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Search of human proteins with 21359969
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21359969 polymerase (RNA) III (DNA directed) polypeptide C
(62kD) [Homo sapiens]
(534 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21359969 polymerase (RNA) III (DNA directed) polypeptide C (6... 1046 0.0
gi|38788260 bromodomain PHD finger transcription factor isoform ... 37 0.059
gi|38788274 bromodomain PHD finger transcription factor isoform ... 37 0.059
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 36 0.077
gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens] 36 0.077
gi|34577114 cytomatrix protein p110 [Homo sapiens] 36 0.10
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 34 0.29
gi|42718017 retinoblastoma binding protein 8 isoform b [Homo sap... 33 0.50
gi|42718015 retinoblastoma binding protein 8 isoform a [Homo sap... 33 0.50
gi|4506441 retinoblastoma binding protein 8 isoform a [Homo sapi... 33 0.50
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 33 0.50
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 33 0.85
gi|110611218 ribosome binding protein 1 [Homo sapiens] 33 0.85
gi|110611220 ribosome binding protein 1 [Homo sapiens] 33 0.85
gi|195947369 junction-mediating and regulatory protein [Homo sap... 33 0.85
gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens] 32 1.1
gi|53759148 retinoblastoma binding protein 5 [Homo sapiens] 32 1.1
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 32 1.9
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 32 1.9
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 32 1.9
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 32 1.9
gi|116812614 glycerol-3-phosphate acyltransferase 2, mitochondri... 31 2.5
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 31 2.5
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 31 2.5
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 31 2.5
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 31 2.5
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 31 2.5
gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens] 31 2.5
gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens] 31 2.5
gi|83716024 kinesin family member 21B [Homo sapiens] 31 2.5
>gi|21359969 polymerase (RNA) III (DNA directed) polypeptide C
(62kD) [Homo sapiens]
Length = 534
Score = 1046 bits (2706), Expect = 0.0
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH
Sbjct: 1 MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60
Query: 61 NLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSA 120
NLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSA
Sbjct: 61 NLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSA 120
Query: 121 VVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTL 180
VVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTL
Sbjct: 121 VVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTL 180
Query: 181 VINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLD 240
VINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLD
Sbjct: 181 VINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLD 240
Query: 241 RFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVG 300
RFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVG
Sbjct: 241 RFHQHFRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVG 300
Query: 301 YNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGS 360
YNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGS
Sbjct: 301 YNISKQVLDQYLTLLADDPLEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGS 360
Query: 361 RCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRT 420
RCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRT
Sbjct: 361 RCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRT 420
Query: 421 FYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAE 480
FYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAE
Sbjct: 421 FYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAE 480
Query: 481 EAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIECTMKRQ 534
EAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIECTMKRQ
Sbjct: 481 EAQLQEIEEMITAPERQQLETLKRNVNKLDASEIQVDETIFLLESYIECTMKRQ 534
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 36.6 bits (83), Expect = 0.059
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 160 CPSVPTTENSDPGPPP-PAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRP 218
CP V + P PPP P P + + P L + KR+R ++D++ + K K+
Sbjct: 2653 CPPVTPAPPAPPAPPPSPPPPPAVQHTGLLSTPTLPAASQ-KRKREEEKDSSSKSK-KKK 2710
Query: 219 KYTTDNKEPIPDDGIY 234
+T +KE D +Y
Sbjct: 2711 MISTTSKETKKDTKLY 2726
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 36.6 bits (83), Expect = 0.059
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 160 CPSVPTTENSDPGPPP-PAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRP 218
CP V + P PPP P P + + P L + KR+R ++D++ + K K+
Sbjct: 2670 CPPVTPAPPAPPAPPPSPPPPPAVQHTGLLSTPTLPAASQ-KRKREEEKDSSSKSK-KKK 2727
Query: 219 KYTTDNKEPIPDDGIY 234
+T +KE D +Y
Sbjct: 2728 MISTTSKETKKDTKLY 2743
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 36.2 bits (82), Expect = 0.077
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 420 TFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRV------EAIIAS 473
T L + +SA + L +CYK I ++ E+ QFET+ ++ + Q++ A+++
Sbjct: 2499 TRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALVSQ 2558
Query: 474 MQATGAEEAQ--LQEIEEMITAPERQQLETLKRNVNKLDASEIQVD 517
+Q +E Q+ + + + PER ++ N+N+L E+ D
Sbjct: 2559 IQLEAVQEYAKFCQDNQTISSEPERTNIQ----NLNQLREDELGSD 2600
>gi|22538393 A-kinase anchor protein 9 isoform 3 [Homo sapiens]
Length = 3899
Score = 36.2 bits (82), Expect = 0.077
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 420 TFYLYTVNILSAARMLLHRCYKSIANLIERRQFETKENKRLLEKSQRV------EAIIAS 473
T L + +SA + L +CYK I ++ E+ QFET+ ++ + Q++ A+++
Sbjct: 2491 TRLLQLESTVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALVSQ 2550
Query: 474 MQATGAEEAQ--LQEIEEMITAPERQQLETLKRNVNKLDASEIQVD 517
+Q +E Q+ + + + PER ++ N+N+L E+ D
Sbjct: 2551 IQLEAVQEYAKFCQDNQTISSEPERTNIQ----NLNQLREDELGSD 2592
>gi|34577114 cytomatrix protein p110 [Homo sapiens]
Length = 957
Score = 35.8 bits (81), Expect = 0.10
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
Query: 441 KSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPE--RQQ 498
K +ANL +Q E K+N +LLE+ +R E + A+ +Q +IEE++ A E RQ+
Sbjct: 763 KKVANLKHNQQLEKKKNAQLLEEVRRREDSM-------ADNSQHLQIEELMNALEKTRQE 815
Query: 499 LETLK 503
L+ K
Sbjct: 816 LDATK 820
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 34.3 bits (77), Expect = 0.29
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 161 PSVPTTENSDPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKY 220
PS P + + PG P + E + L+ K + G KR SD+D P AKRP
Sbjct: 794 PSTP--QQAPPGQPQQGTFVAHKEIKLTLLNKAADKGSRKRYEPSDKDRQSPPPAKRPNT 851
Query: 221 TTD 223
+ D
Sbjct: 852 SPD 854
>gi|42718017 retinoblastoma binding protein 8 isoform b [Homo
sapiens]
Length = 867
Score = 33.5 bits (75), Expect = 0.50
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 186 DMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQH 245
D +L P SL G+ +R+ ++E++ E + + +N P P D +
Sbjct: 431 DKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQF----------S 480
Query: 246 FRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISK 305
++ + D+ S+ I R S+ + +S F Q ++ E +++P G++ S+
Sbjct: 481 MNGDCVMDKPLDLSDRFSA-IQRQ--EKSQGSETSKNKFRQ-VTLYEALKTIPKGFSSSR 536
Query: 306 QVLDQYLTLLADDPLE 321
+ D TL D P E
Sbjct: 537 KASDGNCTLPKDSPGE 552
>gi|42718015 retinoblastoma binding protein 8 isoform a [Homo
sapiens]
Length = 897
Score = 33.5 bits (75), Expect = 0.50
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 186 DMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQH 245
D +L P SL G+ +R+ ++E++ E + + +N P P D +
Sbjct: 431 DKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQF----------S 480
Query: 246 FRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISK 305
++ + D+ S+ I R S+ + +S F Q ++ E +++P G++ S+
Sbjct: 481 MNGDCVMDKPLDLSDRFSA-IQRQ--EKSQGSETSKNKFRQ-VTLYEALKTIPKGFSSSR 536
