Guide to the Human Genome
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Name: TMEM71 Sequence: fasta or formatted (232aa) NCBI GI: 223555926
Description:

transmembrane protein 71 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {276aa} transmembrane protein 71 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         11           1
 C cysteine            4.7         11           1
 D aspartate           4.3         10           1
 E glutamate           4.3         10           1
 F phenylalanine       6.5         15           2
 G glycine             4.7         11           1
 H histidine           2.2          5           1
 I isoleucine          6.5         15           2
 K lysine              4.3         10           3
 L leucine            10.8         25           2
 M methionine          2.2          5           1
 N asparagine          3.9          9           1
 P proline             3.0          7           1
 Q glutamine           1.7          4           1
 R arginine            6.0         14           2
 S serine             13.4         31           3
 T threonine           7.3         17           2
 V valine              3.9          9           1
 W tryptophan          1.7          4           1
 Y tyrosine            3.9          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 71 isoform 2 
TMEM71                0.717   transmembrane protein 71 isoform 1 
FBN2                  0.020   fibrillin 2 precursor 
FAM185A               0.011   hypothetical protein LOC222234 isoform 2 
FAM185A               0.011   hypothetical protein LOC222234 isoform 1 
MYH10                 0.009   myosin, heavy polypeptide 10, non-muscle 
FBN1                  0.007   fibrillin 1 precursor 
FBN3                  0.007   fibrillin 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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