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Search of human proteins with 222537734
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222537734 hypothetical protein LOC349633 [Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222537734 hypothetical protein LOC349633 [Homo sapiens] 406 e-114
gi|31742482 arylsulfatase F precursor [Homo sapiens] 31 0.85
gi|84626580 hypothetical protein LOC80178 [Homo sapiens] 30 1.1
gi|8051636 tRNA exportin [Homo sapiens] 30 1.9
gi|57634534 nucleoporin 205kDa [Homo sapiens] 29 2.5
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens] 29 2.5
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens] 29 2.5
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens] 29 2.5
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens] 29 2.5
gi|46409390 transmembrane protein 179 [Homo sapiens] 29 3.2
gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 28 5.5
gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs... 28 5.5
gi|227496489 multiple C2 domains, transmembrane 2 isoform 2 [Hom... 28 7.2
gi|227496440 multiple C2 domains, transmembrane 2 isoform 1 [Hom... 28 7.2
gi|14249428 leucine-rich repeats and calponin homology (CH) doma... 28 7.2
gi|14670350 general transcription factor II, i isoform 1 [Homo s... 27 9.4
gi|209571547 kelch repeat and BTB (POZ) domain containing 4 isof... 27 9.4
gi|209693446 kelch repeat and BTB (POZ) domain containing 4 isof... 27 9.4
>gi|222537734 hypothetical protein LOC349633 [Homo sapiens]
Length = 207
Score = 406 bits (1044), Expect = e-114
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MAVFHDMLLQPLGMFLCLSLQLSSATFIRYSSTCFTFDEYYTITLDIKASSHIYESNAVY 60
MAVFHDMLLQPLGMFLCLSLQLSSATFIRYSSTCFTFDEYYTITLDIKASSHIYESNAVY
Sbjct: 1 MAVFHDMLLQPLGMFLCLSLQLSSATFIRYSSTCFTFDEYYTITLDIKASSHIYESNAVY 60
Query: 61 SVFVPVNDSVYAVVMKTLDENSDSAGLWQRADKNCYSNSTYYVKDQYMTVLEAQWQAPEP 120
SVFVPVNDSVYAVVMKTLDENSDSAGLWQRADKNCYSNSTYYVKDQYMTVLEAQWQAPEP
Sbjct: 61 SVFVPVNDSVYAVVMKTLDENSDSAGLWQRADKNCYSNSTYYVKDQYMTVLEAQWQAPEP 120
Query: 121 ENITEVEIQAFTVQIRALPILSTLKLREKLSTLALAAKIPQSSAFKPFFMITPKSIRLEG 180
ENITEVEIQAFTVQIRALPILSTLKLREKLSTLALAAKIPQSSAFKPFFMITPKSIRLEG
Sbjct: 121 ENITEVEIQAFTVQIRALPILSTLKLREKLSTLALAAKIPQSSAFKPFFMITPKSIRLEG 180
Query: 181 LANQVFSSPITEAIYILLAFLTSTLLF 207
LANQVFSSPITEAIYILLAFLTSTLLF
Sbjct: 181 LANQVFSSPITEAIYILLAFLTSTLLF 207
>gi|31742482 arylsulfatase F precursor [Homo sapiens]
Length = 590
Score = 30.8 bits (68), Expect = 0.85
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 18 LSLQLSSATFIRYSSTCFTFDEYYTITLDIKASSHIYESNAVYSVFVPVNDSVYAVVMKT 77
L+ +S+A+ S + F Y + + + + N +P+N++ A ++K
Sbjct: 68 LTQHISAASLCSPSRSAFLTGRYPIRSGMVSSGNRRVIQNLAVPAGLPLNETTLAALLKK 127
Query: 78 LDENSDSAGLWQRADKNCYSNSTY------YVKDQY----MTVLEAQWQAPEPENITEVE 127
++ G W + NC S S Y D Y T++++ W P+P TE+
Sbjct: 128 QGYSTGLIGKWHQG-LNCDSRSDQCHHPYNYGFDYYYGMPFTLVDSCW--PDPSRNTELA 184
Query: 128 IQA---FTVQIRALPILS 142
++ VQ+ A+ IL+
Sbjct: 185 FESQLWLCVQLVAIAILT 202
>gi|84626580 hypothetical protein LOC80178 [Homo sapiens]
Length = 433
Score = 30.4 bits (67), Expect = 1.1
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 82 SDSAGLWQRADKNCYSNST--YYVKDQYMTVLEAQWQAPEPENITEVEIQAFTVQIRALP 139
S ++ LW + S+ST K Q++ ++ P+P ++ VE++A ++R
Sbjct: 216 SQNSSLWAQLSSTQTSDSTDAAAAKTQFLQNMQTASGGPQPR-LSAVEVEAEAGRLRKAC 274
Query: 140 ILSTLKLREKLS 151
L L++RE+LS