Query: 306 QVLDQYLTLLADDPLE 321
+ D TL D P E
Sbjct: 537 KASDGNCTLPKDSPGE 552
>gi|4506441 retinoblastoma binding protein 8 isoform a [Homo
sapiens]
Length = 897
Score = 33.5 bits (75), Expect = 0.50
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 186 DMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQH 245
D +L P SL G+ +R+ ++E++ E + + +N P P D +
Sbjct: 431 DKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQF----------S 480
Query: 246 FRDQAIVSAVANRMDQTSSEIVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISK 305
++ + D+ S+ I R S+ + +S F Q ++ E +++P G++ S+
Sbjct: 481 MNGDCVMDKPLDLSDRFSA-IQRQ--EKSQGSETSKNKFRQ-VTLYEALKTIPKGFSSSR 536
Query: 306 QVLDQYLTLLADDPLE 321
+ D TL D P E
Sbjct: 537 KASDGNCTLPKDSPGE 552
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 33.5 bits (75), Expect = 0.50
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 153 DTHFVQRCPSVPTTENSDPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGE 212
D H C P P PPP P ++ D+ L+P S +G KR+R + +
Sbjct: 63 DRHSPPGCHLFPPPPPPPPPLPPPPPPPPPDKDDIRLLP--SALGVKKRKRGPKKQKENK 120
Query: 213 PKAKRPKYTTDNKE 226
P R + D++E
Sbjct: 121 PGKPRKRKKRDSEE 134
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 32.7 bits (73), Expect = 0.85
Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 126 ADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTLVI--- 182
A L+ M+D D+ + R AD V+ PS T E+ P PPP P L +
Sbjct: 563 AQMLSFVMDDP---DFESEGSDTQRRADDFPVRDDPSDVTDEDEGPAEPPPPPKLPLPAF 619
Query: 183 ---NEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKE 226
N+ D++ L L G + S + P ++ K KE
Sbjct: 620 RLKNDSDLF---GLGLEEAGPKESSEEGKEGKTPSKEKKKKKKKGKE 663
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 32.7 bits (73), Expect = 0.85
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 441 KSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLE 500
+ ++ L + Q EN +L E+ + +EA++ + QA A++ Q + E ++ +L+
Sbjct: 501 EELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAE---ADQQQTRLK 557
Query: 501 TLKRNVNKLDASEIQVDETI 520
L+ V+ L+ I++ E +
Sbjct: 558 ELESQVSGLEKEAIELREAV 577
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 32.7 bits (73), Expect = 0.85
Identities = 19/80 (23%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 441 KSIANLIERRQFETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLE 500
+ ++ L + Q EN +L E+ + +EA++ + QA A++ Q + E ++ +L+
Sbjct: 501 EELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAE---ADQQQTRLK 557
Query: 501 TLKRNVNKLDASEIQVDETI 520
L+ V+ L+ I++ E +
Sbjct: 558 ELESQVSGLEKEAIELREAV 577
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 32.7 bits (73), Expect = 0.85
Identities = 50/215 (23%), Positives = 75/215 (34%), Gaps = 61/215 (28%)
Query: 161 PSVPTTENSDPGPPPPAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAGEPKAKRPKY 220
P PT P PPPP P P L + +D+ E K
Sbjct: 806 PLPPTPPPPPPPPPPPPP------------PPLPVA----------KDSGPETLEKDLPR 843
Query: 221 TTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSA---------------VANRMDQTSSE 265
N++ IP A+L F +VSA V++ MD+ +
Sbjct: 844 KEGNEKRIPKSASAPSAHL------FDSSQLVSARKKLRKTAEGLQRRRVSSPMDEVLAS 897
Query: 266 IVRTMLRMSEITTSSSAPFTQPLSSNEIFRSLPVGY---NISKQVLDQYLTLLAD-DPLE 321
+ R + ++ + PF SN I + G + K VL + TLL D DPL
Sbjct: 898 LKRGSFHLKKVEQRTLPPFPDEDDSNNILAQIRKGVKLKKVQKDVLRESFTLLPDTDPL- 956
Query: 322 FVGKSGDSGGGMYVINLHKALASLATATLESVVQE 356
++H+AL + A+ ES +E
Sbjct: 957 -------------TRSIHEALRRIKEASPESEDEE 978
>gi|41281981 toll-like receptor adaptor molecule 1 [Homo sapiens]
Length = 712
Score = 32.3 bits (72), Expect = 1.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 160 CPSVPTTENSDPGPPPPAPT 179
CP PTT + P PPPP P+
Sbjct: 349 CPPTPTTPETSPPPPPPPPS 368
>gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]
Length = 538
Score = 32.3 bits (72), Expect = 1.1
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 26/104 (25%)
Query: 131 ETMEDGKTMDYAEVSNTFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTLVINEKDMYLV 190
E +ED K + Y ++ P V E + GPPP A + ++
Sbjct: 391 EELEDSKALLYLPIA---------------PEVEDPEENPYGPPPDAVQTSLMDEG---- 431
