295 (67%), Gaps = 82/295 (27%)

Query: 1   MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT 60
           MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT
Sbjct: 1   MYRISQLMSTPVASSSRLEREYAGELSPTCIFPSFTCDSLDGYHSFECGSIDPLTGSHYT 60

Query: 61  CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRIFRKKKRICHSFSSL 120
           CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLV                
Sbjct: 61  CRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLV---------------- 104

Query: 121 FNLSTSKSWLHGSIFG----------------------------DINSSPSEDNWLKG-- 150
              STSKSWLHGSIFG                            D++ S   D+W  G  
Sbjct: 105 ---STSKSWLHGSIFGDINSSPSEDNWLKGTRRLDTDHCNGNADDLDCSSLTDDWESGKM 161

Query: 151 ---------------------------------TRRLDTDHCNGNETRLLQEVFFQAILL 177
                                            + R   +  + +ETRLLQEVFFQAILL
Sbjct: 162 NAESVITSSSSHIISQPPGGNSHSLSLQSQLTASERFQENSSDHSETRLLQEVFFQAILL 221

Query: 178 AVCLIISACARWFMGEILASVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI 232
           AVCLIISACARWFMGEILASVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI
Sbjct: 222 AVCLIISACARWFMGEILASVFTCSLMITVAYVKSLFLSLASYFKTTACARFVKI 276


>gi|66346695 fibrillin 2 precursor [Homo sapiens]
          Length = 2912

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 34   SFTCDSLDGYHSF-----ECGSIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNI 88
            SF C+  +GY S       C  ID        C R+P L   G  + TE SF CD     
Sbjct: 1137 SFECECFEGYESGFMMMKNCMDIDE-------CERNPLLCRGGTCVNTEGSFQCDCPLGH 1189

Query: 89   TLNPSQ 94
             L+PS+
Sbjct: 1190 ELSPSR 1195


>gi|223671927 hypothetical protein LOC222234 isoform 2 [Homo
           sapiens]
          Length = 275

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 50  SIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRI 106
           +ID L GS  T      LL    Y++TE SFL    G+ITL     ++  +  +  I
Sbjct: 104 TIDKLQGSSVTVSTEDGLL-KAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNI 159


>gi|223671925 hypothetical protein LOC222234 isoform 1 [Homo
           sapiens]
          Length = 392

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 50  SIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLCDKDGNITLNPSQTSVMYKENLVRI 106
           +ID L GS  T      LL    Y++TE SFL    G+ITL     ++  +  +  I
Sbjct: 221 TIDKLQGSSVTVSTEDGLL-KAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNI 276


>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
          Length = 1976

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 60  TCRRSPRLLTN---GYY---IWTEDSFLCDKDGNITLNPSQTSVMYKENLVRIFRKKKR 112
           TC     +L N    YY   I+T     C     + +NP +   +Y EN++ ++R KKR
Sbjct: 94  TCLNEASVLHNLKDRYYSGLIYTYSGLFC-----VVINPYKNLPIYSENIIEMYRGKKR 147


>gi|24430141 fibrillin 1 precursor [Homo sapiens]
          Length = 2871

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 11/53 (20%)

Query: 34  SFTCDSLDGYHSF----ECGSIDPLTGSHYTCRRSPRLLTNGYYIWTEDSFLC 82
           S+TC    GY S     EC  ID        C ++ R+  NG  I T+ SF C
Sbjct: 510 SYTCQCRAGYQSTLTRTECRDIDE-------CLQNGRICNNGRCINTDGSFHC 555


>gi|56237021 fibrillin 3 precursor [Homo sapiens]
          Length = 2809

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 30   CIFPSFTCDSLDGYHSFECG-SIDPLTGS------HYTCRRSPRLLTNGYYIWTEDSFLC 82
            C      C +L G  +  C   + PL GS         C   P L  NG  + T  SF C
Sbjct: 2218 CHARGMECKNLIGTFACVCPPGMRPLPGSGEGCTDDNECHAQPDLCVNGRCVNTAGSFRC 2277

Query: 83   DKDGNITLNPSQT 95
            D D     +P+ T
Sbjct: 2278 DCDEGFQPSPTLT 2290


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,720,964
Number of Sequences: 37866
Number of extensions: 374579
Number of successful extensions: 975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 31
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.