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Search of human proteins with 21361724
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361724 nuclear transport factor 2-like export factor 2
[Homo sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361724 nuclear transport factor 2-like export factor 2 [Hom... 409 e-115
gi|7019471 NTF2-like export factor 1 [Homo sapiens] 229 1e-60
gi|5031985 nuclear transport factor 2 [Homo sapiens] 45 3e-05
gi|17451119 PREDICTED: similar to nuclear transport factor 2 [Ho... 38 0.005
gi|169160905 PREDICTED: similar to nuclear transport factor 2 [H... 38 0.006
gi|88952306 PREDICTED: similar to nuclear transport factor 2 [Ho... 38 0.006
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 35 0.032
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 35 0.032
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro... 35 0.032
gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo... 30 1.3
gi|4502169 NEDD8 activating enzyme E1 subunit 1 isoform a [Homo ... 30 1.3
gi|169210350 PREDICTED: hypothetical protein [Homo sapiens] 29 2.3
gi|113426339 PREDICTED: hypothetical protein [Homo sapiens] 29 2.3
gi|113426005 PREDICTED: hypothetical protein [Homo sapiens] 29 2.3
gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo sapi... 28 3.9
gi|207450725 zinc finger protein 577 isoform b [Homo sapiens] 28 3.9
gi|207450723 zinc finger protein 577 isoform a [Homo sapiens] 28 3.9
gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens] 28 6.6
gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens] 28 6.6
gi|224548938 hypothetical protein LOC9711 isoform 1 [Homo sapiens] 28 6.6
gi|150456467 hypothetical protein LOC9711 isoform 2 [Homo sapiens] 28 6.6
gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo sa... 28 6.6
gi|114158664 hypothetical protein LOC343505 [Homo sapiens] 27 8.6
>gi|21361724 nuclear transport factor 2-like export factor 2 [Homo
sapiens]
Length = 197
Score = 409 bits (1052), Expect = e-115
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MRKYRSHWSQGDREGYQRRSNYYEGPHTSHSSPADRTREEVVTPTLPEHTATRSQMATSL 60
MRKYRSHWSQGDREGYQRRSNYYEGPHTSHSSPADRTREEVVTPTLPEHTATRSQMATSL
Sbjct: 1 MRKYRSHWSQGDREGYQRRSNYYEGPHTSHSSPADRTREEVVTPTLPEHTATRSQMATSL 60
Query: 61 DFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDT 120
DFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDT
Sbjct: 61 DFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDT 120
Query: 121 LPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNT 180
LPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNT
Sbjct: 121 LPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNT 180
Query: 181 VWKIASDCFRFQDWSSS 197
VWKIASDCFRFQDWSSS
Sbjct: 181 VWKIASDCFRFQDWSSS 197
>gi|7019471 NTF2-like export factor 1 [Homo sapiens]
Length = 140
Score = 229 bits (584), Expect = 1e-60
Identities = 104/138 (75%), Positives = 126/138 (91%)
Query: 59 SLDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFF 118
S+DFKTYVDQACRAAEEFVN+YY TMDKRRR L+RLY+ ATL+WNGNAVSG ++L+ FF
Sbjct: 3 SVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFF 62
Query: 119 DTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPN 178
+ LPSSEFQ++++DCQPVH++AT SQTTVLVV G+VKF+GNKQ FNQNF+LTAQ++P+
Sbjct: 63 EMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPS 122
Query: 179 NTVWKIASDCFRFQDWSS 196
NTVWKIASDCFRFQDW+S
Sbjct: 123 NTVWKIASDCFRFQDWAS 140
