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Search of human proteins with 194353953
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194353953 hypothetical protein LOC729246 [Homo sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752488 PREDICTED: FLJ40296 protein family member [Homo sap... 467 e-132
gi|38348198 proline rich 20 [Homo sapiens] 467 e-132
gi|194353955 hypothetical protein LOC729250 [Homo sapiens] 467 e-132
gi|194353953 hypothetical protein LOC729246 [Homo sapiens] 467 e-132
gi|194353951 hypothetical protein LOC729240 [Homo sapiens] 467 e-132
gi|194353949 hypothetical protein LOC729233 [Homo sapiens] 467 e-132
gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens] 219 1e-57
gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens] 219 1e-57
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 59 3e-09
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 52 4e-07
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 51 9e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 51 9e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 50 2e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 50 2e-06
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 48 6e-06
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 48 6e-06
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 48 6e-06
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 48 6e-06
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 48 8e-06
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 47 1e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 47 1e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 47 1e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 47 2e-05
gi|19924099 synapsin I isoform Ia [Homo sapiens] 47 2e-05
gi|19924097 synapsin I isoform Ib [Homo sapiens] 47 2e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 47 2e-05
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 46 2e-05
>gi|239752488 PREDICTED: FLJ40296 protein family member [Homo
sapiens]
Length = 221
Score = 467 bits (1202), Expect = e-132
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
Query: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV
Sbjct: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
Query: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY
Sbjct: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
>gi|38348198 proline rich 20 [Homo sapiens]
Length = 221
Score = 467 bits (1202), Expect = e-132
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
Query: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV
Sbjct: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
Query: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY
Sbjct: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
>gi|194353955 hypothetical protein LOC729250 [Homo sapiens]
Length = 221
Score = 467 bits (1202), Expect = e-132
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
Query: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV
Sbjct: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
Query: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY
Sbjct: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
>gi|194353953 hypothetical protein LOC729246 [Homo sapiens]
Length = 221
Score = 467 bits (1202), Expect = e-132
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
Query: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV
Sbjct: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
Query: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY
Sbjct: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
>gi|194353951 hypothetical protein LOC729240 [Homo sapiens]
Length = 221
Score = 467 bits (1202), Expect = e-132
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
Query: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV
Sbjct: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
Query: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY
Sbjct: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
>gi|194353949 hypothetical protein LOC729233 [Homo sapiens]
Length = 221
Score = 467 bits (1202), Expect = e-132
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR
