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Search of human proteins with 208022668
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|208022668 endothelial cell-specific molecule 1 isoform b
precursor [Homo sapiens]
(134 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208022668 endothelial cell-specific molecule 1 isoform b prec... 292 6e-80
gi|5901946 endothelial cell-specific molecule 1 isoform a precur... 268 7e-73
gi|24308541 HtrA serine peptidase 4 precursor [Homo sapiens] 55 2e-08
gi|10092639 cysteine-rich motor neuron 1 [Homo sapiens] 53 8e-08
gi|22129776 HtrA serine peptidase 3 [Homo sapiens] 50 5e-07
gi|4506141 HtrA serine peptidase 1 precursor [Homo sapiens] 50 7e-07
gi|4505423 nephroblastoma overexpressed precursor [Homo sapiens] 49 1e-06
gi|62243290 insulin-like growth factor binding protein 4 precurs... 48 2e-06
gi|10834982 insulin-like growth factor binding protein 5 [Homo s... 46 8e-06
gi|56090548 insulin-like growth factor binding protein-like 1 [H... 46 1e-05
gi|62243068 insulin-like growth factor binding protein 3 isoform... 45 2e-05
gi|62243248 insulin-like growth factor binding protein 3 isoform... 45 2e-05
gi|4507923 WNT1 inducible signaling pathway protein 2 precursor ... 44 3e-05
gi|55925576 insulin-like growth factor binding protein 2, 36kDa ... 43 9e-05
gi|4503123 connective tissue growth factor [Homo sapiens] 42 2e-04
gi|4504619 insulin-like growth factor binding protein 7 [Homo sa... 39 0.002
gi|31542331 cysteine-rich, angiogenic inducer, 61 [Homo sapiens] 36 0.008
gi|19923632 Kazal-type serine peptidase inhibitor domain 1 precu... 36 0.008
gi|4504615 insulin-like growth factor binding protein 1 precurso... 35 0.014
gi|38202241 WNT1 inducible signaling pathway protein 3 isoform 3... 35 0.014
gi|4507925 WNT1 inducible signaling pathway protein 3 isoform 1 ... 35 0.014
gi|4507921 WNT1 inducible signaling pathway protein 1 isoform 1 ... 35 0.024
gi|18491000 WNT1 inducible signaling pathway protein 1 isoform 2... 34 0.031
gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo s... 33 0.069
gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo sa... 33 0.069
gi|122937343 platelet endothelial aggregation receptor 1 [Homo s... 31 0.34
gi|122937283 6720455I24Rik homolog [Homo sapiens] 30 0.44
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 30 0.76
gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens] 30 0.76
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 30 0.76
>gi|208022668 endothelial cell-specific molecule 1 isoform b
precursor [Homo sapiens]
Length = 134
Score = 292 bits (747), Expect = 6e-80
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG 60
MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG
Sbjct: 1 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG 60
Query: 61 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKEHDMASGDGNIVREEVVKEN 120
RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKEHDMASGDGNIVREEVVKEN
Sbjct: 61 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKEHDMASGDGNIVREEVVKEN 120
Query: 121 AAGSPVMRKWLNPR 134
AAGSPVMRKWLNPR
Sbjct: 121 AAGSPVMRKWLNPR 134
