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Search of human proteins with 21389571
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21389571 GSG1-like isoform 2 [Homo sapiens]
(176 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21389571 GSG1-like isoform 2 [Homo sapiens] 381 e-106
gi|157951718 GSG1-like isoform 1 [Homo sapiens] 381 e-106
gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens] 143 9e-35
gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens] 143 9e-35
gi|169211272 PREDICTED: germ cell-specific gene 1-like protein 2... 132 2e-31
gi|169211660 PREDICTED: germ cell-specific gene 1-like protein 2... 132 2e-31
gi|169210878 PREDICTED: germ cell-specific gene 1-like protein 2... 132 2e-31
gi|21361975 voltage-dependent calcium channel gamma-7 subunit [H... 39 0.002
gi|22027551 voltage-dependent calcium channel gamma-5 subunit is... 33 0.098
gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Ho... 32 0.28
gi|187936946 hypothetical protein LOC84140 [Homo sapiens] 30 0.83
gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Ho... 30 1.1
gi|4505907 peripheral myelin protein 22 [Homo sapiens] 30 1.4
gi|24430165 peripheral myelin protein 22 [Homo sapiens] 30 1.4
gi|24430163 peripheral myelin protein 22 [Homo sapiens] 30 1.4
gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens] 29 1.8
gi|81295809 pericentrin [Homo sapiens] 28 3.1
gi|55741661 hypothetical protein LOC57653 [Homo sapiens] 28 4.1
gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens] 28 4.1
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 28 5.4
gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Ho... 28 5.4
gi|218563749 ArfGAP with coiled-coil, ankyrin repeat and PH doma... 28 5.4
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] 28 5.4
gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens] 28 5.4
gi|4505891 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 pr... 27 7.0
gi|7656950 voltage-dependent calcium channel gamma-5 subunit iso... 27 7.0
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 27 7.0
>gi|21389571 GSG1-like isoform 2 [Homo sapiens]
Length = 176
Score = 381 bits (979), Expect = e-106
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWD 60
MCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWD
Sbjct: 1 MCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWD 60
Query: 61 YGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFR 120
YGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFR
Sbjct: 61 YGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFR 120
Query: 121 ERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV 176
ERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV
Sbjct: 121 ERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV 176
>gi|157951718 GSG1-like isoform 1 [Homo sapiens]
Length = 331
Score = 381 bits (979), Expect = e-106
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWD 60
MCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWD
Sbjct: 156 MCLELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWD 215
Query: 61 YGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFR 120
YGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFR
Sbjct: 216 YGWSFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKYFR 275
Query: 121 ERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV 176
ERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV
Sbjct: 276 ERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQEAPELNRQCWVLGHWV 331
