Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 209862782
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|209862782 hypothetical protein LOC730130 [Homo sapiens]
(380 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|209862782 hypothetical protein LOC730130 [Homo sapiens] 792 0.0
gi|32698890 hypothetical protein LOC161145 [Homo sapiens] 88 1e-17
gi|90903231 huntingtin [Homo sapiens] 40 0.003
gi|10863899 numb homolog (Drosophila)-like [Homo sapiens] 40 0.003
gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens] 40 0.003
gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens] 40 0.003
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 40 0.003
gi|66346708 membrane associated guanylate kinase, WW and PDZ dom... 40 0.003
gi|74272284 membrane associated guanylate kinase, WW and PDZ dom... 40 0.003
gi|74272282 membrane associated guanylate kinase, WW and PDZ dom... 40 0.003
gi|226442791 runt-related transcription factor 2 isoform b [Homo... 40 0.005
gi|226442783 runt-related transcription factor 2 isoform a [Homo... 40 0.005
gi|66934969 runt-related transcription factor 2 isoform c [Homo ... 40 0.005
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 40 0.005
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 40 0.005
gi|171543895 ataxin 2 [Homo sapiens] 39 0.006
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 39 0.008
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 39 0.008
gi|55750053 atrophin-1 [Homo sapiens] 39 0.008
gi|55750041 atrophin-1 [Homo sapiens] 39 0.008
gi|62953127 polyhomeotic 1-like [Homo sapiens] 39 0.008
gi|11386181 H2.0-like homeobox [Homo sapiens] 39 0.010
gi|160707881 formin 2 [Homo sapiens] 39 0.010
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 39 0.010
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 39 0.010
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 38 0.013
gi|119943102 CREB binding protein isoform b [Homo sapiens] 38 0.013
gi|119943104 CREB binding protein isoform a [Homo sapiens] 38 0.013
gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo s... 38 0.017
gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo sa... 38 0.017
>gi|209862782 hypothetical protein LOC730130 [Homo sapiens]
Length = 380
Score = 792 bits (2046), Expect = 0.0
Identities = 380/380 (100%), Positives = 380/380 (100%)
Query: 1 MAGSDVDSEGPARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMRLYFY 60
MAGSDVDSEGPARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMRLYFY
Sbjct: 1 MAGSDVDSEGPARRGGAARRPGAPGGPGSEAAAGCPEPLSTAEAPAESATLPAWMRLYFY 60
Query: 61 GMHGITLDVLVSSARRFARSPDLRMLGFSSPYRCLLHSLTHFALEKVYLQQRRCPNAFVF 120
GMHGITLDVLVSSARRFARSPDLRMLGFSSPYRCLLHSLTHFALEKVYLQQRRCPNAFVF
Sbjct: 61 GMHGITLDVLVSSARRFARSPDLRMLGFSSPYRCLLHSLTHFALEKVYLQQRRCPNAFVF 120
Query: 121 NFLLYPSAHVGLQTLAGQALLLSLGGGAGVAVAPGALDLALQYVLALYHCQVFLKRFLRL 180
NFLLYPSAHVGLQTLAGQALLLSLGGGAGVAVAPGALDLALQYVLALYHCQVFLKRFLRL
Sbjct: 121 NFLLYPSAHVGLQTLAGQALLLSLGGGAGVAVAPGALDLALQYVLALYHCQVFLKRFLRL 180
Query: 181 RYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQGLPD 240
RYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQGLPD
Sbjct: 181 RYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQGLPD 240
Query: 241 LPRFLFFGMHGFLDEIFFTFFFNVLGQGDGTTSGHTSLWSFFMYGSCSFVVEKLYFHLHY 300
LPRFLFFGMHGFLDEIFFTFFFNVLGQGDGTTSGHTSLWSFFMYGSCSFVVEKLYFHLHY
Sbjct: 241 LPRFLFFGMHGFLDEIFFTFFFNVLGQGDGTTSGHTSLWSFFMYGSCSFVVEKLYFHLHY 300
Query: 301 SRGWGTWKRVPIYVIFIYVWELSWGLGLRTCGACSWDYSHYPLNFMGLITLMYLPGWIFL 360