Sbjct: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG
Sbjct: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
Query: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV
Sbjct: 121 EPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPV 180
Query: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY
Sbjct: 181 LTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVFLTDIAY 221
>gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 219 bits (559), Expect = 1e-57
Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR
Sbjct: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119
+PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H
Sbjct: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
Query: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q
Sbjct: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
Query: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215
+L P + FR G S+ L+++QT T VQ VPVF
Sbjct: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
>gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 219 bits (559), Expect = 1e-57
Identities = 117/216 (54%), Positives = 139/216 (64%), Gaps = 13/216 (6%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
MEEPR SKR R +APNQASGGPP EPGC V+ + P P QPAKP AYVKP RR
Sbjct: 1 MEEPRHSKRPRFLAPNQASGGPPTEPGC------SGVDREDPVDPVQPAKPTAYVKPMRR 54
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH-IQLDHH 119
+PPAR + PPA RG+R GGS R GRGRG AG G+R G P ++ + L+ H
Sbjct: 55 EPPARAQPAPPAGRGQRGGGSWRAGRGRGSGAGLLRALGERVG------PGMYLVHLNDH 108
Query: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
GE G+QG+ E +T AFS +E PG VQEGPGP AQPE+G QEPP APGP AV Q
Sbjct: 109 GELGYQGQLEARQTPAFSFTEAALMPGIVQEGPGPHAAQPEVGLQEPPPAPGPVAVARQT 168
Query: 180 VLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPVF 215
+L P + FR G S+ L+++QT T VQ VPVF
Sbjct: 169 MLAPSPSLSFRPPGGSSTLRIVQTSNSTIVQSVPVF 204
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 58.9 bits (141), Expect = 3e-09
Identities = 58/189 (30%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 4 PRPSKRLRSMAPNQA---SGGPPPEPGCCVADP-EGSVEADGPAQPAQPAKPIAYVKPFR 59
PRP K P Q S GPPP PG P +G ++ GP P +P KP
Sbjct: 115 PRPGKP--EGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP--PPRPGKPEGPPPQGG 170
Query: 60 RQP------PARPESPPPAERGRRRGGSRRPGR-------GRGRRAGPRGDAGQRQG--A 104
Q P +PE PPP + +G RPG+ G + GP G+ +G +
Sbjct: 171 NQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPS 230
Query: 105 EGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQ 164
+G P G P H G+P+ + + PPPG Q GP P P+
Sbjct: 231 QGGNKP--------QGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQ-GPPPPGGNPQQPL- 280
Query: 165 EPPAAPGPQ 173
PP A PQ
Sbjct: 281 -PPPAGKPQ 288
Score = 50.4 bits (119), Expect = 1e-06
Identities = 57/201 (28%), Positives = 76/201 (37%), Gaps = 25/201 (12%)
Query: 4 PRPSKRLRSMAPN--QASGGPPPEPGCCVADP-EGSVEADGPA-QPAQPAKPIAYVKPFR 59
PRP K P S GPPP PG P +G ++ GP +P +P P
Sbjct: 94 PRPGKP-EGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQS 152
Query: 60 RQPPARP---ESPPPAERGRRRGGSRRPGRGRG-------RRAGPRGDAGQRQGAEGLMA 109
+ PP RP E PPP + +G PG+ G + GP G+ +G
Sbjct: 153 QGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEG------ 206
Query: 110 PDVHIQLDHHGEPGHQGEPEITETAAFSLSETGPP-PGTVQEGPGPDVAQPELGFQEPPA 168
P G P G+PE + + + PP PG Q P + +P+ PP
Sbjct: 207 PPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQR--PPPPG 264
Query: 169 AP-GPQAVDWQPVLTLYPCIG 188
P GP P L P G
Sbjct: 265 RPQGPPPPGGNPQQPLPPPAG 285
Score = 46.2 bits (108), Expect = 2e-05
Identities = 46/168 (27%), Positives = 57/168 (33%), Gaps = 33/168 (19%)
Query: 11 RSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPP 70
R NQ PPP PG PEG G P +P +PE PP
Sbjct: 40 RPQGGNQPQRTPPP-PG----KPEGRPPQGGNQSQGPPPRP------------GKPEGPP 82
Query: 71 PAERGRRRGGSRRPGR-------GRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPG 123
P + +G RPG+ G + GP G+ +G P G P
Sbjct: 83 PQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEG------PPPQGGNQSQGPPP 136
Query: 124 HQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPG 171
G+PE + S+ PP EGP P G PP PG
Sbjct: 137 RPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQG---PPPHPG 181
