Search of human proteins with 20270371

Search of human proteins with 20270371

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20270371 carboxymethylenebutenolidase [Homo sapiens]
         (245 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20270371 carboxymethylenebutenolidase [Homo sapiens]               516   e-147
gi|44771201 integrator complex subunit 5 [Homo sapiens]                32   0.66 
gi|189095271 phospholipase A2, group VII [Homo sapiens]                30   1.9  
gi|59710109 hypothetical protein LOC51300 [Homo sapiens]               29   4.3  

>gi|20270371 carboxymethylenebutenolidase [Homo sapiens]
          Length = 245

 Score =  516 bits (1330), Expect = e-147
 Identities = 245/245 (100%), Positives = 245/245 (100%)

Query: 1   MANEAYPCPCDIGHRLEYGGLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTR 60
           MANEAYPCPCDIGHRLEYGGLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTR
Sbjct: 1   MANEAYPCPCDIGHRLEYGGLGREVQVEHIKAYVTKSPVDAGKAVIVIQDIFGWQLPNTR 60

Query: 61  YIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQ 120
           YIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQ
Sbjct: 61  YIADMISGNGYTTIVPDFFVGQEPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQ 120

Query: 121 CHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDV 180
           CHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDV
Sbjct: 121 CHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYGIVKDSEDIYNLKNPTLFIFAENDV 180

Query: 181 VIPLKDVSLLTQKLKEHCKVEYQIKTFSGQTHGFVHRKREDCSPADKPYIDEARRNLIEW 240
           VIPLKDVSLLTQKLKEHCKVEYQIKTFSGQTHGFVHRKREDCSPADKPYIDEARRNLIEW
Sbjct: 181 VIPLKDVSLLTQKLKEHCKVEYQIKTFSGQTHGFVHRKREDCSPADKPYIDEARRNLIEW 240

Query: 241 LNKYM 245
           LNKYM
Sbjct: 241 LNKYM 245


>gi|44771201 integrator complex subunit 5 [Homo sapiens]
          Length = 1019

 Score = 31.6 bits (70), Expect = 0.66
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 87  PSGDWSIF-----------PEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWG 134
           P G WS+F           P+++++RN Q++     ++L  L   C A      G CWG
Sbjct: 742 PGGIWSVFHAGVIGRGLKPPKFVQSRNQQEVIYNTQSLLSLLVHCCSAPGGTECGECWG 800


>gi|189095271 phospholipase A2, group VII [Homo sapiens]
          Length = 441

 Score = 30.0 bits (66), Expect = 1.9
 Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 114 LKYLKQQCHAQKIGIVGFCWGGTAVHHLMMKYSEFRAGVSVYG-IVKDSEDIYN-LKNPT 171
           ++ LK     +KI ++G  +GG  V   + +   FR G+++   +    +++Y+ +  P 
Sbjct: 255 MEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQRFRCGIALDAWMFPLGDEVYSRIPQPL 314

Query: 172 LFIFAE 177
            FI +E
Sbjct: 315 FFINSE 320


>gi|59710109 hypothetical protein LOC51300 [Homo sapiens]
          Length = 285

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 83  EPWDPSGDWSIFPEWLKTRNAQKIDREISAILKYLKQQCHAQKIGIVGFCWGG-TAVHHL 141
           EP+ P   W    E       Q+I ++++ I K       A   GI+G+ +GG  A  H 
Sbjct: 47  EPYYPESGWDRLRELFGKDEQQRISKDLANICK------TAATAGIIGWVYGGIPAFIHA 100

Query: 142 MMKYSE 147
             +Y E
Sbjct: 101 KQQYIE 106


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,480,496
Number of Sequences: 37866
Number of extensions: 406312
Number of successful extensions: 805
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 4
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.