Sbjct: 275 SLLRLRMREELS 286
>gi|8051636 tRNA exportin [Homo sapiens]
Length = 962
Score = 29.6 bits (65), Expect = 1.9
Identities = 21/91 (23%), Positives = 40/91 (43%)
Query: 39 EYYTITLDIKASSHIYESNAVYSVFVPVNDSVYAVVMKTLDENSDSAGLWQRADKNCYSN 98
E+ + I A I S + +F+P+ +++ V+++ +EN SA L ++ + Y
Sbjct: 741 EFIPLINQITAKFKIQVSPFLQQMFMPLLHAIFEVLLRPAEENDQSAALEKQMLRRSYFA 800
Query: 99 STYYVKDQYMTVLEAQWQAPEPENITEVEIQ 129
V M+ + A A E + IQ
Sbjct: 801 FLQTVTGSGMSEVIANQGAENVERVLVTVIQ 831
>gi|57634534 nucleoporin 205kDa [Homo sapiens]
Length = 2012
Score = 29.3 bits (64), Expect = 2.5
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 13 GMFLCLSLQLSSATFIRYSSTCFT--FDEYYTITLDIKASSHIYESNAVYSVFVPVNDSV 70
G L+ LS A T + +Y LD +S E N + + S+
Sbjct: 1337 GAVFTLTAHLSQAVLTEQKQTSVLGPAEAHYAFMLDSCFTSPPPEENPLVGFASIGDSSL 1396
Query: 71 YAVVMKTLDENSDSAGLWQRADKNCYSNSTYYVK 104
Y ++ K LD + G +QR + Y + YY++
Sbjct: 1397 YIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQ 1430
>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
Length = 3095
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 110 VLEAQWQAPEPENITEVEIQAFTVQIRALPILSTLKLREKLSTLALAAKIPQSSAFKPFF 169
++E P+PE +TEV + QI+ L T ++ +K+ L + + + + FF
Sbjct: 785 IMELIESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIPLLELPSVSEDDSEEEFF 844
>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
Length = 3069
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 110 VLEAQWQAPEPENITEVEIQAFTVQIRALPILSTLKLREKLSTLALAAKIPQSSAFKPFF 169
++E P+PE +TEV + QI+ L T ++ +K+ L + + + + FF
Sbjct: 785 IMELIESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIPLLELPSVSEDDSEEEFF 844
>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
Length = 3174
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 110 VLEAQWQAPEPENITEVEIQAFTVQIRALPILSTLKLREKLSTLALAAKIPQSSAFKPFF 169
++E P+PE +TEV + QI+ L T ++ +K+ L + + + + FF
Sbjct: 785 IMELIESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIPLLELPSVSEDDSEEEFF 844
>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
Length = 3135
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 110 VLEAQWQAPEPENITEVEIQAFTVQIRALPILSTLKLREKLSTLALAAKIPQSSAFKPFF 169
++E P+PE +TEV + QI+ L T ++ +K+ L + + + + FF
Sbjct: 785 IMELIESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIPLLELPSVSEDDSEEEFF 844
>gi|46409390 transmembrane protein 179 [Homo sapiens]
Length = 197
Score = 28.9 bits (63), Expect = 3.2
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 122 NITEVEIQAFTVQIRALPILSTLKLREKLSTLALAAKIPQSSAFKPFFMITPKSIRLEGL 181
N+T E + FTVQ P L L +L LAA + A++ F + EG
Sbjct: 51 NLTVQERERFTVQEWGPPAACRFSLLASLLSLLLAA----AHAWRTLFFLCKGH---EGS 103
Query: 182 ANQVFSSPITEAIYILLAFLTSTLL 206
F + + A + L F+ ST++
Sbjct: 104 FFSAFLNLLVSAFVVFLVFIASTIV 128
>gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 28.1 bits (61), Expect = 5.5
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 56 SNAVYSVFVPVND----SVYAVVMKTLDENSDSAGLWQRADKNCYSN--STYYVKDQYMT 109
S A YSV++P N+ S+++V+ D N +S ++ A+ + STY +
Sbjct: 453 SQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAEDTIQGSPLSTYVSINSDTG 512
Query: 110 VLEAQWQAPEPENITEVEIQAFTVQIRALPILSTLKLR 147
VL A + E ++++Q + P+ S + LR
Sbjct: 513 VLYALCSF-DYEQFRDLQMQVTASDSGSPPLSSNVSLR 549
>gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor
[Homo sapiens]
Length = 828
Score = 28.1 bits (61), Expect = 5.5
