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Search of human proteins with 212720946
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|212720946 BET3 like [Homo sapiens]
(181 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|212720946 BET3 like [Homo sapiens] 368 e-102
gi|7656926 trafficking protein particle complex 3 [Homo sapiens] 223 5e-59
gi|118600991 trafficking protein particle complex 6B isoform 1 [... 36 0.016
gi|13129120 trafficking protein particle complex 6A [Homo sapiens] 28 3.3
gi|4507445 transcription factor AP-2 gamma [Homo sapiens] 28 3.3
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 28 3.3
gi|116063562 FERM domain containing 4A [Homo sapiens] 28 3.3
gi|239754759 PREDICTED: similar to zinc finger protein 30 [Homo ... 28 5.6
gi|239749287 PREDICTED: hypothetical protein XP_002346980 [Homo ... 28 5.6
gi|239743377 PREDICTED: hypothetical protein XP_002342831 [Homo ... 28 5.6
gi|239509071 PREDICTED: similar to zinc finger protein 30 [Homo ... 28 5.6
gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens] 27 7.3
gi|154800467 lung cancer-related protein 8 isoform b [Homo sapiens] 27 7.3
gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens] 27 7.3
gi|110578649 cache domain containing 1 [Homo sapiens] 27 9.6
gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens] 27 9.6
gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens] 27 9.6
>gi|212720946 BET3 like [Homo sapiens]
Length = 181
Score = 368 bits (945), Expect = e-102
Identities = 181/181 (100%), Positives = 181/181 (100%)
Query: 1 MSRPAHRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFL 60
MSRPAHRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFL
Sbjct: 1 MSRPAHRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFL 60
Query: 61 ARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELP 120
ARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELP
Sbjct: 61 ARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELP 120
Query: 121 AGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEKKYRGK 180
AGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEKKYRGK
Sbjct: 121 AGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEKKYRGK 180
Query: 181 K 181
K
Sbjct: 181 K 181
>gi|7656926 trafficking protein particle complex 3 [Homo sapiens]
Length = 180
Score = 223 bits (569), Expect = 5e-59
Identities = 112/181 (61%), Positives = 140/181 (77%), Gaps = 1/181 (0%)
Query: 1 MSRPAHRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFL 60
MSR A+R E K++ +LF LTYGALV QLCKDYE DEDVN+ LDKMG+ IG RL+EDFL
Sbjct: 1 MSRQANRGTESKKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFL 60
Query: 61 ARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELP 120
ARS VGRCH + E D+IA+VAFKMYLGITPS+T + + +EFSLILE NPLV+FV ELP
Sbjct: 61 ARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFV-ELP 119
Query: 121 AGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEKKYRGK 180
SSL Y NLLCG++RGALEMV +A + F+QD LKGD VTEI + F+++ ++ G+
Sbjct: 120 DNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLPAGE 179
Query: 181 K 181
+
Sbjct: 180 E 180
>gi|118600991 trafficking protein particle complex 6B isoform 1
[Homo sapiens]
Length = 158
Score = 36.2 bits (82), Expect = 0.016
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Query: 18 LFVLTYGALVAQLCKDYEKDEDVN----QYLDKMGYGIGTRLVEDFLARSCVGRCHSYSE 73
LF+L + +V+ + K E+ E N L+ MG+ +G L+E F + + +
Sbjct: 6 LFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTA-----RFKD 60
Query: 74 IIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSL----CYC 129
+DI+ + + + N + ++ +L+ N + ++ AG+ L Y
Sbjct: 61 ELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKF-RLLTQMSAGKQYLEHASKYL 119
Query: 130 NLLCGIIRGALEMVHLAADVT 150
CG+IRG L + + + VT
Sbjct: 120 AFTCGLIRGGLSNLGIKSIVT 140
>gi|13129120 trafficking protein particle complex 6A [Homo sapiens]
Length = 173
Score = 28.5 bits (62), Expect = 3.3
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 24/114 (21%)
Query: 46 KMGYGIGTRLVEDFLARSCVGRCHSYSEIIDIIAQVAFKMYLGI----TPSVTCNNSSK- 100
++G +G RL + LA + E +D++ + +++ + S+ N+
Sbjct: 57 RVGQALGERLPRETLA---------FREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTY 107
Query: 101 ----NEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAADVT 150
N F L+L ++++EE P + CG++RGAL + + + VT
Sbjct: 108 VLQDNSFPLLLPMASGLQYLEEAPK------FLAFTCGLLRGALYTLGIESVVT 155
>gi|4507445 transcription factor AP-2 gamma [Homo sapiens]
Length = 450
Score = 28.5 bits (62), Expect = 3.3
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 119 LPAGRSSLCYCNLLCGIIRGALEMVHLAADVTFL 152
LPAGR + LL ++ G E VHLA D ++
Sbjct: 289 LPAGRRKAAHVTLLTSLVEG--EAVHLARDFAYV 320
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 28.5 bits (62), Expect = 3.3
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 6 HRRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNQ 42
H + H + DL+ +G + +CKDY D+D+ Q
Sbjct: 266 HAETKQHHLAVDLY---HGVIYCFMCKDYVYDKDIEQ 299
>gi|116063562 FERM domain containing 4A [Homo sapiens]
