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Search of human proteins with 194473681
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194473681 mercaptopyruvate sulfurtransferase isoform 2 [Homo
sapiens]
(297 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61835204 mercaptopyruvate sulfurtransferase isoform 2 [Homo s... 620 e-178
gi|194473681 mercaptopyruvate sulfurtransferase isoform 2 [Homo ... 620 e-178
gi|194473668 mercaptopyruvate sulfurtransferase isoform 1 [Homo ... 620 e-178
gi|17402865 thiosulfate sulfurtransferase [Homo sapiens] 377 e-105
gi|163965377 putative thiosulfate sulfurtransferase KAT isoform ... 36 0.036
gi|47716687 zinc finger protein 167 isoform 1 [Homo sapiens] 33 0.39
gi|47716685 zinc finger protein 167 isoform 2 [Homo sapiens] 33 0.39
gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens] 32 0.88
gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens] 32 0.88
gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens] 31 1.1
gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens] 31 1.1
gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens] 31 1.1
gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens] 31 1.1
gi|163965371 putative thiosulfate sulfurtransferase KAT isoform ... 31 1.1
gi|7661862 protein phosphatase 1F [Homo sapiens] 30 2.0
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens] 30 2.6
gi|109638751 ubiquitin specific protease 6 [Homo sapiens] 29 4.4
gi|85797660 limkain b1 [Homo sapiens] 29 4.4
gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens] 29 5.7
gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens] 29 5.7
gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens] 29 5.7
gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens] 29 5.7
gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Hom... 29 5.7
gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Hom... 29 5.7
gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo s... 28 9.7
>gi|61835204 mercaptopyruvate sulfurtransferase isoform 2 [Homo
sapiens]
Length = 297
Score = 620 bits (1598), Expect = e-178
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
Sbjct: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
Sbjct: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
Query: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
Sbjct: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
Query: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
Sbjct: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
Query: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
Sbjct: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
>gi|194473681 mercaptopyruvate sulfurtransferase isoform 2 [Homo
sapiens]
Length = 297
Score = 620 bits (1598), Expect = e-178
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
Sbjct: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
Query: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
Sbjct: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
Query: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
Sbjct: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
Query: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
Sbjct: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
Query: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
Sbjct: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
>gi|194473668 mercaptopyruvate sulfurtransferase isoform 1 [Homo
sapiens]
Length = 317
Score = 620 bits (1598), Expect = e-178
Identities = 297/297 (100%), Positives = 297/297 (100%)
Query: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF
Sbjct: 21 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 80
Query: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF
Sbjct: 81 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 140
Query: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV
Sbjct: 141 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 200
Query: 181 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 240
VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL
Sbjct: 201 VDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL 260
Query: 241 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 297
SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH
Sbjct: 261 SKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGKTH 317
>gi|17402865 thiosulfate sulfurtransferase [Homo sapiens]
Length = 297
Score = 377 bits (969), Expect = e-105
Identities = 176/296 (59%), Positives = 224/296 (75%), Gaps = 2/296 (0%)
Query: 1 MASPQLCRALVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFF 60
M L RALVS +W+AE++R + G L++LDASWY P R+AR+E+ ERH+PGA+FF
Sbjct: 1 MVHQVLYRALVSTKWLAESIRTGKLGPGLRVLDASWYSPGT-REARKEYLERHVPGASFF 59
Query: 61 DIDQCSDRTSPYDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAF 120
DI++C D SPY+ MLP FAEY GRLG+ THVV+YD G + APRVWWMFR F
Sbjct: 60 DIEECRDTASPYEMMLPSEAGFAEYVGRLGISNHTHVVVYDGEHLGSFYAPRVWWMFRVF 119
Query: 121 GHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQV 180
GH VS+L+GG R+WL++ P++S S+P PA F+A LD + +KTYE + ENLES+RFQ+