>gi|5031985 nuclear transport factor 2 [Homo sapiens]
Length = 127
Score = 45.4 bits (106), Expect = 3e-05
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 76 FVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQ--VNMLDC 133
F+ YY+ D R L +Y+D + L W G G A+ +LP + Q + D
Sbjct: 14 FIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDH 73
Query: 134 QPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFR 190
QP + + ++ + G +K D + F+Q FLL N W +D FR
Sbjct: 74 QPTPD------SCIISMVVGQLKADEDPIMGFHQMFLL----KNINDAWVCTNDMFR 120
>gi|17451119 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 126
Score = 38.1 bits (87), Expect = 0.005
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 80 YYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQ 139
YY+ D R L +Y+D + L W G A +LP + Q N L Q H+
Sbjct: 18 YYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQ-NSLTAQD-HQP 75
Query: 140 ATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRF 191
S ++ V G +K D + F+Q FLL N A+D FRF
Sbjct: 76 TPDS--CIIGVVVGQLKADEDPIKGFHQMFLL-----KNINDGFCANDMFRF 120
>gi|169160905 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 340
Score = 37.7 bits (86), Expect = 0.006
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 80 YYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQ 139
YY+ D R L +Y+D + L W G A +LP + Q N L Q H+
Sbjct: 232 YYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQ-NSLRAQD-HQP 289
Query: 140 ATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRF 191
S ++ V G +K D + F+Q FLL N A+D FRF
Sbjct: 290 TPDS--CIIGVVVGQLKADEDPIKGFHQMFLL-----KNINDGFCANDMFRF 334
>gi|88952306 PREDICTED: similar to nuclear transport factor 2 [Homo
sapiens]
Length = 126
Score = 37.7 bits (86), Expect = 0.006
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 80 YYETMDKRRRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQ 139
YY+ D R L +Y+D + L W G A +LP + Q N L Q H+
Sbjct: 18 YYQLFDNDRTQLGAIYIDASCLTWEVRQFQGKAAAVEKLSSLPFQKIQ-NSLRAQD-HQP 75
Query: 140 ATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNNTVWKIASDCFRF 191
S ++ V G +K D + F+Q FLL N A+D FRF
Sbjct: 76 TPDS--CIIGVVVGQLKADEDPIKGFHQMFLL-----KNINDGFCANDMFRF 120
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 35.4 bits (80), Expect = 0.032
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 75 EFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSG-----LDALNNFFDTLPSSEFQVN 129
EFV YY ++K L R Y ++ + G SG + N+ + S F
Sbjct: 14 EFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSEC 73
Query: 130 MLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQ-STPNNTVWKIASDC 188
+ V AT S V+V G + G + F Q F+L + S PN + + +D
Sbjct: 74 HTKIRHVDAHATLSD-GVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNK--FYVHNDM 130
Query: 189 FRFQD 193
FR++D
Sbjct: 131 FRYED 135
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 35.4 bits (80), Expect = 0.032
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 75 EFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSG-----LDALNNFFDTLPSSEFQVN 129
EFV YY ++K L R Y ++ + G SG + N+ + S F
Sbjct: 14 EFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSEC 73
Query: 130 MLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQ-STPNNTVWKIASDC 188
+ V AT S V+V G + G + F Q F+L + S PN + + +D
Sbjct: 74 HTKIRHVDAHATLSD-GVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNK--FYVHNDM 130
Query: 189 FRFQD 193
