Guide to the Human Genome
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Name: C11orf34 Sequence: fasta or formatted (207aa) NCBI GI: 222537734
Description:

hypothetical protein LOC349633

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         18           2
 C cysteine            1.4          3           1
 D aspartate           3.9          8           1
 E glutamate           5.3         11           1
 F phenylalanine       6.3         13           2
 G glycine             1.4          3           1
 H histidine           1.0          2           1
 I isoleucine          6.8         14           1
 K lysine              4.3          9           1
 L leucine            12.1         25           2
 M methionine          2.9          6           1
 N asparagine          3.4          7           1
 P proline             4.3          9           1
 Q glutamine           4.8         10           1
 R arginine            2.4          5           1
 S serine             10.6         22           2
 T threonine           7.7         16           1
 V valine              6.3         13           2
 W tryptophan          1.0          2           1
 Y tyrosine            5.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC349633 
ARSF                  0.016   arylsulfatase F precursor 
C16orf59              0.013   hypothetical protein LOC80178 
XPOT                  0.013   tRNA exportin 
NUP205                0.010   nucleoporin 205kDa 
VPS13A                0.010   vacuolar protein sorting 13A isoform B 
VPS13A                0.010   vacuolar protein sorting 13A isoform D 
VPS13A                0.010   vacuolar protein sorting 13A isoform A 
VPS13A                0.010   vacuolar protein sorting 13A isoform C 
TMEM179               0.010   transmembrane protein 179 
PCDHGA9               0.008   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGA9               0.008   protocadherin gamma subfamily A, 9 isoform 2 precurs...
MCTP2                 0.008   multiple C2 domains, transmembrane 2 isoform 2 [Hom...
MCTP2                 0.008   multiple C2 domains, transmembrane 2 isoform 1 [Hom...
LRCH3                 0.008   leucine-rich repeats and calponin homology (CH) doma...
GTF2I                 0.005   general transcription factor II, i isoform 1 
KBTBD4                0.005   kelch repeat and BTB (POZ) domain containing 4 isof...
KBTBD4                0.005   kelch repeat and BTB (POZ) domain containing 4 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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