Query: 191 PKLSLIGKGKRRRSSDEDAAGEPKAKRPKYTTDNKEPIPDDGIY 234
+++R S D + PK K+PK T + +P+D ++
Sbjct: 432 ------ASSEKKRQSSADGSQPPK-KKPKTTNIELQGVPNDEVH 468
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 31.6 bits (70), Expect = 1.9
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 449 RRQFETKENKRLLEKSQRVEAIIAS-----MQATGAEEAQLQEIEEMITAPERQQLETLK 503
R+Q E ++NK L K +E + S + A A+ AQL+E E ++ ++LK
Sbjct: 1787 RQQLE-RQNKELRSKLHEMEGAVKSKFKSTIAALEAKIAQLEEQVEQEAREKQAATKSLK 1845
Query: 504 RNVNKLDASEIQVDETIFLLESYIE 528
+ KL +QV++ + E Y E
Sbjct: 1846 QKDKKLKEILLQVEDERKMAEQYKE 1870
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 31.6 bits (70), Expect = 1.9
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 449 RRQFETKENKRLLEKSQRVEAIIAS-----MQATGAEEAQLQEIEEMITAPERQQLETLK 503
R+Q E ++NK L K +E + S + A A+ AQL+E E ++ ++LK
Sbjct: 1794 RQQLE-RQNKELRSKLHEMEGAVKSKFKSTIAALEAKIAQLEEQVEQEAREKQAATKSLK 1852
Query: 504 RNVNKLDASEIQVDETIFLLESYIE 528
+ KL +QV++ + E Y E
Sbjct: 1853 QKDKKLKEILLQVEDERKMAEQYKE 1877
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 31.6 bits (70), Expect = 1.9
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 449 RRQFETKENKRLLEKSQRVEAIIAS-----MQATGAEEAQLQEIEEMITAPERQQLETLK 503
R+Q E ++NK L K +E + S + A A+ AQL+E E ++ ++LK
Sbjct: 1794 RQQLE-RQNKELRSKLHEMEGAVKSKFKSTIAALEAKIAQLEEQVEQEAREKQAATKSLK 1852
Query: 504 RNVNKLDASEIQVDETIFLLESYIE 528
+ KL +QV++ + E Y E
Sbjct: 1853 QKDKKLKEILLQVEDERKMAEQYKE 1877
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 31.6 bits (70), Expect = 1.9
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 449 RRQFETKENKRLLEKSQRVEAIIAS-----MQATGAEEAQLQEIEEMITAPERQQLETLK 503
R+Q E ++NK L K +E + S + A A+ AQL+E E ++ ++LK
Sbjct: 1787 RQQLE-RQNKELRSKLHEMEGAVKSKFKSTIAALEAKIAQLEEQVEQEAREKQAATKSLK 1845
Query: 504 RNVNKLDASEIQVDETIFLLESYIE 528
+ KL +QV++ + E Y E
Sbjct: 1846 QKDKKLKEILLQVEDERKMAEQYKE 1870
>gi|116812614 glycerol-3-phosphate acyltransferase 2, mitochondrial
[Homo sapiens]
Length = 795
Score = 31.2 bits (69), Expect = 2.5
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 147 TFVRLADTHFVQRCPSVPTTENSDPGPPPPAPTLVINEKDMYLVPKLS 194
T +L + +C +VP TE P P L + E+D LV +LS
Sbjct: 400 TLEQLLQPIVLGQCTAVPDTEKEQEWTPITGPLLALKEEDQLLVRRLS 447
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 31.2 bits (69), Expect = 2.5
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 449 RRQFETKENKRLLEKSQRVEAII-----ASMQATGAEEAQLQEIEEMITAPERQQLETLK 503
R+Q E ++NK L K Q +E + AS+ A A+ AQL+E + T + + ++
Sbjct: 1780 RQQLE-RQNKELKVKLQEMEGTVKSKYKASITALEAKIAQLEEQLDNETKERQAACKQVR 1838
Query: 504 RNVNKLDASEIQVDETIFLLESY 526
R KL +QVD+ E Y
Sbjct: 1839 RTEKKLKDVLLQVDDERRNAEQY 1861
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 31.2 bits (69), Expect = 2.5
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)
Query: 340 KALASLATATLE-----SVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDM 394
+ + +L TA E S ++E S+ + +L +K+ +E+K AM+P + +
Sbjct: 738 QVITTLRTAAKEMEEKISNLKEHLASKEVEVAKL--EKQLLEEKAAMTDAMVPRSSYEKL 795
Query: 395 LYKMLSENFM---SLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQ 451
+ SE + L+E K + S V I S + R ++I L++ ++
Sbjct: 796 QSSLESEVSVLASKLKESVKEKEKVHSEV-----VQIRSEVSQV-KREKENIQTLLKSKE 849
Query: 452 FETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKL 509
E E LL+K Q+ + +A M+ ++L+E ++ +++ LK +N L
Sbjct: 850 QEVNE---LLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSL 904
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 31.2 bits (69), Expect = 2.5
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)
Query: 340 KALASLATATLE-----SVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDM 394
+ + +L TA E S ++E S+ + +L +K+ +E+K AM+P + +
Sbjct: 727 QVITTLRTAAKEMEEKISNLKEHLASKEVEVAKL--EKQLLEEKAAMTDAMVPRSSYEKL 784
Query: 395 LYKMLSENFM---SLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQ 451
+ SE + L+E K + S V I S + R ++I L++ ++
Sbjct: 785 QSSLESEVSVLASKLKESVKEKEKVHSEV-----VQIRSEVSQV-KREKENIQTLLKSKE 838
Query: 452 FETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKL 509
