Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 113429310
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113429310 PREDICTED: hypothetical protein [Homo sapiens]
(69 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113429320 PREDICTED: hypothetical protein [Homo sapiens] 140 3e-34
gi|113429310 PREDICTED: hypothetical protein [Homo sapiens] 140 3e-34
gi|113429273 PREDICTED: hypothetical protein [Homo sapiens] 140 3e-34
gi|113429264 PREDICTED: hypothetical protein [Homo sapiens] 140 3e-34
gi|239757664 PREDICTED: similar to hCG2040019 [Homo sapiens] 88 1e-18
gi|153266907 gamma-glutamyltransferase 5 isoform c [Homo sapiens] 54 3e-08
gi|153266901 gamma-glutamyltransferase 5 isoform a [Homo sapiens] 54 3e-08
gi|153266885 gamma-glutamyltransferase 5 isoform b [Homo sapiens] 54 3e-08
gi|116256487 patatin-like phospholipase domain containing 6 [Hom... 30 0.41
gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo sap... 27 2.7
gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo sap... 27 2.7
gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens] 27 3.5
gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens] 27 4.5
gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens] 27 4.5
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 27 4.5
gi|110735443 delta-like 1 [Homo sapiens] 26 5.9
gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens] 26 5.9
gi|117938768 GNAS complex locus alex [Homo sapiens] 26 7.7
gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens] 26 7.7
gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens] 26 7.7
gi|61175227 ribonuclease, RNase A family, 10 (non-active) [Homo ... 26 7.7
>gi|113429320 PREDICTED: hypothetical protein [Homo sapiens]
Length = 69
Score = 140 bits (352), Expect = 3e-34
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG 60
MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG
Sbjct: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG 60
Query: 61 RKLHIFWFT 69
RKLHIFWFT
Sbjct: 61 RKLHIFWFT 69
>gi|113429310 PREDICTED: hypothetical protein [Homo sapiens]
Length = 69
Score = 140 bits (352), Expect = 3e-34
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG 60
MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG
Sbjct: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG 60
Query: 61 RKLHIFWFT 69
RKLHIFWFT
Sbjct: 61 RKLHIFWFT 69
>gi|113429273 PREDICTED: hypothetical protein [Homo sapiens]
Length = 69
Score = 140 bits (352), Expect = 3e-34
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG 60
MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG
Sbjct: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG 60
Query: 61 RKLHIFWFT 69
RKLHIFWFT
Sbjct: 61 RKLHIFWFT 69
>gi|113429264 PREDICTED: hypothetical protein [Homo sapiens]
Length = 69
Score = 140 bits (352), Expect = 3e-34
Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG 60
MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG
Sbjct: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG 60
Query: 61 RKLHIFWFT 69
RKLHIFWFT
Sbjct: 61 RKLHIFWFT 69
>gi|239757664 PREDICTED: similar to hCG2040019 [Homo sapiens]
Length = 645
Score = 88.2 bits (217), Expect = 1e-18
Identities = 49/57 (85%), Positives = 51/57 (89%), Gaps = 2/57 (3%)
Query: 2 AQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQIL 58
AQD AM LVLLGLGL ALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRS++IL
Sbjct: 162 AQDCRAMVGLVLLGLGL--ALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSARIL 216
>gi|153266907 gamma-glutamyltransferase 5 isoform c [Homo sapiens]
Length = 554
Score = 53.5 bits (127), Expect = 3e-08
Identities = 31/41 (75%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
Query: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPR 41
MA+ YGA LVLLGLGL ALAVIVLAVVLSRHQAP P+
Sbjct: 1 MARGYGATVSLVLLGLGL--ALAVIVLAVVLSRHQAPCGPQ 39
>gi|153266901 gamma-glutamyltransferase 5 isoform a [Homo sapiens]
Length = 587
Score = 53.5 bits (127), Expect = 3e-08
Identities = 31/41 (75%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
Query: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPR 41
MA+ YGA LVLLGLGL ALAVIVLAVVLSRHQAP P+
Sbjct: 1 MARGYGATVSLVLLGLGL--ALAVIVLAVVLSRHQAPCGPQ 39
>gi|153266885 gamma-glutamyltransferase 5 isoform b [Homo sapiens]