Sbjct: 120 GHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPAVFKATLDRSLLKTYEQVLENLESKRFQL 179
Query: 181 VDSRATGRFRGTEPEP-RDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVD 239
VDSR+ GRF GTEPEP G++ GHI G VN+PF DFL+++G EK PEE+R LFQ KKVD
Sbjct: 180 VDSRSQGRFLGTEPEPDAVGLDSGHIRGAVNMPFMDFLTEDGFEKGPEELRALFQTKKVD 239
Query: 240 LSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDVISEGRGK 295
LS+PL+ATC GVTACHVAL AYLCGKPDV +YDGSW EW+ RA PE +S+G+ +
Sbjct: 240 LSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWFRRAPPESRVSQGKSE 295
>gi|163965377 putative thiosulfate sulfurtransferase KAT isoform 1
[Homo sapiens]
Length = 115
Score = 36.2 bits (82), Expect = 0.036
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 185 ATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL-SKP 243
A+GR R + R+ G IPG +NIP ++ + L+ P + L+ +K L +
Sbjct: 17 ASGRARLFDVRSREEAAAGTIPGALNIPVSEL--ESALQMEPAAFQALYSAEKPKLEDEH 74
Query: 244 LVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEW 279
LV C G A G Y G++ EW
Sbjct: 75 LVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREW 110
>gi|47716687 zinc finger protein 167 isoform 1 [Homo sapiens]
Length = 754
Score = 32.7 bits (73), Expect = 0.39
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 125 VSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSR 184
+S+L G LR W++ + P S ++ +F+ L + E++ + + ++
Sbjct: 103 LSILPGELRTWVQLHHPESGEEAVAVVEDFQRHLSGS-----EEVSAPAQKQEMHFEETT 157
Query: 185 ATGRFRGTEPE--------PRDGIEPGHIPGTVNIPFTDF 216
A G + + P P +EP + PGT ++P DF
Sbjct: 158 ALGTTKESPPTSPLSGGSAPGAHLEPPYDPGTHHLPSGDF 197
>gi|47716685 zinc finger protein 167 isoform 2 [Homo sapiens]
Length = 276
Score = 32.7 bits (73), Expect = 0.39
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 125 VSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSR 184
+S+L G LR W++ + P S ++ +F+ L + E++ + + ++
Sbjct: 103 LSILPGELRTWVQLHHPESGEEAVAVVEDFQRHLSGS-----EEVSAPAQKQEMHFEETT 157
Query: 185 ATGRFRGTEPE--------PRDGIEPGHIPGTVNIPFTDF 216
A G + + P P +EP + PGT ++P DF
Sbjct: 158 ALGTTKESPPTSPLSGGSAPGAHLEPPYDPGTHHLPSGDF 197
>gi|47132553 fibronectin 1 isoform 5 preproprotein [Homo sapiens]
Length = 2296
Score = 31.6 bits (70), Expect = 0.88
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 143 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582
Query: 203 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTA 254
G P ++ EGL+ + E + ++ + S+PLV T + + A
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTTIPA 1634
>gi|47132549 fibronectin 1 isoform 6 preproprotein [Homo sapiens]
Length = 2176
Score = 31.6 bits (70), Expect = 0.88
Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 143 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582
Query: 203 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGVTA 254
G P ++ EGL+ + E + ++ + S+PLV T + + A
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTTIPA 1634
>gi|16933542 fibronectin 1 isoform 3 preproprotein [Homo sapiens]
Length = 2355
Score = 31.2 bits (69), Expect = 1.1
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 143 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582
Query: 203 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 252
G P ++ EGL+ + E + ++ + S+PLV T + +
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1632
>gi|47132557 fibronectin 1 isoform 1 preproprotein [Homo sapiens]
Length = 2477
Score = 31.2 bits (69), Expect = 1.1
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 143 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1618 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1673
Query: 203 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 252
G P ++ EGL+ + E + ++ + S+PLV T + +
Sbjct: 1674 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1723
>gi|47132555 fibronectin 1 isoform 4 preproprotein [Homo sapiens]
Length = 2330
Score = 31.2 bits (69), Expect = 1.1
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 143 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1527 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1582
Query: 203 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 252
G P ++ EGL+ + E + ++ + S+PLV T + +
Sbjct: 1583 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1632
>gi|47132551 fibronectin 1 isoform 2 preproprotein [Homo sapiens]
Length = 2421
Score = 31.2 bits (69), Expect = 1.1
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 143 SSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEP 202
S S+P +R ++D D+++N S ++ S TG +R T P++G P
Sbjct: 1618 SPASSKPISINYRTEIDKPSQMQVTDVQDNSISVKWLPSSSPVTG-YRVT-TTPKNG--P 1673
Query: 203 GHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVATCGSGV 252
G P ++ EGL+ + E + ++ + S+PLV T + +
Sbjct: 1674 GPTKTKTAGPDQTEMTIEGLQPTVEYVVSVYAQNPSGESQPLVQTAVTNI 1723
>gi|163965371 putative thiosulfate sulfurtransferase KAT isoform 3
[Homo sapiens]
Length = 109
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 185 ATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDL-SKP 243
A+GR R + R+ G IPG +NIP ++ + L+ P + L+ +K L +
Sbjct: 17 ASGRARLFDVRSREEAAAGTIPGALNIPVSEL--ESALQMEPAAFQALYSAEKPKLEDEH 74
