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Search of human proteins with 221139896
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221139896 hypothetical protein LOC339804 isoform 2 [Homo
sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221139896 hypothetical protein LOC339804 isoform 2 [Homo sapi... 231 1e-61
gi|221139892 hypothetical protein LOC339804 isoform 1 [Homo sapi... 231 1e-61
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 38 0.002
gi|116235474 LKB1 interacting protein [Homo sapiens] 35 0.017
gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo sa... 32 0.14
gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo sa... 32 0.14
gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo sa... 32 0.14
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 32 0.14
gi|46276863 parathymosin [Homo sapiens] 31 0.18
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 31 0.24
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 31 0.24
gi|148491082 disabled homolog 2 [Homo sapiens] 31 0.24
gi|87299628 biorientation of chromosomes in cell division 1-like... 30 0.31
gi|217330641 IWS1 homolog [Homo sapiens] 30 0.31
gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens] 30 0.31
gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens] 30 0.31
gi|82830424 gon-4-like isoform a [Homo sapiens] 30 0.41
gi|38373682 pleckstrin homology domain containing family G membe... 30 0.41
gi|111154084 pleckstrin homology domain containing family G memb... 30 0.41
gi|111154088 pleckstrin homology domain containing family G memb... 30 0.41
gi|111154080 pleckstrin homology domain containing family G memb... 30 0.41
gi|111154078 pleckstrin homology domain containing family G memb... 30 0.41
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 30 0.41
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 30 0.54
gi|21361639 DIPB protein [Homo sapiens] 30 0.54
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 29 0.70
gi|115511012 coiled-coil domain containing 136 [Homo sapiens] 29 0.70
gi|28274705 family with sequence similarity 9, member A [Homo sa... 29 0.70
gi|151101407 prothymosin, alpha isoform 1 [Homo sapiens] 29 0.92
gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 29 0.92
>gi|221139896 hypothetical protein LOC339804 isoform 2 [Homo
sapiens]
Length = 115
Score = 231 bits (588), Expect = 1e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 60
MQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD
Sbjct: 1 MQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 60
Query: 61 GLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK 115
GLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK
Sbjct: 61 GLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK 115
>gi|221139892 hypothetical protein LOC339804 isoform 1 [Homo
sapiens]
Length = 194
Score = 231 bits (588), Expect = 1e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 60
MQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD
Sbjct: 80 MQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 139
Query: 61 GLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK 115
GLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK
Sbjct: 140 GLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK 194
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 38.1 bits (87), Expect = 0.002
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 29 ENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRP 82
E D E EEE + E+ E E E +EE++ +Q +T+ SV +KRP
Sbjct: 1073 EEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPPRLTKPQSVAIKRKRP 1126
Score = 30.0 bits (66), Expect = 0.41
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 9 PMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDG 61
P+ P + ++ L P E + E EEE + E+ E E G +++ DG
Sbjct: 1332 PVSPNTSPGEKPEDDLIKPEEEEEEEEEEEEEEEEEEGEEEEGGGNVEKDPDG 1384
>gi|116235474 LKB1 interacting protein [Homo sapiens]
Length = 1099
Score = 34.7 bits (78), Expect = 0.017
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 17 QRQSKEVLATPLENRRDMEAEEENQINE--KQEPENAGETGQEEDD 60
Q+ S+EV A P E + E +EE + E +Q E AGE +EE D
Sbjct: 495 QKMSEEVRAEPQEEEEEKEGKEEKEEGEMVEQGEEEAGEEEEEEQD 540
>gi|34304356 phosphatase and actin regulator 3 isoform 3 [Homo
sapiens]
Length = 448
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 6 LNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKI 65
LN + G L ++ KE+LA L NR + E+ I ++ E E Q+ + K+
Sbjct: 274 LNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRTDEERQEIRQQIE---MKL 330
Query: 66 HTSVTRTPSVVESQKR 81
+++ P+V E ++R
Sbjct: 331 SKRLSQRPAVEELERR 346
>gi|34304354 phosphatase and actin regulator 3 isoform 2 [Homo
sapiens]
Length = 518
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 6 LNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKI 65
LN + G L ++ KE+LA L NR + E+ I ++ E E Q+ + K+
Sbjct: 344 LNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRTDEERQEIRQQIE---MKL 400
Query: 66 HTSVTRTPSVVESQKR 81
+++ P+V E ++R
Sbjct: 401 SKRLSQRPAVEELERR 416
>gi|18087853 phosphatase and actin regulator 3 isoform 1 [Homo
sapiens]
Length = 559
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 6 LNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKI 65
LN + G L ++ KE+LA L NR + E+ I ++ E E Q+ + K+
Sbjct: 385 LNDSIISGTLPRKCKKELLAVKLRNRPSKQELEDRNIFPRRTDEERQEIRQQIE---MKL 441
Query: 66 HTSVTRTPSVVESQKR 81
+++ P+V E ++R
Sbjct: 442 SKRLSQRPAVEELERR 457
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 31.6 bits (70), Expect = 0.14
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 22 EVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKI 65
EV P E + E EEE++ +E++E E G E D+ +K+
Sbjct: 526 EVKENPEEEEEEEEEEEEDEESEEEEEEEGESEGSEGDEEDEKV 569
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 29 ENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKR 81
E+ +++ + + N+K +P E+G E+DD KI T + E +++
Sbjct: 189 ESDEFLQSRKGQKKNQKNKPGPNIESGNEDDDASFKIKTVAQKKAEKKERERK 241
>gi|46276863 parathymosin [Homo sapiens]
Length = 102
Score = 31.2 bits (69), Expect = 0.18
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 17 QRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDG 61
+++ E A+ E ++++ EEEN E E E E G+EED+G
Sbjct: 20 KKEKVEEKASRKERKKEVVEEEENGAEE--EEEETAEDGEEEDEG 62
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 38 EENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDL 97
+++ +NE +N +TG+ D GL + +T P V+ +Q L G+T+S V
Sbjct: 731 KKHLVNEWLSEKNE-KTGKPSD-GLSERPLRITTDPEVLATQLNSLPGLTYSPHV----- 783
Query: 98 GNEYPTPRSYTR 109
Y TP+ Y R
Sbjct: 784 ---YSTPKHYIR 792
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 38 EENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDL 97
+++ +NE +N +TG+ D GL + +T P V+ +Q L G+T+S V
Sbjct: 731 KKHLVNEWLSEKNE-KTGKPSD-GLSERPLRITTDPEVLATQLNSLPGLTYSPHV----- 783
Query: 98 GNEYPTPRSYTR 109
Y TP+ Y R
Sbjct: 784 ---YSTPKHYIR 792
>gi|148491082 disabled homolog 2 [Homo sapiens]
Length = 770
Score = 30.8 bits (68), Expect = 0.24
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 37 EEENQINEKQEP-ENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRP-LKGVTFSREVIV 94
EE+ +I E + EN E DD K+ + V + + P L T S+++++
Sbjct: 177 EEKKKIEEASKAVENGSEALMILDDQTNKLKSGVDQMDLFGDMSTPPDLNSPTESKDILL 236