>gi|5901946 endothelial cell-specific molecule 1 isoform a precursor
[Homo sapiens]
Length = 184
Score = 268 bits (686), Expect = 7e-73
Identities = 134/184 (72%), Positives = 134/184 (72%), Gaps = 50/184 (27%)
Query: 1 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG 60
MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG
Sbjct: 1 MKSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAG 60
Query: 61 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICK-------------------- 100
RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICK
Sbjct: 61 RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKDCPYGTFGMDCRETCNCQSG 120
Query: 101 ------------------------------EHDMASGDGNIVREEVVKENAAGSPVMRKW 130
EHDMASGDGNIVREEVVKENAAGSPVMRKW
Sbjct: 121 ICDRGTGKCLKFPFFQYSVTKSSNRFVSLTEHDMASGDGNIVREEVVKENAAGSPVMRKW 180
Query: 131 LNPR 134
LNPR
Sbjct: 181 LNPR 184
>gi|24308541 HtrA serine peptidase 4 precursor [Homo sapiens]
Length = 476
Score = 55.1 bits (131), Expect = 2e-08
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 7 LTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCK---RTVLDDCGCCRVCAAGRGE 63
L LLVP A + CP C + C + P C V D C CCRVC A E
Sbjct: 19 LLLLLVPVLWAGAEKLHTQPSCPAVCQPTRCPALPTCALGTTPVFDLCRCCRVCPAAERE 78
Query: 64 TCYRTVSGMDGMKCGPGLRC 83
C G G C PGL+C
Sbjct: 79 VC----GGAQGQPCAPGLQC 94
>gi|10092639 cysteine-rich motor neuron 1 [Homo sapiens]
Length = 1036
Score = 52.8 bits (125), Expect = 8e-08
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 6 LLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDD-CGCCRVCAAGRGET 64
LL +LL L+A V P CD S+C+ C +++ CGCC CA+ R E+
Sbjct: 16 LLVSLLGLLLLLARSGTRALVCLP--CDESKCEEPRNCPGSIVQGVCGCCYTCASQRNES 73
Query: 65 CYRTVSGMDGMKCGPGLRC---QPSNGEDPFGEEFGICKEHD 103
C T G+ G C GLRC P NG+ E G+C++ +
Sbjct: 74 CGGTF-GIYG-TCDRGLRCVIRPPLNGDSLTEYEAGVCEDEN 113
>gi|22129776 HtrA serine peptidase 3 [Homo sapiens]
Length = 453
Score = 50.1 bits (118), Expect = 5e-07
Identities = 27/60 (45%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 25 AVDCPQHCDSSECKSSPRCKRTVLDD-CGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRC 83
A CP CD S C S PRC + D C CC VCAA GE C G CG L C
Sbjct: 22 AAPCPARCDVSRCPS-PRCPGGYVPDLCNCCLVCAASEGEPC----GGPLDSPCGESLEC 76
>gi|4506141 HtrA serine peptidase 1 precursor [Homo sapiens]
Length = 480
Score = 49.7 bits (117), Expect = 7e-07
Identities = 31/84 (36%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 5 LLLTTLLVPAHLV---AAWSNNYAVDCPQHCDSSECKSSPR-CKR-TVLDDCGCCRVCAA 59
LLL L PA A S A CP C+ + C P C+ D CGCC VC A
Sbjct: 11 LLLLLLAAPASAQLSRAGRSAPLAAGCPDRCEPARCPPQPEHCEGGRARDACGCCEVCGA 70
Query: 60 GRGETCYRTVSGMDGMKCGPGLRC 83
G C G+ CG GL+C
Sbjct: 71 PEGAAC-----GLQEGPCGEGLQC 89
>gi|4505423 nephroblastoma overexpressed precursor [Homo sapiens]
Length = 357
Score = 48.9 bits (115), Expect = 1e-06
Identities = 41/114 (35%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 2 KSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAGR 61
K L LT LL+ A + CP C ++ +P R VLD C CC VCA R
Sbjct: 13 KQCLCLTFLLLHLLGQVAATQRCPPQCPGRCPATPPTCAPGV-RAVLDGCSCCLVCARQR 71
Query: 62 GETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICK--EHDMASGDGNIVR 113