Length = 1039
Score = 28.5 bits (62), Expect = 3.3
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 40 VNQYLDKMGYGIGTRLVEDFL--ARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNN 97
V Y++ + Y +E F A+SC+ Y E+ID+ ++V F++ I +
Sbjct: 99 VRFYIESISYLKDNATIELFFLNAKSCI-----YKELIDVDSEVVFELASYILQEAKGDF 153
Query: 98 SSKNEFSLILEKNPLV--EFVEELPAGRSSLCYC 129
SS L+K P + + ++E P SL YC
Sbjct: 154 SSNEVVRSDLKKLPALPTQALKEHP----SLAYC 183
>gi|239754759 PREDICTED: similar to zinc finger protein 30 [Homo
sapiens]
Length = 546
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 88 GITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAA 147
G +P+ ++ + E ++ P++ ++ E P GR S+ L G A +M H +
Sbjct: 381 GRSPTSCGDSQAMLEPGEVVVPGPVIRWLPEEPEGRRSVAGGRALVGRRPAASKMYHCSE 440
Query: 148 DVTFLQDR 155
+ F Q R
Sbjct: 441 CLRFFQQR 448
>gi|239749287 PREDICTED: hypothetical protein XP_002346980 [Homo
sapiens]
Length = 546
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 88 GITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAA 147
G +P+ ++ + E ++ P++ ++ E P GR S+ L G A +M H +
Sbjct: 381 GRSPTSCGDSQAMLEPGEVVVPGPVIRWLPEEPEGRRSVAGGRALVGRRPAASKMYHCSE 440
Query: 148 DVTFLQDR 155
+ F Q R
Sbjct: 441 CLRFFQQR 448
>gi|239743377 PREDICTED: hypothetical protein XP_002342831 [Homo
sapiens]
Length = 546
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 88 GITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAA 147
G +P+ ++ + E ++ P++ ++ E P GR S+ L G A +M H +
Sbjct: 381 GRSPTSCGDSQAMLEPGEVVVPGPVIRWLPEEPEGRRSVAGGRALVGRRPAASKMYHCSE 440
Query: 148 DVTFLQDR 155
+ F Q R
Sbjct: 441 CLRFFQQR 448
>gi|239509071 PREDICTED: similar to zinc finger protein 30 [Homo
sapiens]
Length = 546
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 88 GITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAA 147
G +P+ ++ + E ++ P++ ++ E P GR S+ L G A +M H +
Sbjct: 381 GRSPTSCGDSQAMLEPGEVVVPGPVIRWLPEEPEGRRSVAGGRALVGRRPAASKMYHCSE 440
Query: 148 DVTFLQDR 155
+ F Q R
Sbjct: 441 CLRFFQQR 448
>gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens]
Length = 583
Score = 27.3 bits (59), Expect = 7.3
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 80 QVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCY-----CNLLCG 134
Q +FKM P T +K +F + +P E ++LP S C +LL G
Sbjct: 117 QPSFKMLKNTKPMTTFQEETKAQFYASEKTSPKRELAKDLPKSGESRCNPSEAGASLLVG 176
Query: 135 IIRGAL 140
I +L
Sbjct: 177 SIEPSL 182
>gi|154800467 lung cancer-related protein 8 isoform b [Homo sapiens]
Length = 573
Score = 27.3 bits (59), Expect = 7.3
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 80 QVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCY-----CNLLCG 134
Q +FKM P T +K +F + +P E ++LP S C +LL G
Sbjct: 117 QPSFKMLKNTKPMTTFQEETKAQFYASEKTSPKRELAKDLPKSGESRCNPSEAGASLLVG 176
Query: 135 IIRGAL 140
I +L
Sbjct: 177 SIEPSL 182
>gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens]
Length = 609
Score = 27.3 bits (59), Expect = 7.3
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 80 QVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCY-----CNLLCG 134
Q +FKM P T +K +F + +P E ++LP S C +LL G
Sbjct: 117 QPSFKMLKNTKPMTTFQEETKAQFYASEKTSPKRELAKDLPKSGESRCNPSEAGASLLVG 176
Query: 135 IIRGAL 140
I +L
Sbjct: 177 SIEPSL 182
>gi|110578649 cache domain containing 1 [Homo sapiens]
Length = 1223
Score = 26.9 bits (58), Expect = 9.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 124 SSLCYC-NLLCGIIRGALEMVHLAADVTFLQDRL 156
S CY NLL GI+ + + ++ DVT+ QD L
Sbjct: 419 SKPCYFGNLLLGIVGVDVNLAYILEDVTYYQDSL 452
>gi|39995078 hypothetical protein LOC60684 isoform b [Homo sapiens]
Length = 1086
Score = 26.9 bits (58), Expect = 9.6
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 48 GYGIGTRLVEDFLAR-SCVGRCHSYSEIIDIIAQVAFKMYLG------ITPSVTC---NN 97
G I T V+DF+ C + H+ S +D+ Q F +YL I S C NN
Sbjct: 573 GSNIFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQ--FDIYLKADCPHPIRFSKLCVSFNN 630
Query: 98 SSKNEFSLILEKNPLVEFVEELPAGRSSL 126
N+F +I E + E +E L G+ L
Sbjct: 631 QEYNQFCVIEEASKANEVLENLTQGKMCL 659
>gi|39995076 hypothetical protein LOC60684 isoform a [Homo sapiens]
Length = 1133
Score = 26.9 bits (58), Expect = 9.6
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 48 GYGIGTRLVEDFLAR-SCVGRCHSYSEIIDIIAQVAFKMYLG------ITPSVTC---NN 97
G I T V+DF+ C + H+ S +D+ Q F +YL I S C NN
Sbjct: 573 GSNIFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQ--FDIYLKADCPHPIRFSKLCVSFNN 630
Query: 98 SSKNEFSLILEKNPLVEFVEELPAGRSSL 126
N+F +I E + E +E L G+ L
Sbjct: 631 QEYNQFCVIEEASKANEVLENLTQGKMCL 659
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,623,212
Number of Sequences: 37866
Number of extensions: 260692
Number of successful extensions: 538
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 17
length of query: 181
length of database: 18,247,518
effective HSP length: 96
effective length of query: 85
effective length of database: 14,612,382
effective search space: 1242052470
effective search space used: 1242052470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.