SRGWGTWKRVPIYVIFIYVWELSWGLGLRTCGACSWDYSHYPLNFMGLITLMYLPGWIFL
Sbjct: 301 SRGWGTWKRVPIYVIFIYVWELSWGLGLRTCGACSWDYSHYPLNFMGLITLMYLPGWIFL 360
Query: 361 SVYQDLISNVLWRVQYVPAN 380
SVYQDLISNVLWRVQYVPAN
Sbjct: 361 SVYQDLISNVLWRVQYVPAN 380
>gi|32698890 hypothetical protein LOC161145 [Homo sapiens]
Length = 167
Score = 88.2 bits (217), Expect = 1e-17
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 233 APSQGLPDLPRFLFFGMHGFLDEIFFTFFFNVLGQGDGTTSGHTSLWSFFMYGSCSFVVE 292
A ++ L L R+ + +HG+ E+ FT + + + G TS+W+ F+YG+ +VE
Sbjct: 2 ASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNLNWKFPGVTSVWALFIYGTSILIVE 61
Query: 293 KLYFHLHYSRG-WGTWKRVPIYVIFIYVWELSWGLGLRTCGACSWDYSHYPLNFMGLITL 351
++Y L RG R IY ++ Y+WE + G LR AC WDYS + +FMGLITL
Sbjct: 62 RMYLRL---RGRCPLLLRCLIYTLWTYLWEFTTGFILRQFNACPWDYSQFDFDFMGLITL 118
Query: 352 MYLPGWI--FLSVYQDLISNVL 371
Y W L + Q +I N L
Sbjct: 119 EYAVPWFCGALIMEQFIIRNTL 140
Score = 37.4 bits (85), Expect = 0.023
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 46 AESATLPAWMRLYFYGMHGITLDVLVSSARRFARSPDLRMLGFSSPYRCLLHSLTHFALE 105
A + L A R Y Y +HG +V+ ++A F + + + G +S + ++ + +E
Sbjct: 2 ASAEPLTALSRWYLYAIHGYFCEVMFTAAWEFVVNLNWKFPGVTSVWALFIYGTSILIVE 61
Query: 106 KVYLQQR-RCP 115
++YL+ R RCP
Sbjct: 62 RMYLRLRGRCP 72
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 40.4 bits (93), Expect = 0.003
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 174 LKRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVP 214
LK F + + +Q+++QQQQQQQQQQQQ P PP ++P
Sbjct: 14 LKSFQQQQQQQQQQQQQQQQQQQQQQQPPPPPPPPPPPQLP 54
Score = 37.7 bits (86), Expect = 0.017
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 174 LKRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPP 209
+K F L+ +Q+++QQQQQQQQQQQQ++ PP
Sbjct: 8 MKAFESLKSFQQQQQQQQQQQQQQQQQQQQQQQPPP 43
>gi|10863899 numb homolog (Drosophila)-like [Homo sapiens]
Length = 609
Score = 40.4 bits (93), Expect = 0.003
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 173 FLKRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGG 232
+L+ ++ +Q+++QQQQQQQQQQQQ++ A V P VPT A + P
Sbjct: 416 WLEEVSQVAKAQQQQQQQQQQQQQQQQQQQQAASVAP---VPTMPPALQPFPAPVGPFDA 472
Query: 233 APSQGLPDLP 242
AP+Q LP
Sbjct: 473 APAQVAVFLP 482
>gi|32307126 nuclear receptor coactivator 3 isoform a [Homo sapiens]
Length = 1424
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQGLPDLPR 243
+Q+++QQQQQQQQQQQQ+ A PP + P P+ AP Q P P
Sbjct: 1259 QQQQQQQQQQQQQQQQQQTQAFSPPPNVTASPSMDGLLAGPTMPQ----APPQQFPYQPN 1314
Query: 244 F 244
+
Sbjct: 1315 Y 1315
>gi|32307124 nuclear receptor coactivator 3 isoform b [Homo sapiens]
Length = 1420
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQGLPDLPR 243
+Q+++QQQQQQQQQQQQ+ A PP + P P+ AP Q P P
Sbjct: 1255 QQQQQQQQQQQQQQQQQQTQAFSPPPNVTASPSMDGLLAGPTMPQ----APPQQFPYQPN 1310
Query: 244 F 244
+
Sbjct: 1311 Y 1311
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 40.0 bits (92), Expect = 0.003
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 184 RQRRRQQQQQQQ--QQQQQRRGALPVPPGARVPTAAGARRR-RPRGPRGAGGAPSQGLPD 240
+Q+R+ QQQQQQ QQQQ + PVPPGA P A+ +P + S LP
Sbjct: 3378 QQQRQLQQQQQQKVQQQQPKASQTPVPPGAPSPDKDPAKESPKPEEQKNTPREVSPLLPK 3437
Query: 241 LP 242
LP
Sbjct: 3438 LP 3439
Score = 34.7 bits (78), Expect = 0.15
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 175 KRFLRLRYGRQRRRQQQQQQQQQQQQRRGA 204
K+ + RQ+++QQQQQQQQQQQQ++ A
Sbjct: 1713 KKLADMIASRQQQQQQQQQQQQQQQQQQQA 1742
Score = 32.0 bits (71), Expect = 0.95
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 184 RQRRRQQQQQQQQQQQQRRGAL 205
