Guide to the Human Genome
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Name: ZNF396 Sequence: fasta or formatted (333aa) NCBI GI: 21955239
Description:

zinc finger protein 396

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         16           1
 C cysteine            2.7          9           1
 D aspartate           3.6         12           1
 E glutamate          10.2         34           4
 F phenylalanine       3.0         10           2
 G glycine             5.1         17           2
 H histidine           4.2         14           2
 I isoleucine          4.5         15           1
 K lysine              7.8         26           2
 L leucine             9.9         33           2
 M methionine          2.1          7           1
 N asparagine          2.4          8           1
 P proline             4.5         15           1
 Q glutamine           7.5         25           2
 R arginine            5.7         19           2
 S serine             10.5         35           3
 T threonine           5.1         17           2
 V valine              2.4          8           1
 W tryptophan          1.8          6           1
 Y tyrosine            2.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 396 
ZNF24                 0.441   zinc finger protein 24 
ZSCAN23               0.354   zinc finger protein 390 
ZNF323                0.333   zinc finger protein 323 
ZNF323                0.333   zinc finger protein 323 
ZNF323                0.333   zinc finger protein 323 
ZNF323                0.333   zinc finger protein 323 
ZSCAN16               0.318   zinc finger and SCAN domain containing 16 
ZNF193                0.316   zinc finger protein 193 
ZSCAN12               0.310   zinc finger and SCAN domain containing 12 
ZNF397OS              0.283   zinc finger protein 397 opposite strand 
ZSCAN21               0.278   zinc finger protein 38 
ZNF397                0.275   zinc finger protein 397 isoform 1 
ZNF232                0.272   zinc finger protein 232 
ZNF192                0.249   zinc finger protein 192 
ZNF187                0.222   zinc finger protein 187 isoform b 
SCAND3                0.220   SCAN domain containing 3 
ZNF187                0.219   zinc finger protein 187 isoform a 
ZKSCAN3               0.216   zinc finger with KRAB and SCAN domains 3 
ZKSCAN4               0.207   zinc finger with KRAB and SCAN domains 4 
ZNF165                0.204   zinc finger protein 165 
ZSCAN22               0.204   zinc finger and SCAN domain containing 22 
ZKSCAN1               0.199   zinc finger protein 36 
ZNF397                0.196   zinc finger protein 397 isoform 2 
ZKSCAN5               0.187   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               0.187   zinc finger with KRAB and SCAN domains 5 
ZNF263                0.175   zinc finger protein 263 
ZNF167                0.170   zinc finger protein 167 isoform 1 
ZNF167                0.170   zinc finger protein 167 isoform 2 
ZSCAN29               0.170   zinc finger protein 690 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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