GE+C S ++ GL C S DP + GIC E D DG I R
Sbjct: 72 GESC----SDLEPCDESSGLYCDRS--ADP-SNQTGICTAVEGDNCVFDGVIYR 118
>gi|62243290 insulin-like growth factor binding protein 4 precursor
[Homo sapiens]
Length = 258
Score = 48.1 bits (113), Expect = 2e-06
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 16/107 (14%)
Query: 6 LLTTLLVPAHLVAAWSN----NYAVDCPQHCDS--SECKSSPRCKRTVLDD-CGCCRVCA 58
+L LV A L+AA + A+ CP + + C+ C+ V + CGCC CA
Sbjct: 1 MLPLCLVAALLLAAGPGPSLGDEAIHCPPCSEEKLARCRPPVGCEELVREPGCGCCATCA 60
Query: 59 AGRGETCYRTVSGMDGMKCGPGLRCQPSNG-EDPFGEEF---GICKE 101
G G C G+ +CG GLRC P G E P G+C E
Sbjct: 61 LGLGMPC-----GVYTPRCGSGLRCYPPRGVEKPLHTLMHGQGVCME 102
>gi|10834982 insulin-like growth factor binding protein 5 [Homo
sapiens]
Length = 272
Score = 46.2 bits (108), Expect = 8e-06
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 4 VLLLTTLLVPAHLVAAWSNNYAVDCPQHCDS---SECKSSPR-CKRTVLDDCGCCRVCAA 59
+L LL+ A+ A S V C + CD S C SP C+ CGCC CA
Sbjct: 3 LLTAVLLLLAAYAGPAQSLGSFVHC-EPCDEKALSMCPPSPLGCELVKEPGCGCCMTCAL 61
Query: 60 GRGETCYRTVSGMDGMKCGPGLRCQPSNGED 90
G++C G+ +C GLRC P E+
Sbjct: 62 AEGQSC-----GVYTERCAQGLRCLPRQDEE 87
>gi|56090548 insulin-like growth factor binding protein-like 1 [Homo
sapiens]
Length = 278
Score = 45.8 bits (107), Expect = 1e-05
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 32 CDSSECKSSPRCKR---TVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRC-QPSN 87
C C + C + LD+CGCC C G +C G G +CGPGL C +
Sbjct: 41 CRPEGCPAPAPCPAPGISALDECGCCARCLGAEGASC----GGRAGGRCGPGLVCASQAA 96
Query: 88 GEDPFGEEFGICKEHDMASG 107
G P G +C + G
Sbjct: 97 GAAPEGTGLCVCAQRGTVCG 116
>gi|62243068 insulin-like growth factor binding protein 3 isoform b
precursor [Homo sapiens]
Length = 291
Score = 44.7 bits (104), Expect = 2e-05
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 32 CDS---SECKSSPR-CKRTVLDD-CGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPS 86
CD+ ++C P C V + CGCC CA G+ C G+ +CG GLRCQPS
Sbjct: 43 CDARALAQCAPPPAVCAELVREPGCGCCLTCALSEGQPC-----GIYTERCGSGLRCQPS 97
Query: 87 NGE 89
E
Sbjct: 98 PDE 100
>gi|62243248 insulin-like growth factor binding protein 3 isoform a
precursor [Homo sapiens]
Length = 297
Score = 44.7 bits (104), Expect = 2e-05
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 32 CDS---SECKSSPR-CKRTVLDD-CGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPS 86
CD+ ++C P C V + CGCC CA G+ C G+ +CG GLRCQPS
Sbjct: 43 CDARALAQCAPPPAVCAELVREPGCGCCLTCALSEGQPC-----GIYTERCGSGLRCQPS 97
Query: 87 NGE 89
E
Sbjct: 98 PDE 100
>gi|4507923 WNT1 inducible signaling pathway protein 2 precursor
[Homo sapiens]
Length = 250
Score = 44.3 bits (103), Expect = 3e-05
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 28 CPQHCDSSECKSSPRCKR---TVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQ 84
CP C PRC VLD CGCCRVCA GE C + GL CQ
Sbjct: 26 CPTPCTCPW--PPPRCPLGVPLVLDGCGCCRVCARRLGEPC----DQLHVCDASQGLVCQ 79
Query: 85 PSNGEDPFGEEFGICKEHDMASGDGNIVRE 114
P G G + ++ +G + RE
Sbjct: 80 PGAGPGGRGALCLLAEDDSSCEVNGRLYRE 109
>gi|55925576 insulin-like growth factor binding protein 2, 36kDa
[Homo sapiens]
Length = 328