+Q+++QQQQQQQQQQQQ+ L
Sbjct: 1724 QQQQQQQQQQQQQQQQQQAQTL 1745
Score = 30.4 bits (67), Expect = 2.8
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 183 GRQRRRQQQQQQQQQQQQRRGALPVPPGARVP 214
G Q+ QQQQQQQQ Q Q+ P PP A+ P
Sbjct: 3191 GPQQPPQQQQQQQQPQVQQP---PPPPAAQPP 3219
Score = 29.3 bits (64), Expect = 6.1
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 179 RLRYGRQRRRQQQQQQQQQQQQ 200
R + +Q+++QQQQQQQQQQ Q
Sbjct: 1722 RQQQQQQQQQQQQQQQQQQQAQ 1743
>gi|66346708 membrane associated guanylate kinase, WW and PDZ domain
containing 1 isoform b [Homo sapiens]
Length = 1256
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 175 KRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAP 234
KR +L +Q+++QQQQQQQQQQQQ+ A VP P P A P
Sbjct: 395 KRKKQLEQQQQQQQQQQQQQQQQQQQQTEEWTEDHSALVPPV--IPNHPPSNPEPAREVP 452
Query: 235 SQGLPDLPR 243
QG P R
Sbjct: 453 LQGKPFFTR 461
Score = 31.2 bits (69), Expect = 1.6
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 178 LRLRYGRQRRRQQQQQQQQQQQQRR 202
L + +Q +QQQQQQQQQQQQ++
Sbjct: 392 LEAKRKKQLEQQQQQQQQQQQQQQQ 416
>gi|74272284 membrane associated guanylate kinase, WW and PDZ domain
containing 1 isoform c [Homo sapiens]
Length = 1462
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 175 KRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAP 234
KR +L +Q+++QQQQQQQQQQQQ+ A VP P P A P
Sbjct: 395 KRKKQLEQQQQQQQQQQQQQQQQQQQQTEEWTEDHSALVPPV--IPNHPPSNPEPAREVP 452
Query: 235 SQGLPDLPR 243
QG P R
Sbjct: 453 LQGKPFFTR 461
Score = 31.2 bits (69), Expect = 1.6
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 178 LRLRYGRQRRRQQQQQQQQQQQQRR 202
L + +Q +QQQQQQQQQQQQ++
Sbjct: 392 LEAKRKKQLEQQQQQQQQQQQQQQQ 416
>gi|74272282 membrane associated guanylate kinase, WW and PDZ domain
containing 1 isoform a [Homo sapiens]
Length = 1287
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 175 KRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAP 234
KR +L +Q+++QQQQQQQQQQQQ+ A VP P P A P
Sbjct: 395 KRKKQLEQQQQQQQQQQQQQQQQQQQQTEEWTEDHSALVPPV--IPNHPPSNPEPAREVP 452
Query: 235 SQGLPDLPR 243
QG P R
Sbjct: 453 LQGKPFFTR 461
Score = 31.2 bits (69), Expect = 1.6
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 178 LRLRYGRQRRRQQQQQQQQQQQQRR 202
L + +Q +QQQQQQQQQQQQ++
Sbjct: 392 LEAKRKKQLEQQQQQQQQQQQQQQQ 416
>gi|226442791 runt-related transcription factor 2 isoform b [Homo
sapiens]
Length = 499
Score = 39.7 bits (91), Expect = 0.005
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRP 224
+Q+++QQQQQQQQQQQQ A A AA R RP
Sbjct: 55 QQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRP 95
Score = 38.9 bits (89), Expect = 0.008
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGP 227
+Q+++QQQQQQQQQQQQ++ A A AA A R R P
Sbjct: 53 QQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPP 96
Score = 37.4 bits (85), Expect = 0.023
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPR 228
+Q+++QQQQQQQQQQQ+ A A AA R R P R
Sbjct: 56 QQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNR 100
Score = 36.2 bits (82), Expect = 0.050
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPR 225
+Q+++QQQQQQQQQQQQ++ A AA A PR
Sbjct: 51 QQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPR 92
Score = 34.3 bits (77), Expect = 0.19
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 185 QRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPR 228
Q+++QQQQQQQQQQQQ++ A AA A PR
Sbjct: 49 QQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPR 92
>gi|226442783 runt-related transcription factor 2 isoform a [Homo
sapiens]
Length = 521