>gi|123317881 germ cell associated 1 isoform 4 [Homo sapiens]
Length = 362
Score = 143 bits (360), Expect = 9e-35
Identities = 66/105 (62%), Positives = 84/105 (80%), Gaps = 3/105 (2%)
Query: 4 ELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGW 63
+L + N GLKL+AFAAV +VLSGLLGMVAHMMY+QVFQ TV+LGPEDWRPH W+YGW
Sbjct: 187 DLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGW 246
Query: 64 SFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEP 108
+F +AW SFTCCMA++VTT N+YT+ V+EF+ K + ++E P
Sbjct: 247 AFYMAWLSFTCCMASAVTTFNTYTRMVLEFKCKH---SKSFKENP 288
>gi|123317861 germ cell associated 1 isoform 2 [Homo sapiens]
Length = 326
Score = 143 bits (360), Expect = 9e-35
Identities = 66/105 (62%), Positives = 84/105 (80%), Gaps = 3/105 (2%)
Query: 4 ELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGW 63
+L + N GLKL+AFAAV +VLSGLLGMVAHMMY+QVFQ TV+LGPEDWRPH W+YGW
Sbjct: 151 DLLLTGNPACGLKLSAFAAVSSVLSGLLGMVAHMMYSQVFQATVNLGPEDWRPHVWNYGW 210
Query: 64 SFCLAWGSFTCCMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEP 108
+F +AW SFTCCMA++VTT N+YT+ V+EF+ K + ++E P
Sbjct: 211 AFYMAWLSFTCCMASAVTTFNTYTRMVLEFKCKH---SKSFKENP 252
>gi|169211272 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 132 bits (331), Expect = 2e-31
Identities = 54/101 (53%), Positives = 77/101 (76%)
Query: 15 LKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTC 74
L+++A A+F VL+GLLGMVAHMMYT +FQ+TV+LGPEDW+P +WDYGWS+CLAWGSF
Sbjct: 157 LRVDALVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFAL 216
Query: 75 CMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEA 115
C+A SV+ ++ +T +EF K++ + +F++PEA
Sbjct: 217 CLAVSVSAMSRFTAARLEFTEKQQAQNGSRHSQHSFLEPEA 257
>gi|169211660 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 132 bits (331), Expect = 2e-31
Identities = 54/101 (53%), Positives = 77/101 (76%)
Query: 15 LKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTC 74
L+++A A+F VL+GLLGMVAHMMYT +FQ+TV+LGPEDW+P +WDYGWS+CLAWGSF
Sbjct: 157 LRVDALVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFAL 216
Query: 75 CMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEA 115
C+A SV+ ++ +T +EF K++ + +F++PEA
Sbjct: 217 CLAVSVSAMSRFTAARLEFTEKQQAQNGSRHSQHSFLEPEA 257
>gi|169210878 PREDICTED: germ cell-specific gene 1-like protein
2-like [Homo sapiens]
Length = 293
Score = 132 bits (331), Expect = 2e-31
Identities = 54/101 (53%), Positives = 77/101 (76%)
Query: 15 LKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTC 74
L+++A A+F VL+GLLGMVAHMMYT +FQ+TV+LGPEDW+P +WDYGWS+CLAWGSF
Sbjct: 157 LRVDALVAIFMVLAGLLGMVAHMMYTTIFQITVNLGPEDWKPQTWDYGWSYCLAWGSFAL 216
Query: 75 CMAASVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEA 115
C+A SV+ ++ +T +EF K++ + +F++PEA
Sbjct: 217 CLAVSVSAMSRFTAARLEFTEKQQAQNGSRHSQHSFLEPEA 257
>gi|21361975 voltage-dependent calcium channel gamma-7 subunit [Homo
sapiens]
Length = 275
Score = 38.9 bits (89), Expect = 0.002
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 21 AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH-SWDYGWSFCLAWGSFTCCMAAS 79
+ +F +LSGL +V ++Y V P + + YGWSF A SF A
Sbjct: 134 SGIFFILSGLSLVVGLVLYISSINDEVMNRPSSSEQYFHYRYGWSFAFAASSFLLKEGAG 193
Query: 80 VTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDP 113
V ++ +TK E E+ YR P F P
Sbjct: 194 VMSVYLFTKRYAE--------EEMYRPHPAFYRP 219
>gi|22027551 voltage-dependent calcium channel gamma-5 subunit
isoform a [Homo sapiens]
Length = 275
Score = 33.5 bits (75), Expect = 0.098
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 21 AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH-SWDYGWSFCLAWGSFTCCMAAS 79
