Guide to the Human Genome
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Name: MS4A6E Sequence: fasta or formatted (147aa) NCBI GI: 21264311
Description:

membrane-spanning 4-domains, subfamily A, member 6E

Referenced in:

MS4 Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         13           2
 C cysteine            2.0          3           1
 D aspartate           3.4          5           1
 E glutamate           3.4          5           1
 F phenylalanine       2.0          3           1
 G glycine             3.4          5           1
 H histidine           2.0          3           1
 I isoleucine          5.4          8           2
 K lysine              6.1          9           2
 L leucine            15.6         23           3
 M methionine          2.7          4           1
 N asparagine          4.1          6           1
 P proline             5.4          8           1
 Q glutamine           5.4          8           1
 R arginine            2.0          3           1
 S serine             11.6         17           2
 T threonine           6.1          9           1
 V valine              7.5         11           1
 W tryptophan          0.7          1           1
 Y tyrosine            2.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   membrane-spanning 4-domains, subfamily A, member 6E ... 
MS4A6A                0.567   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A6A                0.567   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A6A                0.264   membrane-spanning 4-domains, subfamily A, member 6A ...
MS4A7                 0.134   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.134   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.115   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A7                 0.115   membrane-spanning 4-domains, subfamily A, member 7 i...
MS4A4A                0.038   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A4A                0.038   membrane-spanning 4-domains, subfamily A, member 4 i...
MS4A4E                0.027   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.027   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A4E                0.027   PREDICTED: membrane-spanning 4-domains, subfamily A...
MS4A3                 0.027   membrane-spanning 4-domains, subfamily A, member 3 i...
MS4A3                 0.027   membrane-spanning 4-domains, subfamily A, member 3 i...
KIAA0528              0.019   hypothetical protein LOC9847 
DPYSL4                0.011   dihydropyrimidinase-like 4 
ANKAR                 0.011   ankyrin and armadillo repeat containing 
GATAD2B               0.011   GATA zinc finger domain containing 2B 
UBR4                  0.008   retinoblastoma-associated factor 600 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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