Score = 39.7 bits (91), Expect = 0.005
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRP 224
+Q+++QQQQQQQQQQQQ A A AA R RP
Sbjct: 55 QQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRP 95
Score = 38.9 bits (89), Expect = 0.008
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGP 227
+Q+++QQQQQQQQQQQQ++ A A AA A R R P
Sbjct: 53 QQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPP 96
Score = 37.4 bits (85), Expect = 0.023
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPR 228
+Q+++QQQQQQQQQQQ+ A A AA R R P R
Sbjct: 56 QQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNR 100
Score = 36.2 bits (82), Expect = 0.050
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPR 225
+Q+++QQQQQQQQQQQQ++ A AA A PR
Sbjct: 51 QQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPR 92
Score = 34.3 bits (77), Expect = 0.19
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 185 QRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPR 228
Q+++QQQQQQQQQQQQ++ A AA A PR
Sbjct: 49 QQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPR 92
>gi|66934969 runt-related transcription factor 2 isoform c [Homo
sapiens]
Length = 507
Score = 39.7 bits (91), Expect = 0.005
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRP 224
+Q+++QQQQQQQQQQQQ A A AA R RP
Sbjct: 41 QQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRP 81
Score = 38.9 bits (89), Expect = 0.008
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGP 227
+Q+++QQQQQQQQQQQQ++ A A AA A R R P
Sbjct: 39 QQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPP 82
Score = 37.4 bits (85), Expect = 0.023
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPR 228
+Q+++QQQQQQQQQQQ+ A A AA R R P R
Sbjct: 42 QQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPRLRPPHDNR 86
Score = 36.2 bits (82), Expect = 0.050
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPR 225
+Q+++QQQQQQQQQQQQ++ A AA A PR
Sbjct: 37 QQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPR 78
Score = 34.3 bits (77), Expect = 0.19
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 185 QRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPR 228
Q+++QQQQQQQQQQQQ++ A AA A PR
Sbjct: 35 QQQQQQQQQQQQQQQQQQQQQQQEAAAAAAAAAAAAAAAAAVPR 78
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 39.7 bits (91), Expect = 0.005
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPS--QGLP 239
+Q+++QQQQQQQQQQQQ + P P + A RP GP PS Q LP
Sbjct: 222 QQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLP 279
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 39.7 bits (91), Expect = 0.005
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPS--QGLP 239
+Q+++QQQQQQQQQQQQ + P P + A RP GP PS Q LP
Sbjct: 222 QQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLP 279
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 39.3 bits (90), Expect = 0.006
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 178 LRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGA 219
+ L+ +Q+++QQQQQQQQQQQQ++ P P A V G+
Sbjct: 161 MSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGS 202
Score = 38.1 bits (87), Expect = 0.013
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 178 LRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAPSQG 237
L+ + +Q+++QQQQQQQQQQQQ++ P R P +G P + + S
Sbjct: 163 LKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLASPAAAPSPSSSSVSSS 222
Query: 238 LPDLP 242
P
Sbjct: 223 SATAP 227
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 38.9 bits (89), Expect = 0.008
