Guide to the Human Genome
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Name: SCRN2 Sequence: fasta or formatted (425aa) NCBI GI: 222537732
Description:

secernin 2 isoform 1

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [378aa] secernin 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         45           2
 C cysteine            1.9          8           1
 D aspartate           4.5         19           1
 E glutamate           6.8         29           1
 F phenylalanine       4.2         18           1
 G glycine             8.5         36           2
 H histidine           2.6         11           1
 I isoleucine          3.5         15           1
 K lysine              2.1          9           1
 L leucine             8.9         38           2
 M methionine          2.4         10           2
 N asparagine          1.4          6           1
 P proline             5.9         25           2
 Q glutamine           8.5         36           2
 R arginine            6.4         27           2
 S serine              7.1         30           3
 T threonine           5.4         23           2
 V valine              6.1         26           2
 W tryptophan          2.1          9           2
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secernin 2 isoform 1 
SCRN2                 0.876   secernin 2 isoform 2 
SCRN3                 0.493   secernin 3 
SCRN1                 0.484   secernin 1 isoform a 
SCRN1                 0.484   secernin 1 isoform b 
SCRN1                 0.484   secernin 1 isoform a 
SCRN1                 0.401   secernin 1 isoform c 
EPS8L1                0.007   epidermal growth factor receptor pathway substrate ...
EPS8L1                0.007   epidermal growth factor receptor pathway substrate ...
LOC100292715          0.006   PREDICTED: hypothetical protein 
TNRC6C                0.006   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.006   trinucleotide repeat containing 6C isoform 2 
LOC100132396          0.006   PREDICTED: hypothetical protein LOC100132396 
CAGE1                 0.006   cancer antigen 1 
PAX5                  0.006   paired box 5 
ABCC6                 0.005   ATP-binding cassette, sub-family C, member 6 isofor...
CCDC50                0.005   Ymer protein short isoform 
CCDC50                0.005   Ymer protein long isoform 
PDZD8                 0.005   PDZ domain containing 8 
MED12                 0.005   mediator complex subunit 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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