FR++D
Sbjct: 131 FRYED 135
>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform b [Homo sapiens]
Length = 449
Score = 35.4 bits (80), Expect = 0.032
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 75 EFVNIYYETMDKRRRALTRLYLDKATLIWNGNAVSG-----LDALNNFFDTLPSSEFQVN 129
EFV YY ++K L R Y ++ + G SG + N+ + S F
Sbjct: 14 EFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSEC 73
Query: 130 MLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLTAQ-STPNNTVWKIASDC 188
+ V AT S V+V G + G + F Q F+L + S PN + + +D
Sbjct: 74 HTKIRHVDAHATLSD-GVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNK--FYVHNDM 130
Query: 189 FRFQD 193
FR++D
Sbjct: 131 FRYED 135
>gi|66363686 NEDD8 activating enzyme E1 subunit 1 isoform b [Homo
sapiens]
Length = 528
Score = 30.0 bits (66), Expect = 1.3
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 102 IWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNK 161
I +GN VSG DA NNFF L S N + Q S + V N
Sbjct: 53 IIDGNQVSGEDAGNNFF--LQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 110
Query: 162 QHFFNQNFLLTAQSTPNNTVWKIA 185
FF + ++ A P +T ++A
Sbjct: 111 PSFFCRFTVVVATQLPESTSLRLA 134
>gi|4502169 NEDD8 activating enzyme E1 subunit 1 isoform a [Homo
sapiens]
Length = 534
Score = 30.0 bits (66), Expect = 1.3
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 102 IWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNK 161
I +GN VSG DA NNFF L S N + Q S + V N
Sbjct: 59 IIDGNQVSGEDAGNNFF--LQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDND 116
Query: 162 QHFFNQNFLLTAQSTPNNTVWKIA 185
FF + ++ A P +T ++A
Sbjct: 117 PSFFCRFTVVVATQLPESTSLRLA 140
>gi|169210350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 29.3 bits (64), Expect = 2.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 2 RKYRSHWSQGDREGYQRRSNYYEGPHTSH--SSPADRTREEVVTPTLPE-HTATRS 54
R+ R +G+RE + + + GP +H +P D EE P HTAT S
Sbjct: 45 RRTRRRERRGEREADEGEATSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATAS 100
>gi|113426339 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 29.3 bits (64), Expect = 2.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 2 RKYRSHWSQGDREGYQRRSNYYEGPHTSH--SSPADRTREEVVTPTLPE-HTATRS 54
R+ R +G+RE + + + GP +H +P D EE P HTAT S
Sbjct: 45 RRTRRRERRGEREADEGEATSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATAS 100
>gi|113426005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 29.3 bits (64), Expect = 2.3
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 2 RKYRSHWSQGDREGYQRRSNYYEGPHTSH--SSPADRTREEVVTPTLPE-HTATRS 54
R+ R +G+RE + + + GP +H +P D EE P HTAT S
Sbjct: 45 RRTRRRERRGEREADEGEATSFPGPCAAHVAGAPEDEDDEEQAVAAAPHAHTATAS 100
>gi|11138123 cholinergic receptor, nicotinic, alpha 10 [Homo
sapiens]
Length = 450
Score = 28.5 bits (62), Expect = 3.9
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 22/87 (25%)
Query: 84 MDKRRRALTRLYL------DKATLIWNGNAVSGLDALNNFFDTLPSS------EFQVNML 131
MD+R + LT LYL A L W+ NA GLDA+ +PSS N
Sbjct: 69 MDERNQVLT-LYLWIRQEWTDAYLRWDPNAYGGLDAIR-----IPSSLVWRPDIVLYNKA 122
Query: 132 DCQPVHEQATQSQTTVLVVTSGTVKFD 158
D QP + T V++ G V++D
Sbjct: 123 DAQP----PGSASTNVVLRHDGAVRWD 145
>gi|207450725 zinc finger protein 577 isoform b [Homo sapiens]
Length = 426
Score = 28.5 bits (62), Expect = 3.9
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 113 ALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLT 172
A+N+ PSS ++ + + EQ T + + + +SGT + +N ++