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 175 KRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVP 208
K +R Y R+ + QQQQQQQQQQQQ++ P+P
Sbjct: 480 KSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMP 513
Score = 33.9 bits (76), Expect = 0.25
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 174 LKRFLRLRYGRQRRRQQQQQQQQQQQQR 201
++R R R Q+++QQQQQQQQQQQQ+
Sbjct: 483 VRRSYRRRGKSQQQQQQQQQQQQQQQQQ 510
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 38.9 bits (89), Expect = 0.008
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 175 KRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVP 208
K +R Y R+ + QQQQQQQQQQQQ++ P+P
Sbjct: 480 KSLVRRSYRRRGKSQQQQQQQQQQQQQQQQQPMP 513
Score = 33.9 bits (76), Expect = 0.25
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 174 LKRFLRLRYGRQRRRQQQQQQQQQQQQR 201
++R R R Q+++QQQQQQQQQQQQ+
Sbjct: 483 VRRSYRRRGKSQQQQQQQQQQQQQQQQQ 510
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.9 bits (89), Expect = 0.008
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 184 RQRRRQQQQQQQQQQQQRRG-ALPVPPGA 211
+Q+++QQQQQQQQQQQQ G + P PPGA
Sbjct: 486 QQQQQQQQQQQQQQQQQHHGNSGPPPPGA 514
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 38.9 bits (89), Expect = 0.008
Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 184 RQRRRQQQQQQQQQQQQRRG-ALPVPPGA 211
+Q+++QQQQQQQQQQQQ G + P PPGA
Sbjct: 486 QQQQQQQQQQQQQQQQQHHGNSGPPPPGA 514
>gi|62953127 polyhomeotic 1-like [Homo sapiens]
Length = 1004
Score = 38.9 bits (89), Expect = 0.008
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 159 LALQYVLALYHCQVFLKRFLRLRYGR------QRRRQQQQQQQQQQQQRRGALPVPPGAR 212
+ +Q +A++H Q F R +L + Q+++QQQQQQQQQQQ + L P +
Sbjct: 393 VVIQQQIAIHHQQQFQHRQSQLLHTATHLQLAQQQQQQQQQQQQQQQPQATTLTAPQPPQ 452
Query: 213 VP 214
VP
Sbjct: 453 VP 454
>gi|11386181 H2.0-like homeobox [Homo sapiens]
Length = 488
Score = 38.5 bits (88), Expect = 0.010
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 173 FLKRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGG 232
F +R L QQQQQQQQ QQ++ P GA P A+G R P +G
Sbjct: 108 FPQRLSPLSAAYHHHHPQQQQQQQQPQQQQPPPPPRAGALQPPASGT--RVVPNPHHSGS 165
Query: 233 APSQGLPDL 241
AP+ DL
Sbjct: 166 APAPSSKDL 174
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 38.5 bits (88), Expect = 0.010
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 174 LKRFLRLRYGRQRRRQQQQQQQQQQQQRRGA-LPVPPGARVPTAAGARRRRPR---GPR- 228
+++ +RL+ +Q++ Q Q QQQQQQQQ +GA P P V GA R GP
Sbjct: 199 IQQAIRLQQQQQQQLQLQLQQQQQQQQLQGAEEPAAPPTAVSPQPGAFLGLDRFLLGPSG 258
Query: 229 GAGGAPSQGLPDLPRFL 245
GAG AP G PD + L
Sbjct: 259 GAGEAP--GSPDTEQAL 273
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 38.5 bits (88), Expect = 0.010
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 14/81 (17%)
Query: 162 QYVLALYHC---QVFLKRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAG 218
Q+++ L+H Q+ ++ R + + +QQQQQQQQQQQQ++ AL P + P
Sbjct: 218 QHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQAQPPIQQPP--- 274
Query: 219 ARRRRPRGPRGAGGAPSQGLP 239
++P+ P PSQ LP
Sbjct: 275 --MQQPQPP------PSQALP 287
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 38.5 bits (88), Expect = 0.010
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 14/81 (17%)
Query: 162 QYVLALYHC---QVFLKRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAG 218
Q+++ L+H Q+ ++ R + + +QQQQQQQQQQQQ++ AL P + P
Sbjct: 218 QHLIKLHHQNQQQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQALQAQPPIQQPP--- 274
Query: 219 ARRRRPRGPRGAGGAPSQGLP 239
++P+ P PSQ LP
Sbjct: 275 --MQQPQPP------PSQALP 287
