Guide to the Human Genome
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Name: C14orf148 Sequence: fasta or formatted (250aa) NCBI GI: 20302040
Description:

hypothetical protein LOC122945 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {359aa} hypothetical protein LOC122945 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         17           2
 C cysteine            2.8          7           2
 D aspartate           3.2          8           1
 E glutamate           5.6         14           2
 F phenylalanine       4.0         10           2
 G glycine             7.2         18           3
 H histidine           2.8          7           1
 I isoleucine          6.4         16           2
 K lysine              3.6          9           1
 L leucine            14.4         36           3
 M methionine          1.2          3           1
 N asparagine          4.0         10           1
 P proline             6.0         15           1
 Q glutamine           4.8         12           1
 R arginine            4.0         10           2
 S serine              8.4         21           2
 T threonine           4.0         10           1
 V valine              4.4         11           1
 W tryptophan          1.6          4           1
 Y tyrosine            4.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC122945 isoform 2 
C14orf148             0.895   hypothetical protein LOC122945 isoform 1 
PYCR1                 0.055   pyrroline-5-carboxylate reductase 1 isoform 1 
PYCR1                 0.055   pyrroline-5-carboxylate reductase 1 isoform 2 
PYCRL                 0.047   pyrroline-5-carboxylate reductase-like 
PYCR2                 0.039   pyrroline-5-carboxylate reductase family, member 2 [...
PCDH15                0.016   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.016   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.016   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.016   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.016   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.016   protocadherin 15 isoform CD2-1 precursor 
PCDH15                0.016   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.016   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.016   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.016   protocadherin 15 isoform CD1-6 precursor 
PCDH15                0.016   protocadherin 15 isoform CD1-2 precursor 
PCDH15                0.016   protocadherin 15 isoform CD1-1 precursor 
N-PAC                 0.016   cytokine-like nuclear factor n-pac 
STEAP3                0.008   dudulin 2 isoform b 
STEAP3                0.008   dudulin 2 isoform a 
STEAP3                0.008   dudulin 2 isoform b 
MTO1                  0.006   mitochondrial translation optimization 1 homolog is...
MTO1                  0.006   mitochondrial translation optimization 1 homolog iso...
MTO1                  0.006   mitochondrial translation optimization 1 homolog iso...
CHDH                  0.006   choline dehydrogenase 
USP17L3               0.006   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
USP17L4               0.006   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
RNF115                0.006   Rabring 7 
ANKRD11               0.006   ankyrin repeat domain 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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