Guide to the Human Genome
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Name: SCRN2 Sequence: fasta or formatted (378aa) NCBI GI: 222537730
Description:

secernin 2 isoform 2

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [425aa] secernin 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         39           2
 C cysteine            2.1          8           1
 D aspartate           4.5         17           1
 E glutamate           6.3         24           1
 F phenylalanine       4.2         16           1
 G glycine             8.2         31           2
 H histidine           2.9         11           1
 I isoleucine          4.0         15           1
 K lysine              1.9          7           1
 L leucine             7.9         30           2
 M methionine          2.6         10           2
 N asparagine          1.6          6           1
 P proline             6.3         24           2
 Q glutamine           6.9         26           2
 R arginine            6.9         26           2
 S serine              7.7         29           3
 T threonine           5.8         22           2
 V valine              6.9         26           2
 W tryptophan          1.9          7           2
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secernin 2 isoform 2 
SCRN2                 0.988   secernin 2 isoform 1 
SCRN3                 0.542   secernin 3 
SCRN1                 0.515   secernin 1 isoform a 
SCRN1                 0.515   secernin 1 isoform b 
SCRN1                 0.515   secernin 1 isoform a 
SCRN1                 0.421   secernin 1 isoform c 
EPS8L1                0.008   epidermal growth factor receptor pathway substrate ...
EPS8L1                0.008   epidermal growth factor receptor pathway substrate ...
LOC100292715          0.007   PREDICTED: hypothetical protein 
LOC100132396          0.007   PREDICTED: hypothetical protein LOC100132396 
PAX5                  0.007   paired box 5 
ABCC6                 0.005   ATP-binding cassette, sub-family C, member 6 isofor...
PDZD8                 0.005   PDZ domain containing 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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