Score = 38.1 bits (87), Expect = 0.006
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 20/96 (20%)
Query: 4 PRPSKRLRSMAPNQASG---GPPPEPGCCVADPEGSVEADG--PAQPAQPAKPIAYVKPF 58
PRP K P+Q GPPP PG P+G +G P +P P +P P
Sbjct: 220 PRPGKP--EGPPSQGGNKPQGPPPHPG----KPQGPPPQEGNKPQRPPPPGRPQGPPPPG 273
Query: 59 RRQ-----PPA-RPESPPPAERGRRRGGSRRPGRGR 88
PPA +P+ PPP +G G RP +G+
Sbjct: 274 GNPQQPLPPPAGKPQGPPPPPQG---GRPHRPPQGQ 306
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 52.0 bits (123), Expect = 4e-07
Identities = 47/165 (28%), Positives = 63/165 (38%), Gaps = 30/165 (18%)
Query: 21 GPPPEPGCCVADP-EGSVEADGPAQPAQPAKPIAYVKPFR--RQPPARPESPPPAERGRR 77
GPPP PG P +G + GP P +P P R R PP +P+ PPP +
Sbjct: 49 GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQP 108
Query: 78 RGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFS 137
+G PG+ + GP G R +G P G+P QG P + +
Sbjct: 109 QGPPPPPGKPQ----GPPPQGGNR--PQGPPPP---------GKP--QGPPPQGDKSRSP 151
Query: 138 LSETGPPPGTVQEG----------PGPDVAQPELGFQEPPAAPGP 172
S G P G +G PG P G ++P P P
Sbjct: 152 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPP 196
Score = 50.8 bits (120), Expect = 9e-07
Identities = 42/163 (25%), Positives = 57/163 (34%), Gaps = 7/163 (4%)
Query: 16 NQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFR--RQPPARPESPPPAE 73
NQ G PPP P+G GP P +P P R R PP +P+ PPP
Sbjct: 106 NQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQG 165
Query: 74 RGRRRGGSRRPGRGRGR--RAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEIT 131
+ +G PG+ +G + G + G P PG +P+
Sbjct: 166 GNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPG---KPQGP 222
Query: 132 ETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQA 174
+ + PPP +GP P G P GP A
Sbjct: 223 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPA 265
Score = 50.8 bits (120), Expect = 9e-07
Identities = 47/167 (28%), Positives = 63/167 (37%), Gaps = 24/167 (14%)
Query: 16 NQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFR--RQPPARPESPPPAE 73
NQ G PPP P+G + GP P +P P R + PP +P+ PPP
Sbjct: 167 NQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQG 226
Query: 74 RGRRRGGSRRPGRGRG-------RRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQG 126
+ +G PG+ +G + GP G+ QG G+P QG
Sbjct: 227 GNQPQGPPPPPGKPQGPPPQGGNKPQGP-PPPGKPQGPPAQGGSKSQSARSPPGKP--QG 283
Query: 127 EPEITETAAFSLSETGPPP---GTVQEGPGPDVAQPELGFQEPPAAP 170
P+ + GPPP G Q+ P QP Q PP P
Sbjct: 284 PPQQEGN-----NPQGPPPPAGGNPQQPQAPPAGQP----QGPPRPP 321
Score = 39.7 bits (91), Expect = 0.002
Identities = 34/120 (28%), Positives = 48/120 (40%), Gaps = 16/120 (13%)
Query: 62 PPARPESPPPAERGRRRGGSRRPGRGRG------RRAGPRGDAGQRQGAEGLMAPDVHIQ 115
PP +P+ PPP + G + G PG+ +G + PR G+ QG P
Sbjct: 53 PPGKPQGPPP-QGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQG------PPPQGG 105
Query: 116 LDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGP--DVAQPELGFQEPPAAPGPQ 173
G P G+P+ + + PPPG Q GP P D ++ P P PQ
Sbjct: 106 NQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQ-GPPPQGDKSRSPRSPPGKPQGPPPQ 164
Score = 39.3 bits (90), Expect = 0.003
Identities = 32/115 (27%), Positives = 42/115 (36%), Gaps = 17/115 (14%)
Query: 4 PRPSKRLRSMAPNQASGGPPPEPGCCV------------ADPEGSVEADGPAQPAQPAKP 51
P+ K S +P GPPP+ G P+G + GP P +P P
Sbjct: 204 PQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 263
Query: 52 IAY---VKPFRRQPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQG 103
A R PP +P+ PP E +G P G + AGQ QG
Sbjct: 264 PAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP--PPAGGNPQQPQAPPAGQPQG 316
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 50.8 bits (120), Expect = 9e-07
Identities = 55/166 (33%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGG 80
GP EPG P G A GPA + K A R +P PP ERG
Sbjct: 468 GPKGEPG-----PAGPQGAPGPA--GEEGKRGA-----RGEPGGVGPIGPPGERG---AP 512
Query: 81 SRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSE 140
R G+ AGP+G G+R G GL P +G+PG GEP +
Sbjct: 513 GNRGFPGQDGLAGPKGAPGER-GPSGLAGPK-----GANGDPGRPGEPGLPGARGL---- 562
Query: 141 TGPPPGTVQEGP-GPDVAQPELGFQEPPAAPGPQAVDWQPVLTLYP 185
TG P +G GP A E G P PGPQ QP + +P
Sbjct: 563 TGRPGDAGPQGKVGPSGAPGEDG---RPGPPGPQGARGQPGVMGFP 605