Score = 42.7 bits (99), Expect = 9e-05
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Query: 51 CGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPSNGED 90
CGCC VCA GE C G+ +CG GLRC P G +
Sbjct: 87 CGCCSVCARLEGEAC-----GVYTPRCGQGLRCYPHPGSE 121
>gi|4503123 connective tissue growth factor [Homo sapiens]
Length = 349
Score = 41.6 bits (96), Expect = 2e-04
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 29 PQHCDSSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGP--GLRCQPS 86
P C P VLD CGCCRVCA GE C + C P GL C
Sbjct: 32 PCRCPDEPAPRCPAGVSLVLDGCGCCRVCAKQLGELC------TERDPCDPHKGLFCDFG 85
Query: 87 NGEDPFGEEFGICKEHDMA 105
+ P + G+C D A
Sbjct: 86 S---PANRKIGVCTAKDGA 101
>gi|4504619 insulin-like growth factor binding protein 7 [Homo
sapiens]
Length = 282
Score = 38.5 bits (88), Expect = 0.002
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 16 LVAAWSNNYAVDCPQHCDSSECKSSPRCKRTV---LDDCGCCRVCAAGRGETCYRTVSGM 72
L+ S++ + D C+ + C P + D CGCC +CA G GE C +G
Sbjct: 19 LLLPLSSSSSSDTCGPCEPASCPPLPPLGCLLGETRDACGCCPMCARGEGEPCGGGGAGR 78
Query: 73 DGMKCGPGLRCQPS 86
C PG+ C S
Sbjct: 79 G--YCAPGMECVKS 90
>gi|31542331 cysteine-rich, angiogenic inducer, 61 [Homo sapiens]
Length = 381
Score = 36.2 bits (82), Expect = 0.008
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 2 KSVLLLTTLLVPAHLVAAWSNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAGR 61
+++ L+ TLL HL + C HC K +P V D CGCC+VCA
Sbjct: 7 RALALVVTLL---HLTRLALSTCPAAC--HCPLEAPKCAPGVG-LVRDGCGCCKVCAKQL 60
Query: 62 GETCYRT--VSGMDGMKCGPG 80
E C +T G++C G
Sbjct: 61 NEDCSKTQPCDHTKGLECNFG 81
>gi|19923632 Kazal-type serine peptidase inhibitor domain 1
precursor [Homo sapiens]
Length = 304
Score = 36.2 bits (82), Expect = 0.008
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 32 CDSSECKSSPRCKR-TVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPSNGED 90
C EC + C V D CGCC CA G+ C S CG L C+ G D
Sbjct: 56 CRPEECAAPRGCLAGRVRDACGCCWECANLEGQLCDLDPSAHFYGHCGEQLECRLDTGGD 115
>gi|4504615 insulin-like growth factor binding protein 1 precursor
[Homo sapiens]
Length = 259
Score = 35.4 bits (80), Expect = 0.014
Identities = 34/116 (29%), Positives = 42/116 (36%), Gaps = 25/116 (21%)
Query: 4 VLLLTTLLVPAHLVAAW-----SNNYAVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCA 58
VLLL T+ V A W S CP S+ C R CGCC +CA
Sbjct: 12 VLLLLTVQVGVTAGAPWQCAPCSAEKLALCPPV--SASCSEVTRSA-----GCGCCPMCA 64
Query: 59 AGRGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKEHDMASGDGNIVRE 114
G C G+ +C GL C+ GE H + G G V+E
Sbjct: 65 LPLGAAC-----GVATARCARGLSCRALPGEQQ--------PLHALTRGQGACVQE 107
>gi|38202241 WNT1 inducible signaling pathway protein 3 isoform 3
[Homo sapiens]
Length = 372
Score = 35.4 bits (80), Expect = 0.014
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 21/77 (27%)
Query: 28 CPQHCDSSECKSSPRCK---RTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGP--GLR 82
CPQ PRC V D CGCC++CA GE C + C P GL
Sbjct: 72 CPQQ--------KPRCPPGVSLVRDGCGCCKICAKQPGEIC------NEADLCDPHKGLY 117
Query: 83 CQPSNGEDPFGEEFGIC 99
C S + E G+C
Sbjct: 118 CDYSVDRPRY--ETGVC 132
>gi|4507925 WNT1 inducible signaling pathway protein 3 isoform 1
[Homo sapiens]