Query: 95 VDLGNEYPTPRSYTREH 111
VDL +E T ++ RE+
Sbjct: 237 VDLNSEIDTNQNSLREN 253
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 30.4 bits (67), Expect = 0.31
Identities = 10/35 (28%), Positives = 25/35 (71%)
Query: 17 QRQSKEVLATPLENRRDMEAEEENQINEKQEPENA 51
+R+ ++ ++ P+E++++ E++EE + E+ EP A
Sbjct: 2967 ERKRQKSVSDPVEDKKEQESDEEEEEEEEDEPSGA 3001
>gi|217330641 IWS1 homolog [Homo sapiens]
Length = 819
Score = 30.4 bits (67), Expect = 0.31
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 19 QSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQ-------EEDDGLQKIH 66
QS + ATP+++ RD ++ E+ +NE+ + G + + +DGL K H
Sbjct: 10 QSDDGGATPVQDERDSGSDGEDDVNEQHSGSDTGSVERHSENETSDREDGLPKGH 64
>gi|57242757 calsyntenin 1 isoform 1 [Homo sapiens]
Length = 981
Score = 30.4 bits (67), Expect = 0.31
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 23 VLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 60
+ P+E D + EE E++E E E G+EEDD
Sbjct: 910 ITVNPMETYEDQHSSEEE---EEEEEEEESEDGEEEDD 944
>gi|57242755 calsyntenin 1 isoform 2 [Homo sapiens]
Length = 971
Score = 30.4 bits (67), Expect = 0.31
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 23 VLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDD 60
+ P+E D + EE E++E E E G+EEDD
Sbjct: 900 ITVNPMETYEDQHSSEEE---EEEEEEEESEDGEEEDD 934
>gi|82830424 gon-4-like isoform a [Homo sapiens]
Length = 2240
Score = 30.0 bits (66), Expect = 0.41
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 24 LATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVV-ESQKRP 82
LA+ ++ E+EEEN E EPE E +EE +G++ + T V +S ++P
Sbjct: 1500 LASERRMSQEGESEEENSQEENSEPE---EEEEEEAEGMESLQKEDEMTDEAVGDSAEKP 1556
>gi|38373682 pleckstrin homology domain containing family G member 5
isoform a [Homo sapiens]
Length = 1006
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 37 EEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVD 96
EEE++ E++E E E G++ T + ++ +SQ G T + ++VV+
Sbjct: 706 EEEDEQEEEEEEEEEEEEGEDSGTSAASSPTIMRKSSGSPDSQHCASDGSTETLAMVVVE 765
Query: 97 LGNEYPTP 104
G+ +P
Sbjct: 766 PGDTLSSP 773
>gi|111154084 pleckstrin homology domain containing family G member
5 isoform b [Homo sapiens]
Length = 1083
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 37 EEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVD 96
EEE++ E++E E E G++ T + ++ +SQ G T + ++VV+
Sbjct: 783 EEEDEQEEEEEEEEEEEEGEDSGTSAASSPTIMRKSSGSPDSQHCASDGSTETLAMVVVE 842
Query: 97 LGNEYPTP 104
G+ +P
Sbjct: 843 PGDTLSSP 850
>gi|111154088 pleckstrin homology domain containing family G member
5 isoform a [Homo sapiens]
Length = 1006
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 37 EEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVD 96
EEE++ E++E E E G++ T + ++ +SQ G T + ++VV+
Sbjct: 706 EEEDEQEEEEEEEEEEEEGEDSGTSAASSPTIMRKSSGSPDSQHCASDGSTETLAMVVVE 765
Query: 97 LGNEYPTP 104
G+ +P
Sbjct: 766 PGDTLSSP 773
>gi|111154080 pleckstrin homology domain containing family G member
5 isoform a [Homo sapiens]
Length = 1006
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 37 EEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVD 96
EEE++ E++E E E G++ T + ++ +SQ G T + ++VV+
Sbjct: 706 EEEDEQEEEEEEEEEEEEGEDSGTSAASSPTIMRKSSGSPDSQHCASDGSTETLAMVVVE 765
Query: 97 LGNEYPTP 104
G+ +P
Sbjct: 766 PGDTLSSP 773
>gi|111154078 pleckstrin homology domain containing family G member
5 isoform c [Homo sapiens]
Length = 1062
Score = 30.0 bits (66), Expect = 0.41
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 37 EEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVD 96
EEE++ E++E E E G++ T + ++ +SQ G T + ++VV+