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 56 SNAVYSVFVPVND----SVYAVVMKTLDENSDSAGLWQRADKNCYSN--STYYVKDQYMT 109
S A YSV++P N+ S+++V+ D N +S ++ A+ + STY +
Sbjct: 453 SQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYSLAEDTIQGSPLSTYVSINSDTG 512
Query: 110 VLEAQWQAPEPENITEVEIQAFTVQIRALPILSTLKLR 147
VL A + E ++++Q + P+ S + LR
Sbjct: 513 VLYALCSF-DYEQFRDLQMQVTASDSGSPPLSSNVSLR 549
>gi|227496489 multiple C2 domains, transmembrane 2 isoform 2 [Homo
sapiens]
Length = 823
Score = 27.7 bits (60), Expect = 7.2
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 18 LSLQLSSATFIRYSSTCFTFDEYYTITLDIKASSHIYESNAVYSVFVPVNDSVYAVVMKT 77
L++ L + C T D Y L+ K +Y+S +Y PV D + + +++
Sbjct: 196 LTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKT---LYKSKVIYKNLNPVWDEIVVLPIQS 252
Query: 78 LDE 80
LD+
Sbjct: 253 LDQ 255
>gi|227496440 multiple C2 domains, transmembrane 2 isoform 1 [Homo
sapiens]
Length = 878
Score = 27.7 bits (60), Expect = 7.2
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 18 LSLQLSSATFIRYSSTCFTFDEYYTITLDIKASSHIYESNAVYSVFVPVNDSVYAVVMKT 77
L++ L + C T D Y L+ K +Y+S +Y PV D + + +++
Sbjct: 196 LTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKT---LYKSKVIYKNLNPVWDEIVVLPIQS 252
Query: 78 LDE 80
LD+
Sbjct: 253 LDQ 255
>gi|14249428 leucine-rich repeats and calponin homology (CH) domain
containing 3 [Homo sapiens]
Length = 712
Score = 27.7 bits (60), Expect = 7.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 150 LSTLALAAKIPQSSAFKPFFMITPKSIRLEGLANQVFSSPITEAIY 195
L+ + AA +P SSAF P ++ + N + SSP TE ++
Sbjct: 553 LNQVGCAATLPHSSAFTP--------LKSDDRPNALLSSPATETVH 590
>gi|14670350 general transcription factor II, i isoform 1 [Homo
sapiens]
Length = 998
Score = 27.3 bits (59), Expect = 9.4
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 14/162 (8%)
Query: 38 DEYYTITLDIKASSHIYESNAVYSVFVPVNDSVYAVVMKTLDENSDSAGLWQRADKNCYS 97
DE ++ ++ S H E N + VP DS V E S+ + + + YS
Sbjct: 264 DEKQPLSKPLQGSHHSSEGNEGTEMEVPAEDSTQHVP----SETSEDPEVEVTIEDDDYS 319
Query: 98 NSTYYVKDQYMTVLEAQWQAPEPENITEVEIQAFTVQIRALPILSTLK----LREKLSTL 153
+ K + Q PEP N + +++ F + I K L E+
Sbjct: 320 PPSKRPKANEL----PQPPVPEPANAGKRKVREFNFEKWNARITDLRKQVEELFERKYAQ 375
Query: 154 ALAAKIPQSSAFKPFFMITPKSIRLEGLANQV-FSSPITEAI 194
A+ AK P + + P F + + +EGL + F P T I
Sbjct: 376 AIKAKGPVTIPY-PLFQSHVEDLYVEGLPEGIPFRRPSTYGI 416
>gi|209571547 kelch repeat and BTB (POZ) domain containing 4 isoform
a [Homo sapiens]
Length = 534
Score = 27.3 bits (59), Expect = 9.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 62 VFVPVNDSVYAVVMKTLDENSDSAGLWQRADKNCYSNST 100
V VP D++Y++ KTL + +A ++ R N ++ +T
Sbjct: 340 VSVPGKDAIYSLGGKTLQDTLSNAVIYYRVGDNVWTETT 378
>gi|209693446 kelch repeat and BTB (POZ) domain containing 4 isoform
b [Homo sapiens]
Length = 518
Score = 27.3 bits (59), Expect = 9.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 62 VFVPVNDSVYAVVMKTLDENSDSAGLWQRADKNCYSNST 100
V VP D++Y++ KTL + +A ++ R N ++ +T
Sbjct: 324 VSVPGKDAIYSLGGKTLQDTLSNAVIYYRVGDNVWTETT 362
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.132 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,615,189
Number of Sequences: 37866
Number of extensions: 246887
Number of successful extensions: 627
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 618
Number of HSP's gapped (non-prelim): 18
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.