+ +F +LSGL +V ++Y + +D + ++ YGWSF A SF +A
Sbjct: 134 SGIFFILSGLSLVVGLVLYISSINDEMLNRTKDAETYFNYKYGWSFAFAAISFLLTESAG 193
Query: 80 VTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDP 113
V ++ + KR E YR P F P
Sbjct: 194 VMSVYLFM--------KRYTAEDMYRPHPGFYRP 219
>gi|7656948 voltage-dependent calcium channel gamma-4 subunit [Homo
sapiens]
Length = 327
Score = 32.0 bits (71), Expect = 0.28
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 21 AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASV 80
A + V +GL ++ ++Y S ++ + + ++YGWSF SF V
Sbjct: 141 AGILFVAAGLSNIIGIIVYISSNTGDPSDKRDEDKKNHYNYGWSFYFGALSFIVAETVGV 200
Query: 81 TTLNSYTKTVIEFRHKRK 98
+N Y + E R K K
Sbjct: 201 LAVNIYIEKNKELRFKTK 218
>gi|187936946 hypothetical protein LOC84140 [Homo sapiens]
Length = 660
Score = 30.4 bits (67), Expect = 0.83
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 84 NSYTKTVIE----FRHKRKVFEQGYREEPTFIDPEAIKYFRERMEKRDGSEEDFHLDCRH 139
N TK+V E F + K+ E+ EE FID + ++E+ E + SEE+ ++ H
Sbjct: 601 NQETKSVTEDKESFNEEEKIEERENGEENYFIDTNSQDSYKEKDEANEESEEEKSVEESH 660
>gi|5729756 voltage-dependent calcium channel gamma-3 subunit [Homo
sapiens]
Length = 315
Score = 30.0 bits (66), Expect = 1.1
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 21 AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH--SWDYGWSFCLAWGSFTCCMAA 78
A +F V +GL ++ ++Y ++ + G R S+ YGWSF SF
Sbjct: 138 AGIFFVSAGLSNIIGIIVY-----ISANAGDPGQRDSKKSYSYGWSFYFGAFSFIIAEIV 192
Query: 79 SVTTLNSYTKTVIEFRHKRKVFEQGYREEPTFIDPEAIKY-FRERMEKR 126
V ++ Y + + R K + ++ TF +Y FR R R
Sbjct: 193 GVVAVHIYIEKHQQLRAKS---HSEFLKKSTFARLPPYRYRFRRRSSSR 238
>gi|4505907 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 23 VFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHS-WDYGWSFCLAWGSFTCCMAASV 80
+F +L+GL M A +YT + +W +S + YG+++ LAW +F + + V
Sbjct: 101 IFQILAGLCVMSAAAIYT--------VRHPEWHLNSDYSYGFAYILAWVAFPLALLSGV 151
>gi|24430165 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 23 VFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHS-WDYGWSFCLAWGSFTCCMAASV 80
+F +L+GL M A +YT + +W +S + YG+++ LAW +F + + V
Sbjct: 101 IFQILAGLCVMSAAAIYT--------VRHPEWHLNSDYSYGFAYILAWVAFPLALLSGV 151
>gi|24430163 peripheral myelin protein 22 [Homo sapiens]
Length = 160
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 23 VFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHS-WDYGWSFCLAWGSFTCCMAASV 80
+F +L+GL M A +YT + +W +S + YG+++ LAW +F + + V
Sbjct: 101 IFQILAGLCVMSAAAIYT--------VRHPEWHLNSDYSYGFAYILAWVAFPLALLSGV 151
>gi|154350224 hypothetical protein LOC84923 isoform 2 [Homo sapiens]
Length = 186
Score = 29.3 bits (64), Expect = 1.8
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 109 TFIDPEAI-KYFRERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSA 159
+F P A+ + R R +R+G+EED HL + +R + P DSW S+
Sbjct: 60 SFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKR--SSRNPVFQDSWDTESS 109
>gi|81295809 pericentrin [Homo sapiens]
Length = 3336
Score = 28.5 bits (62), Expect = 3.1
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 8/40 (20%)
Query: 144 ARHQPHMADSWPRS--------SAQEAPELNRQCWVLGHW 175
+RHQ H A++ PR S+ +PE+ R+ W L W
Sbjct: 2200 SRHQSHTAEAGPRKSPVGMLDLSSWSSPEVLRKDWTLEPW 2239
>gi|55741661 hypothetical protein LOC57653 [Homo sapiens]
Length = 1646
Score = 28.1 bits (61), Expect = 4.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 77 AASVTTLNSYTKTVIEFRHKRKVFEQGYREEP--TFIDPEAIKYFRE----RMEKRDGSE 130
A + LNSY+ + ++ R++FEQ E F PEA + + ++ K+ GS+