E E LL+K Q+ + +A M+ ++L+E ++ +++ LK +N L
Sbjct: 839 QEVNE---LLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSL 893
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 31.2 bits (69), Expect = 2.5
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)
Query: 340 KALASLATATLE-----SVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDM 394
+ + +L TA E S ++E S+ + +L +K+ +E+K AM+P + +
Sbjct: 706 QVITTLRTAAKEMEEKISNLKEHLASKEVEVAKL--EKQLLEEKAAMTDAMVPRSSYEKL 763
Query: 395 LYKMLSENFM---SLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQ 451
+ SE + L+E K + S V I S + R ++I L++ ++
Sbjct: 764 QSSLESEVSVLASKLKESVKEKEKVHSEV-----VQIRSEVSQV-KREKENIQTLLKSKE 817
Query: 452 FETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKL 509
E E LL+K Q+ + +A M+ ++L+E ++ +++ LK +N L
Sbjct: 818 QEVNE---LLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSL 872
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 31.2 bits (69), Expect = 2.5
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)
Query: 340 KALASLATATLE-----SVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDM 394
+ + +L TA E S ++E S+ + +L +K+ +E+K AM+P + +
Sbjct: 735 QVITTLRTAAKEMEEKISNLKEHLASKEVEVAKL--EKQLLEEKAAMTDAMVPRSSYEKL 792
Query: 395 LYKMLSENFM---SLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQ 451
+ SE + L+E K + S V I S + R ++I L++ ++
Sbjct: 793 QSSLESEVSVLASKLKESVKEKEKVHSEV-----VQIRSEVSQV-KREKENIQTLLKSKE 846
Query: 452 FETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKL 509
E E LL+K Q+ + +A M+ ++L+E ++ +++ LK +N L
Sbjct: 847 QEVNE---LLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSL 901
>gi|224809470 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 31.2 bits (69), Expect = 2.5
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)
Query: 340 KALASLATATLE-----SVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDM 394
+ + +L TA E S ++E S+ + +L +K+ +E+K AM+P + +
Sbjct: 735 QVITTLRTAAKEMEEKISNLKEHLASKEVEVAKL--EKQLLEEKAAMTDAMVPRSSYEKL 792
Query: 395 LYKMLSENFM---SLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQ 451
+ SE + L+E K + S V I S + R ++I L++ ++
Sbjct: 793 QSSLESEVSVLASKLKESVKEKEKVHSEV-----VQIRSEVSQV-KREKENIQTLLKSKE 846
Query: 452 FETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKL 509
E E LL+K Q+ + +A M+ ++L+E ++ +++ LK +N L
Sbjct: 847 QEVNE---LLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSL 901
>gi|224809468 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 31.2 bits (69), Expect = 2.5
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)
Query: 340 KALASLATATLE-----SVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDM 394
+ + +L TA E S ++E S+ + +L +K+ +E+K AM+P + +
Sbjct: 735 QVITTLRTAAKEMEEKISNLKEHLASKEVEVAKL--EKQLLEEKAAMTDAMVPRSSYEKL 792
Query: 395 LYKMLSENFM---SLQEIPKTPDHAPSRTFYLYTVNILSAARMLLHRCYKSIANLIERRQ 451
+ SE + L+E K + S V I S + R ++I L++ ++
Sbjct: 793 QSSLESEVSVLASKLKESVKEKEKVHSEV-----VQIRSEVSQV-KREKENIQTLLKSKE 846
Query: 452 FETKENKRLLEKSQRVEAIIASMQATGAEEAQLQEIEEMITAPERQQLETLKRNVNKL 509
E E LL+K Q+ + +A M+ ++L+E ++ +++ LK +N L
Sbjct: 847 QEVNE---LLQKFQQAQEELAEMKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSL 901
>gi|83716024 kinesin family member 21B [Homo sapiens]
Length = 1624
Score = 31.2 bits (69), Expect = 2.5
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 447 IERRQFETKENKRLLEKSQRVEAIIASMQATGAE--EAQLQEIEEMITAPERQQLETLKR 504
+++ Q KE+ RLL+ R E + +QA AE +A++ +++M +R++L KR
Sbjct: 721 LQKLQAAQKEHARLLKNQSRYERELKKLQAEVAEMKKAKVALMKQMREEQQRRRLVETKR 780
Query: 505 N 505
N
Sbjct: 781 N 781
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,083,138
Number of Sequences: 37866
Number of extensions: 867146
Number of successful extensions: 4950
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 4852
Number of HSP's gapped (non-prelim): 140
length of query: 534
length of database: 18,247,518
effective HSP length: 107
effective length of query: 427
effective length of database: 14,195,856
effective search space: 6061630512
effective search space used: 6061630512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.