Sbjct: 762 EEEDEQEEEEEEEEEEEEGEDSGTSAASSPTIMRKSSGSPDSQHCASDGSTETLAMVVVE 821
Query: 97 LGNEYPTP 104
G+ +P
Sbjct: 822 PGDTLSSP 829
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 17 QRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQK 64
+R +E LA E R + EAE + E+QE + QEE + LQK
Sbjct: 629 KRMREEQLAREAEARAEREAEARRR--EEQEAREKAQAEQEEQERLQK 674
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 29 ENRRDMEAEEENQINEKQEPENA-GETGQ-----EEDDGLQK---IHTSVTRTPSVVES 78
+ ++ E E+E + K EPE A GE G+ +ED G QK +HT P V ES
Sbjct: 4420 QEQKAKEEEKEEKEETKSEPEKAEGEDGEKEEKAKEDKGKQKLRQLHTHRYGEPEVPES 4478
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 21 KEVLATPLENRRDMEAE--EENQINEKQEPENAGETGQEEDD 60
KE +E R++E+E EE++ E+ E E ET +E +D
Sbjct: 78 KEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESED 119
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 19 QSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEED 59
+S+E +E+ ++ EAEE+NQ E+ E E GET E +
Sbjct: 124 ESEEDSEEEMEDEQESEAEEDNQ--EEGESEAEGETEAESE 162
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 17 QRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQ 63
+R+ + E+ + E+EEE++ E+ E E+ E+ ++ ++ ++
Sbjct: 88 EREIESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEEME 134
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 16 VQRQSKEVLATPLENRRDMEAE--EENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTP 73
VQ +S+ A E E E E + + EPE+ G QE ++ Q+
Sbjct: 1899 VQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQEAEEAAQEAEGQTQPES 1958
Query: 74 SVVESQKRPLKGVTFSREVIVVDL 97
V+ESQ+ + S +V +++
Sbjct: 1959 EVIESQEAEEEAQPESEDVEALEV 1982
>gi|115511012 coiled-coil domain containing 136 [Homo sapiens]
Length = 1154
Score = 29.3 bits (64), Expect = 0.70
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 22 EVLATPL--ENRRDMEAEEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQ 79
E++A P E + E +EEN+ +K+E E ++ +EEDD + + P +
Sbjct: 1061 ELVAEPADPEEAKSTEDQEENE-EDKEEEEKEEDSEEEEDDADSSLESPEENNPLRLSES 1119
Query: 80 KR 81
K+
Sbjct: 1120 KK 1121
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 35 EAEEENQINEKQEPENAGETGQEEDDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIV 94
E EE N E +E + E G+ E + HT + T + KG+ RE+I
Sbjct: 81 ECEERNPFTETREEDVTDEHGEREPFAEKDEHTGI-HTMKLEHIAADIKKGLAAKREMIK 139
Query: 95 VDLGNEYPTPRSYTREHKERK 115
+D T + R K+++
Sbjct: 140 IDKAAYRKTKNTIERALKKKQ 160
Score = 28.9 bits (63), Expect = 0.92
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 22 EVLATPLENRRDMEAEEENQINEKQ-EPENAGETGQEEDDGLQKIHTSVTRTPSVVESQK 80
EV+ E + E EEE + E++ E E GE G+E G + T E ++
Sbjct: 215 EVIVVEDEEEEEKEEEEEKEEEEEEGEEEGGGEEGEEGGGGGEGEETEEEEEEEEEEEEE 274
Query: 81 RPLK 84
+K
Sbjct: 275 EQIK 278
>gi|151101407 prothymosin, alpha isoform 1 [Homo sapiens]
Length = 111
Score = 28.9 bits (63), Expect = 0.92
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 29 ENRRDMEAEEENQINEKQEPENAGETGQEEDDG 61
EN + E E +N+++E++E E +EE DG
Sbjct: 40 ENEENGEQEADNEVDEEEEEGGEEEEEEEEGDG 72
>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
Length = 1646
Score = 28.9 bits (63), Expect = 0.92
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 29 ENRRDMEAEEENQINEKQEPENAGETGQEED--DGLQKIH 66
E + + EEE + E QE + + G+EED +GL++I+
Sbjct: 914 EEEEEEKLEEEKEEKEAQEEQESLSVGEEEDKEEGLEEIY 953
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.127 0.342
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,670,683
Number of Sequences: 37866
Number of extensions: 203223
Number of successful extensions: 1841
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 449
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.