Sbjct: 754 AIMLKELNSYSSALSQYFFVREIFEQNLAGEVIFKFRQPEAHEKPSQKRVKKLRKKQGSK 813
Query: 131 ED 132
ED
Sbjct: 814 ED 815
>gi|154350246 hypothetical protein LOC84923 isoform 1 [Homo sapiens]
Length = 207
Score = 28.1 bits (61), Expect = 4.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 109 TFIDPEAI-KYFRERMEKRDGSEEDFHLDCRHERYPARHQPHMADSW 154
+F P A+ + R R +R+G+EED HL + +R + P DSW
Sbjct: 60 SFHPPAAMSERLRPRKRRRNGNEEDNHLPPQTKR--SSRNPVFQDSW 104
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 27.7 bits (60), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 59 WDYGWSFCLAWGSF-TCCMAASVTTL 83
W+YG FC W S C+ AS+ TL
Sbjct: 124 WEYGSFFCELWTSVDVLCVTASIETL 149
>gi|5174405 voltage-dependent calcium channel gamma-2 subunit [Homo
sapiens]
Length = 323
Score = 27.7 bits (60), Expect = 5.4
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 21 AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASV 80
A +F V +GL ++ ++Y S D + +S+ YGWSF SF V
Sbjct: 138 AGIFFVSAGLSNIIGIIVYISANAGDPS--KSDSKKNSYSYGWSFYFGALSFIIAEMVGV 195
Query: 81 TTLNSYTKTVIEFRHKR 97
++ + RHK+
Sbjct: 196 LAVHMFID-----RHKQ 207
>gi|218563749 ArfGAP with coiled-coil, ankyrin repeat and PH domains
3 [Homo sapiens]
Length = 834
Score = 27.7 bits (60), Expect = 5.4
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 101 EQGYREEPTFIDPEAIKYFRERMEKRDGSEEDFHLDCRHERYPARHQPHMADSWPRSSAQ 160
++ R++ E ++ F+E ++ D ED L RH+PH + A
Sbjct: 100 QRSVRQQLQSFVKEDVRKFKETKKQFDKVREDLELSLVRNAQAPRHRPHEVE-----EAT 154
Query: 161 EAPELNRQCW 170
A L R+C+
Sbjct: 155 GALTLTRKCF 164
>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
Length = 1812
Score = 27.7 bits (60), Expect = 5.4
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 4 ELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHM 37
EL + +V LKLNAF A+ +V+S GM A +
Sbjct: 488 ELLFADHVSSSLKLNAFKALDSVISMTEGMEAFL 521
>gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens]
Length = 1147
Score = 27.7 bits (60), Expect = 5.4
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 4 ELFHSSNVIDGLKLNAFAAVFTVLSGLLGMVAHM 37
EL + +V LKLNAF A+ +V+S GM A +
Sbjct: 488 ELLFADHVSSSLKLNAFKALDSVISMTEGMEAFL 521
>gi|4505891 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3
precursor [Homo sapiens]
Length = 738
Score = 27.3 bits (59), Expect = 7.0
Identities = 8/11 (72%), Positives = 11/11 (100%)
Query: 146 HQPHMADSWPR 156
H+PH+ADSWP+
Sbjct: 339 HEPHIADSWPQ 349
>gi|7656950 voltage-dependent calcium channel gamma-5 subunit
isoform b [Homo sapiens]
Length = 296
Score = 27.3 bits (59), Expect = 7.0
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 21 AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH-SWDYGWSFCLAWGSFTCCMAAS 79
+ +F +LSGL +V ++Y + +D + ++ YGWSF A SF
Sbjct: 134 SGIFFILSGLSLVVGLVLYISSINDEMLNRTKDAETYFNYKYGWSFAFAAISFLLTEVKP 193
Query: 80 VT 81
VT
Sbjct: 194 VT 195
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 27.3 bits (59), Expect = 7.0
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 21 AAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPHSWDYGWSFCLAWGSFTCCMAASV 80
A + V +GL ++ ++Y ++ + + + YGWSF SF V
Sbjct: 162 AGILFVAAGLSNIIGVIVYISANAGEPGPKRDEEKKNHYSYGWSFYFGGLSFILAEVIGV 221
Query: 81 TTLNSY 86
+N Y
Sbjct: 222 LAVNIY 227
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,020,364
Number of Sequences: 37866
Number of extensions: 296136
Number of successful extensions: 962
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 947
Number of HSP's gapped (non-prelim): 28
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.