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 38.1 bits (87), Expect = 0.013
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 188 RQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGA 230
RQQQ QQQQQQ + G+ PP + GA + P P+GA
Sbjct: 71 RQQQLQQQQQQGNKTGSRTGPPASIRGGGGGAEKATPLAPKGA 113
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 38.1 bits (87), Expect = 0.013
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 175 KRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAP 234
+ LR + +Q+++QQQQQQQQQQQQ+ A G A + ++P+GP G A
Sbjct: 2152 REMLRRQLLQQQQQQQQQQQQQQQQQQGSA-----GMAGGMAGHGQFQQPQGPGGYPPAM 2206
Query: 235 SQ 236
Q
Sbjct: 2207 QQ 2208
Score = 33.9 bits (76), Expect = 0.25
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 181 RYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAP 234
+Y RRQ QQQQQQQQQ++ G+ A + + P+G GG P
Sbjct: 2150 QYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAGMAGGMAGHGQFQQPQGPGGYP 2203
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 38.1 bits (87), Expect = 0.013
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 175 KRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAP 234
+ LR + +Q+++QQQQQQQQQQQQ+ A G A + ++P+GP G A
Sbjct: 2190 REMLRRQLLQQQQQQQQQQQQQQQQQQGSA-----GMAGGMAGHGQFQQPQGPGGYPPAM 2244
Query: 235 SQ 236
Q
Sbjct: 2245 QQ 2246
Score = 33.9 bits (76), Expect = 0.25
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 181 RYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAAGARRRRPRGPRGAGGAP 234
+Y RRQ QQQQQQQQQ++ G+ A + + P+G GG P
Sbjct: 2188 QYREMLRRQLLQQQQQQQQQQQQQQQQQQGSAGMAGGMAGHGQFQQPQGPGGYP 2241
>gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1662
Score = 37.7 bits (86), Expect = 0.017
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 158 DLALQYVLALYHCQVFLKRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAA 217
++ Y L + R L + +Q+++QQQQQQQQQQQQ++ +V AA
Sbjct: 1580 EVVRNYTFLLRAAEESTARNLNQQQQQQQQQQQQQQQQQQQQQQQ------QQQQVAAAA 1633
Query: 218 GARRRRPRG 226
GA P G
Sbjct: 1634 GAATEHPPG 1642
Score = 29.6 bits (65), Expect = 4.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAA 217
+Q+++QQQQQQQQ A PPG+ PT+A
Sbjct: 1616 QQQQQQQQQQQQQVAAAAGAATEHPPGS--PTSA 1647
>gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1810
Score = 37.7 bits (86), Expect = 0.017
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 158 DLALQYVLALYHCQVFLKRFLRLRYGRQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAA 217
++ Y L + R L + +Q+++QQQQQQQQQQQQ++ +V AA
Sbjct: 1728 EVVRNYTFLLRAAEESTARNLNQQQQQQQQQQQQQQQQQQQQQQQ------QQQQVAAAA 1781
Query: 218 GARRRRPRG 226
GA P G
Sbjct: 1782 GAATEHPPG 1790
Score = 29.6 bits (65), Expect = 4.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 184 RQRRRQQQQQQQQQQQQRRGALPVPPGARVPTAA 217
+Q+++QQQQQQQQ A PPG+ PT+A
Sbjct: 1764 QQQQQQQQQQQQQVAAAAGAATEHPPGS--PTSA 1795
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.142 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,136,106
Number of Sequences: 37866
Number of extensions: 920464
Number of successful extensions: 18223
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 141
Number of HSP's that attempted gapping in prelim test: 12845
Number of HSP's gapped (non-prelim): 3594
length of query: 380
length of database: 18,247,518
effective HSP length: 104
effective length of query: 276
effective length of database: 14,309,454
effective search space: 3949409304
effective search space used: 3949409304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.