Length = 354
Score = 35.4 bits (80), Expect = 0.014
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 21/77 (27%)
Query: 28 CPQHCDSSECKSSPRCK---RTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGP--GLR 82
CPQ PRC V D CGCC++CA GE C + C P GL
Sbjct: 54 CPQQ--------KPRCPPGVSLVRDGCGCCKICAKQPGEIC------NEADLCDPHKGLY 99
Query: 83 CQPSNGEDPFGEEFGIC 99
C S + E G+C
Sbjct: 100 CDYSVDRPRY--ETGVC 114
>gi|4507921 WNT1 inducible signaling pathway protein 1 isoform 1
precursor [Homo sapiens]
Length = 367
Score = 34.7 bits (78), Expect = 0.024
Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 15/80 (18%)
Query: 29 PQHCD-SSECKSSP-RCK---RTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGP--GL 81
PQ C EC SP RC + D C CC++CA G+ C + C P GL
Sbjct: 46 PQFCKWPCECPPSPPRCPLGVSLITDGCECCKMCAQQLGDNC------TEAAICDPHRGL 99
Query: 82 RCQPSNGEDPFGEEFGICKE 101
C S + G+C +
Sbjct: 100 YCDYSGDRPRYA--IGVCAQ 117
>gi|18491000 WNT1 inducible signaling pathway protein 1 isoform 2
precursor [Homo sapiens]
Length = 280
Score = 34.3 bits (77), Expect = 0.031
Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 29 PQHCD-SSECKSSP-RCK---RTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGP--GL 81
PQ C EC SP RC + D C CC++CA G+ C + C P GL
Sbjct: 46 PQFCKWPCECPPSPPRCPLGVSLITDGCECCKMCAQQLGDNC------TEAAICDPHRGL 99
Query: 82 RCQPSNGEDPFGEEFGIC 99
C S + G+C
Sbjct: 100 YCDYSGDRPRYA--IGVC 115
>gi|119466532 laminin alpha 2 subunit isoform b precursor [Homo
sapiens]
Length = 3118
Score = 33.1 bits (74), Expect = 0.069
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 34 SSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFG 93
SS SP C LDD C G+ C R G G PG CQ DP+G
Sbjct: 1475 SSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPGNPGGSCQECEC-DPYG 1533
Score = 26.9 bits (58), Expect = 4.9
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 28 CPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPSN 87
CP + S+ + R++ C C V G C R G G PG CQP
Sbjct: 809 CPLNIPSNNFSPTCHLDRSLGLICDGCPV--GYTGPRCERCAEGYFGQPSVPGGSCQPCQ 866
Query: 88 GEDPFGEEFGICKEHDMASG 107
D +F I D SG
Sbjct: 867 CNDNL--DFSIPGSCDSLSG 884
Score = 26.6 bits (57), Expect = 6.4
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 25 AVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQ 84
AVD ++C C + G C A +G+ C + +G G++ G C
Sbjct: 909 AVDA-KNCQPCRCNAGGSFSEVCHSQTGQCECRANVQGQRCDKCKAGTFGLQSARG--CV 965
Query: 85 PSNGEDPFGEEFGICKE 101
P N + FG + C+E
Sbjct: 966 PCNC-NSFGSKSFDCEE 981
>gi|28559088 laminin alpha 2 subunit isoform a precursor [Homo
sapiens]
Length = 3122
Score = 33.1 bits (74), Expect = 0.069
Identities = 21/60 (35%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 34 SSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFG 93
SS SP C LDD C G+ C R G G PG CQ DP+G
Sbjct: 1475 SSSNNFSPSCVAEGLDDYRCTACPRGYEGQYCERCAPGYTGSPGNPGGSCQECEC-DPYG 1533
Score = 26.9 bits (58), Expect = 4.9
Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 28 CPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPSN 87
CP + S+ + R++ C C V G C R G G PG CQP
Sbjct: 809 CPLNIPSNNFSPTCHLDRSLGLICDGCPV--GYTGPRCERCAEGYFGQPSVPGGSCQPCQ 866