Score = 42.7 bits (99), Expect = 2e-04
Identities = 47/161 (29%), Positives = 57/161 (35%), Gaps = 27/161 (16%)
Query: 35 GSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESP----------PPAERGR--RRGGSR 82
G+ DGP + PA P P + PP P P +RG +G
Sbjct: 723 GTPGTDGPKGASGPAGP-----PGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG 777
Query: 83 RPGRGRGRRA----GPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSL 138
PG+ GR GP G AG + P G PG +GE A F+
Sbjct: 778 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFA- 836
Query: 139 SETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
GPP Q PG Q E G + APGPQ P
Sbjct: 837 ---GPPGADGQ--PGAKGEQGEAGQKGDAGAPGPQGPSGAP 872
Score = 42.4 bits (98), Expect = 3e-04
Identities = 60/191 (31%), Positives = 71/191 (37%), Gaps = 35/191 (18%)
Query: 15 PNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESP----P 70
P SG P P+ V P+G+ A GP P P A R PP +P P
Sbjct: 865 PQGPSGAPGPQGPTGVTGPKGARGAQGP--PGATGFPGA---AGRVGPPGSNGNPGPPGP 919
Query: 71 PAERGR-----RRGGSRRPGR----GRGRRAGPRGDAGQ-----RQGAEGLMAPD-VHIQ 115
P G+ RG S PGR G AGP G+ G+ GAEG P + Q
Sbjct: 920 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQ 979
Query: 116 LDHHGEPGHQGE----------PEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQE 165
G PG +GE E + A S PPG V PG E G +
Sbjct: 980 RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP-PGLTGPAGEPGREG 1038
Query: 166 PPAAPGPQAVD 176
P A GP D
Sbjct: 1039 SPGADGPPGRD 1049
Score = 41.6 bits (96), Expect = 5e-04
Identities = 50/171 (29%), Positives = 56/171 (32%), Gaps = 28/171 (16%)
Query: 16 NQASGGP--PPEPGCCVADP--EGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPP 71
N GP PP P P G+ A G A P P P R P P SP P
Sbjct: 346 NDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGP--RGEPGTPGSPGP 403
Query: 72 AERGRRRGGSRRPGRGRGRRA----------GPRGDAGQRQGAEGLMAPDVHIQLDHHGE 121
A G PG A GPRG G QGA G + P
Sbjct: 404 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP-QGATGPLGPK---------- 452
Query: 122 PGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGP 172
G GEP I + P P Q PGP + + G + P GP
Sbjct: 453 -GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGP 502
Score = 41.6 bits (96), Expect = 5e-04
Identities = 57/189 (30%), Positives = 70/189 (37%), Gaps = 47/189 (24%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPA--RPESP-PPAERGRR 77
GP EPG EGS ADGP P + A VK R + A P +P PP G
Sbjct: 1029 GPAGEPG-----REGSPGADGP--PGRDGA--AGVKGDRGETGAVGAPGAPGPPGSPGPA 1079
Query: 78 RGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPD-VHIQLDHHGEPGHQG---------- 126
++ RG GP G +G GA G+ P GEPG +G
Sbjct: 1080 GPTGKQGDRGEAGAQGPMGPSGPA-GARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGL 1138
Query: 127 -------EPEITETAAFSLSETGP--PPGTV----QEG----------PGPDVAQPELGF 163
P + A+ +GP PPG V ++G PGP E G
Sbjct: 1139 QGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGP 1198
Query: 164 QEPPAAPGP 172
PP PGP
Sbjct: 1199 AGPPGNPGP 1207
Score = 36.6 bits (83), Expect = 0.017
Identities = 35/122 (28%), Positives = 41/122 (33%), Gaps = 20/122 (16%)
Query: 62 PPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGE 121
P + ES P E G R G R GP G AG R + G+
Sbjct: 305 PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR---------------GNDGQ 349
Query: 122 PGHQGEPEITETAAFSLSETGPPPGTVQEGP----GPDVAQPELGFQEPPAAPGPQAVDW 177
PG G P A G P + GP GP+ AQ G P +PGP
Sbjct: 350 PGPAGPPGPVGPAG-GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASG 408
Query: 178 QP 179
P
Sbjct: 409 NP 410
Score = 33.1 bits (74), Expect = 0.19
Identities = 47/162 (29%), Positives = 60/162 (37%), Gaps = 13/162 (8%)
Query: 21 GPPPEPGCC-VADPEGSVEADG-PAQPAQPAKPIAYVKPFRRQPPARP-ESPPPAERGRR 77
G P E G +A P+G+ G P +P P +P P + S P E GR
Sbjct: 528 GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRP 587
Query: 78 RGGSRRPGRGRGRRA-----GPRGDAGQ--RQGAEGLM-APDVHIQLDHHGEPGHQGEPE 129
G P RG+ GP+G G+ + G +GL AP + GE G G P
Sbjct: 588 --GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 645
Query: 130 ITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPG 171
A + P P Q PGP E G PG
Sbjct: 646 PAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 687
Score = 32.7 bits (73), Expect = 0.25