Sbjct: 322 AINSLTVEKPSSRSHTSLYMSELIQEQKTVNTVPIEMPSSGTPPLLNKSERLVGRNVVIV 381
Query: 173 AQSTPNNTVWKI 184
Q P N + +
Sbjct: 382 EQPFPRNQAFVV 393
>gi|207450723 zinc finger protein 577 isoform a [Homo sapiens]
Length = 485
Score = 28.5 bits (62), Expect = 3.9
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 113 ALNNFFDTLPSSEFQVNMLDCQPVHEQATQSQTTVLVVTSGTVKFDGNKQHFFNQNFLLT 172
A+N+ PSS ++ + + EQ T + + + +SGT + +N ++
Sbjct: 381 AINSLTVEKPSSRSHTSLYMSELIQEQKTVNTVPIEMPSSGTPPLLNKSERLVGRNVVIV 440
Query: 173 AQSTPNNTVWKI 184
Q P N + +
Sbjct: 441 EQPFPRNQAFVV 452
>gi|20357588 TBP-associated factor 1 isoform 2 [Homo sapiens]
Length = 1872
Score = 27.7 bits (60), Expect = 6.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 56 MATSLDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKAT 100
+A S+ + Q + A+E VN+ Y+T+ + LT+L D T
Sbjct: 1576 LANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICT 1620
>gi|20357585 TBP-associated factor 1 isoform 1 [Homo sapiens]
Length = 1893
Score = 27.7 bits (60), Expect = 6.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 56 MATSLDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKAT 100
+A S+ + Q + A+E VN+ Y+T+ + LT+L D T
Sbjct: 1597 LANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICT 1641
>gi|224548938 hypothetical protein LOC9711 isoform 1 [Homo sapiens]
Length = 927
Score = 27.7 bits (60), Expect = 6.6
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 88 RRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQ---ATQSQ 144
R+ + + Y D A L+ + + + L L P Q++ HE T+SQ
Sbjct: 86 RQYIRKFYTDAAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDASMFARKHESPLLVTKSQ 145
Query: 145 TTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNN 179
+ + +S + QH + +F QS PNN
Sbjct: 146 SLTALPSSTYTPPNSYAQHSYFGSFSSLHQSVPNN 180
>gi|150456467 hypothetical protein LOC9711 isoform 2 [Homo sapiens]
Length = 972
Score = 27.7 bits (60), Expect = 6.6
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 88 RRALTRLYLDKATLIWNGNAVSGLDALNNFFDTLPSSEFQVNMLDCQPVHEQ---ATQSQ 144
R+ + + Y D A L+ + + + L L P Q++ HE T+SQ
Sbjct: 146 RQYIRKFYTDAAFLLSDAHVTAMLQCLEAVEQNNPRLLAQIDASMFARKHESPLLVTKSQ 205
Query: 145 TTVLVVTSGTVKFDGNKQHFFNQNFLLTAQSTPNN 179
+ + +S + QH + +F QS PNN
Sbjct: 206 SLTALPSSTYTPPNSYAQHSYFGSFSSLHQSVPNN 240
>gi|24429572 TBP-associated factor RNA polymerase 1-like [Homo
sapiens]
Length = 1826
Score = 27.7 bits (60), Expect = 6.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 56 MATSLDFKTYVDQACRAAEEFVNIYYETMDKRRRALTRLYLDKAT 100
+A S+ + Q + A+E VNI Y+T+ + LT+L D T
Sbjct: 1595 LANSVKYNGPESQYTKTAQEIVNICYQTITEYDEHLTQLEKDICT 1639
>gi|114158664 hypothetical protein LOC343505 [Homo sapiens]
Length = 421
Score = 27.3 bits (59), Expect = 8.6
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 1 MRKYRSHWSQGDREGYQRRSNYYEGPHTSHSSPADRTREEVVTPTLPEHTATRSQMATSL 60
+R+Y+ +RE Q R EG SHS ++ + ++TP +H ++ Q
Sbjct: 112 LRQYKVLVHSQERELIQLREKLREGRDASHS--LNQHLQALLTP--DKHDNSQGQ----- 162
Query: 61 DFKTYVDQACRAAEEFVN 78
DF+ + + CR A V+
Sbjct: 163 DFREQLAEGCRLARHLVH 180
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.128 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,404,013
Number of Sequences: 37866
Number of extensions: 285840
Number of successful extensions: 788
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 23
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.