Length = 586
Score = 53.5 bits (127), Expect = 3e-08
Identities = 31/41 (75%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
Query: 1 MAQDYGAMGDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPR 41
MA+ YGA LVLLGLGL ALAVIVLAVVLSRHQAP P+
Sbjct: 1 MARGYGATVSLVLLGLGL--ALAVIVLAVVLSRHQAPCGPQ 39
>gi|116256487 patatin-like phospholipase domain containing 6 [Homo
sapiens]
Length = 1327
Score = 30.0 bits (66), Expect = 0.41
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 12 VLLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYGRKL 63
V++G G+ + + +++ +V+ R + P P P P R + YGRK+
Sbjct: 13 VMIGAGVAVVVTAVLILLVVRRLRVPKTPAP-DGPRYRFRKRDKVLFYGRKI 63
>gi|56549666 tyrosine kinase, non-receptor, 2 isoform 1 [Homo
sapiens]
Length = 1038
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 31 LSRHQAPFDPRPLPTPLLLLTP 52
L Q+P +P PLP PLLL P
Sbjct: 876 LREAQSPEEPTPLPVPLLLPPP 897
>gi|58331191 tyrosine kinase, non-receptor, 2 isoform 2 [Homo
sapiens]
Length = 1086
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 31 LSRHQAPFDPRPLPTPLLLLTP 52
L Q+P +P PLP PLLL P
Sbjct: 954 LREAQSPEEPTPLPVPLLLPPP 975
>gi|14269566 megakaryoblastic leukemia 1 protein [Homo sapiens]
Length = 931
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 28 AVVLSRHQAPFDPRPLPTPLLLLTPRSSQILYG 60
+VV+ + +P P+P P LLL P+ ++ G
Sbjct: 620 SVVVKQEALQPEPEPVPAPQLLLGPQGPSLIKG 652
>gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens]
Length = 1168
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 16 LGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLL 48
L L +A+ V++ AV+L+ H AP P+P LL
Sbjct: 152 LTLLMAVLVLLTAVLLAFHAAPARPQPAYVALL 184
>gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens]
Length = 1115
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 16 LGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLL 48
L L +A+ V++ AV+L+ H AP P+P LL
Sbjct: 152 LTLLMAVLVLLTAVLLAFHAAPARPQPAYVALL 184
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 9 GDLVLLGLGLGLALAVIVLAVVLSRHQAPFDPRP---LPTPLLLLTPR 53
G + + GLG + V V+L R P P+P LP L LTP+
Sbjct: 322 GQPLAVAPGLGSSPLVPAPNVILHRTPTPIQPKPAGVLPPKLYQLTPK 369
>gi|110735443 delta-like 1 [Homo sapiens]
Length = 723
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 9 GDLVLLGLGLGLALAVIVLAVVLSRHQAPFDP 40
G +++L L LG A V+ + + L +H+ P DP
Sbjct: 551 GVILVLMLLLGCAAVVVCVRLRLQKHRPPADP 582
>gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens]
Length = 241
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 13 LLGLGLGLALAVIVLAVVLSRHQAPFDPRPLP--TPLLLLTPR 53
LLG GL L L + L L R P RPLP PL+ P+
Sbjct: 147 LLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRFAPLVKTEPQ 189
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 37 PFDPRPLPTPLLLLTPRSSQILYGRKLHI 65
P P+P+PTP LTP+ Q + GR L +
Sbjct: 384 PLTPQPIPTPGRPLTPQPIQ-MPGRPLRL 411
>gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens]
Length = 222
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 13 LLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSS 55
LLG GL L L + L L R P RPLP L P SS
Sbjct: 147 LLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPR-FALSPPHSS 188
>gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens]
Length = 237
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/43 (44%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 13 LLGLGLGLALAVIVLAVVLSRHQAPFDPRPLPTPLLLLTPRSS 55
LLG GL L L + L L R P RPLP L P SS
Sbjct: 147 LLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPR-FALSPPHSS 188
>gi|61175227 ribonuclease, RNase A family, 10 (non-active) [Homo
sapiens]
Length = 216
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 11 LVLLGLGLGLALAVIVLAVVLSRHQAPFD 39
++LLGLG+GL L + + VL P +
Sbjct: 14 MLLLGLGMGLGLGLHMATAVLEESDQPLN 42
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.147 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,788,772
Number of Sequences: 37866
Number of extensions: 113645
Number of successful extensions: 610
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 24
length of query: 69
length of database: 18,247,518
effective HSP length: 42
effective length of query: 27
effective length of database: 16,657,146
effective search space: 449742942
effective search space used: 449742942
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.