Query: 88 GEDPFGEEFGICKEHDMASG 107
D +F I D SG
Sbjct: 867 CNDNL--DFSIPGSCDSLSG 884
Score = 26.6 bits (57), Expect = 6.4
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 25 AVDCPQHCDSSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQ 84
AVD ++C C + G C A +G+ C + +G G++ G C
Sbjct: 909 AVDA-KNCQPCRCNAGGSFSEVCHSQTGQCECRANVQGQRCDKCKAGTFGLQSARG--CV 965
Query: 85 PSNGEDPFGEEFGICKE 101
P N + FG + C+E
Sbjct: 966 PCNC-NSFGSKSFDCEE 981
>gi|122937343 platelet endothelial aggregation receptor 1 [Homo
sapiens]
Length = 1037
Score = 30.8 bits (68), Expect = 0.34
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 21/79 (26%)
Query: 25 AVDCPQHCDSSECKSSPRCKRTVLDD-----CGC--------CRV-CAAGR-GETCYRTV 69
++ CP+ C RC L D C C CR C GR G+ C T
Sbjct: 260 SLPCPEGFHGPNCSQECRCHNGGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETC 319
Query: 70 SGMDGMKCGPGLRCQPSNG 88
C P RC P+NG
Sbjct: 320 D------CAPDARCFPANG 332
>gi|122937283 6720455I24Rik homolog [Homo sapiens]
Length = 1413
Score = 30.4 bits (67), Expect = 0.44
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 31 HCDSSECKSSPRCKRTVLDDCGC----CRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPS 86
H D +EC S P C+ G C+ A G TC S D +C G +CQ
Sbjct: 309 HLDVNECASQP-CQNGGTCTHGINSFRCQCPAGFGGPTCETAQSPCDTKECQHGGQCQVE 367
Query: 87 NG 88
NG
Sbjct: 368 NG 369
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 32 CDSSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLRCQPSNG 88
C + C++ C+ L CR A G C V D C G RC+ G
Sbjct: 795 CRAHPCRNGGSCRN--LPGAYVCRCPAGFVGVHCETEVDACDSSPCQHGGRCESGGG 849
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 29.6 bits (65), Expect = 0.76
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 32 CDSSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGLR 82
CD C + C + + CC VC G + +G++G K G R
Sbjct: 70 CDDVICDETKNCPGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPR 120
>gi|126012571 heparan sulfate proteoglycan 2 [Homo sapiens]
Length = 4391
Score = 29.6 bits (65), Expect = 0.76
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 49 DDCGCCRVCAAG-RGETCYRTVSGMDGMKCGPGLRCQPSNGEDPFGEEFGICKEHDMASG 107
D C CA G G C G +G PG +C+P N E +E G A
Sbjct: 834 DGQATCDACAPGYTGRRCESCAPGYEGNPIQPGGKCRPVNQEIVRCDERGSMGTSGEACR 893
Query: 108 DGNIVREEVVKENAAGS 124
N V + E A GS
Sbjct: 894 CKNNVVGRLCNECADGS 910
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 29.6 bits (65), Expect = 0.76
Identities = 17/50 (34%), Positives = 19/50 (38%)
Query: 32 CDSSECKSSPRCKRTVLDDCGCCRVCAAGRGETCYRTVSGMDGMKCGPGL 81
CD EC+ C V CC VC+ G G G K PGL
Sbjct: 71 CDKIECQDVLDCADPVTPPGECCPVCSQTPGGGNTNFGRGRKGQKGEPGL 120
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,441,903
Number of Sequences: 37866
Number of extensions: 323308
Number of successful extensions: 759
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 677
Number of HSP's gapped (non-prelim): 121
length of query: 134
length of database: 18,247,518
effective HSP length: 91
effective length of query: 43
effective length of database: 14,801,712
effective search space: 636473616
effective search space used: 636473616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.