Query: 244 LVATCGSG 251
LV C G
Sbjct: 75 LVFFCQMG 82
>gi|7661862 protein phosphatase 1F [Homo sapiens]
Length = 454
Score = 30.4 bits (67), Expect = 2.0
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 11 VSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTS 70
V+ QW + A RA Q L+ R+ RR+ E+RH+ +F + SD +
Sbjct: 136 VAGQWQKQVPLAARASQRQWLVSIHAI-----RNTRRKMEDRHVSLPSFNQLFGLSDPVN 190
Query: 71 PYDHMLPGAEHFAEYAGRLGVGAATHVVIY 100
+FA + G GV AA + ++
Sbjct: 191 --------RAYFAVFDGHGGVDAARYAAVH 212
>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 30.0 bits (66), Expect = 2.6
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 48 EFEERHIPGAAFFDIDQCSDRTSPYDHM--LPGAEHFAEYAGRLGVGAATHVVIYDASDQ 105
E++E I GAAF C D T+ + G E + A GA +V+YD ++Q
Sbjct: 47 EYQESTI-GAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQ 105
Query: 106 GLYSAPRVW 114
++ + W
Sbjct: 106 ETFARAKTW 114
>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
Length = 1406
Score = 29.3 bits (64), Expect = 4.4
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 191 GTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLF-QEKKVDL-SKPLVATC 248
GTE +G+ GH+P + PFT ++ + E+ L QE + L PL+ C
Sbjct: 848 GTEKNFTNGMVNGHMPSLPDSPFTGYIIAVHRKMMRTELYFLSPQENRPSLFGMPLIVPC 907
Query: 249 GSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARP 285
H K D +YD W++ ARP
Sbjct: 908 -----TVHTR-------KKD--LYDAVWIQVSWLARP 930
>gi|85797660 limkain b1 [Homo sapiens]
Length = 1742
Score = 29.3 bits (64), Expect = 4.4
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 12/152 (7%)
Query: 100 YDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEFRAQLD 159
+ + ++ L + P+V W+ + GH + +L ++ L +L LS + P+E L+
Sbjct: 1530 HSSVEELLGAIPQVVWI-KGHGHKRIVVLKNDMKSRL-SSLSLSPANHENQPSEGERILE 1587
Query: 160 PAFIKTYEDIK--------ENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNI 211
T ++K + E ++ D P P P P V +
Sbjct: 1588 VPESHTASELKLGADGSGPSHTEQELLRLTDDSPVDLL--CAPVPSCLPSPQLRPDPVIL 1645
Query: 212 PFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKP 243
D + E + P EI L QE+K+++ P
Sbjct: 1646 QSADLIQFEERPQEPSEIMILNQEEKMEIPIP 1677
>gi|24234729 semaphorin 6D isoform 1 precursor [Homo sapiens]
Length = 1011
Score = 28.9 bits (63), Expect = 5.7
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 164 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 212
KT + +K + E + T +F + P P + GHIP + +P
Sbjct: 721 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 769
>gi|24234741 semaphorin 6D isoform 4 precursor [Homo sapiens]
Length = 1073
Score = 28.9 bits (63), Expect = 5.7
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 164 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 212
KT + +K + E + T +F + P P + GHIP + +P
Sbjct: 783 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 831
>gi|24234738 semaphorin 6D isoform 3 precursor [Homo sapiens]
Length = 1017
Score = 28.9 bits (63), Expect = 5.7
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 164 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 212
KT + +K + E + T +F + P P + GHIP + +P
Sbjct: 727 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 775
>gi|24234735 semaphorin 6D isoform 2 precursor [Homo sapiens]
Length = 998
Score = 28.9 bits (63), Expect = 5.7
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 164 KTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIP 212
KT + +K + E + T +F + P P + GHIP + +P
Sbjct: 708 KTLQAMKSHSEKAHGHGASRKETPQFFPSSPPPHSPLSHGHIPSAIVLP 756
>gi|27894344 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 28.9 bits (63), Expect = 5.7
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 119 AFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEF 154
+FGH + S GLR W Q LP +SG QP PA F
Sbjct: 157 SFGHFSPSQTYEGLRAWTEQ-LPKASGPPQP-PAFF 190
>gi|21361342 nuclear receptor subfamily 4, group A, member 1 [Homo
sapiens]
Length = 598
Score = 28.9 bits (63), Expect = 5.7
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 119 AFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAPAEF 154
+FGH + S GLR W Q LP +SG QP PA F
Sbjct: 157 SFGHFSPSQTYEGLRAWTEQ-LPKASGPPQP-PAFF 190
>gi|59814247 budding uninhibited by benzimidazoles 1 beta [Homo
sapiens]
Length = 1050
Score = 28.1 bits (61), Expect = 9.7
Identities = 43/149 (28%), Positives = 52/149 (34%), Gaps = 33/149 (22%)
Query: 146 KSQPA-PAEFRAQLDP-AFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPG 203
KS PA P AQ P A +KT E I N + V F G EP D I G
Sbjct: 542 KSPPADPPRVLAQRRPLAVLKTSESITSNED------VSPDVCDEFTGIEPLSEDAIITG 595
Query: 204 HIPGT-----------------VNIPFTDFLSQEGLEKSPEEIRHLFQEKKVDLSKPLVA 246
T V+ PF + +S + L PE L E+ +D V
Sbjct: 596 FRNVTICPNPEDTCDFARAARFVSTPFHEIMSLKDLPSDPE---RLLPEEDLD-----VK 647
Query: 247 TCGSGVTACHVALGAYLCGKPDVPIYDGS 275
T TAC L K PI + S
Sbjct: 648 TSEDQQTACGTIYSQTLSIKKLSPIIEDS 676
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,147,339
Number of Sequences: 37866
Number of extensions: 636347
Number of successful extensions: 1448
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1435
Number of HSP's gapped (non-prelim): 26
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.