Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GFI1B Sequence: fasta or formatted (284aa) NCBI GI: 205277345
Description:

growth factor independent 1B transcription repressor isoform 2

Referenced in:

Hematopoiesis and Erythrocytes
Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [330aa] growth factor independent 1B transcription repressor isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         13           1
 C cysteine            3.9         11           1
 D aspartate           4.6         13           1
 E glutamate           4.6         13           1
 F phenylalanine       4.9         14           1
 G glycine             3.9         11           1
 H histidine           5.3         15           1
 I isoleucine          1.4          4           1
 K lysine              7.4         21           2
 L leucine             8.5         24           2
 M methionine          2.1          6           1
 N asparagine          2.5          7           1
 P proline             9.9         28           2
 Q glutamine           5.3         15           1
 R arginine            6.3         18           2
 S serine             11.3         32           2
 T threonine           6.0         17           2
 V valine              3.5         10           1
 W tryptophan          1.1          3           1
 Y tyrosine            3.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth factor independent 1B transcription represso... 
GFI1B                 0.962   growth factor independent 1B transcription represso...
GFI1                  0.360   growth factor independent 1 
GFI1                  0.360   growth factor independent 1 
GFI1                  0.360   growth factor independent 1 
ZNF253                0.198   zinc finger protein 253 
ZNF431                0.191   zinc finger protein 431 
ZNF91                 0.191   zinc finger protein 91 
ZNF98                 0.189   zinc finger protein 98 
ZNF714                0.189   zinc finger protein 714 
ZNF493                0.188   zinc finger protein 493 isoform 1 
ZNF493                0.188   zinc finger protein 493 isoform 3 
ZNF93                 0.188   zinc finger protein 93 
ZNF626                0.186   zinc finger protein 626 isoform 1 
LOC100292052          0.184   PREDICTED: similar to hCG1773661 
LOC100287226          0.184   PREDICTED: similar to hCG1773661 
LOC100287226          0.184   PREDICTED: hypothetical protein XP_002343677 
ZNF836                0.184   zinc finger protein 836 
FEZF2                 0.184   FEZ family zinc finger 2 
LOC730110             0.184   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.184   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
LOC730110             0.184   PREDICTED: Zinc finger protein ENSP00000351689 [Hom...
ZNF43                 0.184   zinc finger protein 43 
ZNF85                 0.184   zinc finger protein 85 
ZNF726                0.184   PREDICTED: zinc finger protein 726 
ZNF66                 0.184   PREDICTED: zinc finger protein 66 
ZNF726                0.184   PREDICTED: zinc finger protein 726 
ZNF66                 0.184   PREDICTED: zinc finger protein 66 
ZNF726                0.184   PREDICTED: zinc finger protein 726 
ZNF66                 0.184   PREDICTED: zinc finger protein 66 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press