Identities = 44/164 (26%), Positives = 55/164 (33%), Gaps = 29/164 (17%)
Query: 28 CCVADPEGSVEADG-PAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGGSRRPGR 86
CC P A G P Q +P + P P+ P E+G R R +
Sbjct: 85 CCPICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPA-GEQGPR---GDRGDK 140
Query: 87 GRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLS-----ET 141
G GPRG G+ G G P G PG G P + A ++ +
Sbjct: 141 GEKGAPGPRGRDGE-PGTPGNPGPP--------GPPGPPGPPGLGGNFAAQMAGGFDEKA 191
Query: 142 GPPPGTVQEGP----------GPDVAQPELGFQEPPAAPGPQAV 175
G V +GP GP A GFQ P PG V
Sbjct: 192 GGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGV 235
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 50.8 bits (120), Expect = 9e-07
Identities = 55/166 (33%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGG 80
GP EPG P G A GPA + K A R +P PP ERG
Sbjct: 399 GPKGEPG-----PAGPQGAPGPA--GEEGKRGA-----RGEPGGVGPIGPPGERG---AP 443
Query: 81 SRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSE 140
R G+ AGP+G G+R G GL P +G+PG GEP +
Sbjct: 444 GNRGFPGQDGLAGPKGAPGER-GPSGLAGPK-----GANGDPGRPGEPGLPGARGL---- 493
Query: 141 TGPPPGTVQEGP-GPDVAQPELGFQEPPAAPGPQAVDWQPVLTLYP 185
TG P +G GP A E G P PGPQ QP + +P
Sbjct: 494 TGRPGDAGPQGKVGPSGAPGEDG---RPGPPGPQGARGQPGVMGFP 536
Score = 42.7 bits (99), Expect = 2e-04
Identities = 47/161 (29%), Positives = 57/161 (35%), Gaps = 27/161 (16%)
Query: 35 GSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESP----------PPAERGR--RRGGSR 82
G+ DGP + PA P P + PP P P +RG +G
Sbjct: 654 GTPGTDGPKGASGPAGP-----PGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG 708
Query: 83 RPGRGRGRRA----GPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSL 138
PG+ GR GP G AG + P G PG +GE A F+
Sbjct: 709 APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFA- 767
Query: 139 SETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
GPP Q PG Q E G + APGPQ P
Sbjct: 768 ---GPPGADGQ--PGAKGEQGEAGQKGDAGAPGPQGPSGAP 803
Score = 42.4 bits (98), Expect = 3e-04
Identities = 60/191 (31%), Positives = 71/191 (37%), Gaps = 35/191 (18%)
Query: 15 PNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESP----P 70
P SG P P+ V P+G+ A GP P P A R PP +P P
Sbjct: 796 PQGPSGAPGPQGPTGVTGPKGARGAQGP--PGATGFPGA---AGRVGPPGSNGNPGPPGP 850
Query: 71 PAERGR-----RRGGSRRPGR----GRGRRAGPRGDAGQ-----RQGAEGLMAPD-VHIQ 115
P G+ RG S PGR G AGP G+ G+ GAEG P + Q
Sbjct: 851 PGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQ 910
Query: 116 LDHHGEPGHQGE----------PEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQE 165
G PG +GE E + A S PPG V PG E G +
Sbjct: 911 RGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGP-PGLTGPAGEPGREG 969
Query: 166 PPAAPGPQAVD 176
P A GP D
Sbjct: 970 SPGADGPPGRD 980
Score = 41.6 bits (96), Expect = 5e-04
Identities = 50/171 (29%), Positives = 56/171 (32%), Gaps = 28/171 (16%)
Query: 16 NQASGGP--PPEPGCCVADP--EGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPP 71
N GP PP P P G+ A G A P P P R P P SP P
Sbjct: 277 NDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGP--RGEPGTPGSPGP 334
Query: 72 AERGRRRGGSRRPGRGRGRRA----------GPRGDAGQRQGAEGLMAPDVHIQLDHHGE 121
A G PG A GPRG G QGA G + P
Sbjct: 335 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGP-QGATGPLGPK---------- 383
Query: 122 PGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGP 172
G GEP I + P P Q PGP + + G + P GP
Sbjct: 384 -GQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGP 433
Score = 41.6 bits (96), Expect = 5e-04
Identities = 57/189 (30%), Positives = 70/189 (37%), Gaps = 47/189 (24%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPA--RPESP-PPAERGRR 77
GP EPG EGS ADGP P + A VK R + A P +P PP G
Sbjct: 960 GPAGEPG-----REGSPGADGP--PGRDGA--AGVKGDRGETGAVGAPGAPGPPGSPGPA 1010
Query: 78 RGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPD-VHIQLDHHGEPGHQG---------- 126
++ RG GP G +G GA G+ P GEPG +G
Sbjct: 1011 GPTGKQGDRGEAGAQGPMGPSGPA-GARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGL 1069
Query: 127 -------EPEITETAAFSLSETGP--PPGTV----QEG----------PGPDVAQPELGF 163
P + A+ +GP PPG V ++G PGP E G
Sbjct: 1070 QGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGP 1129
Query: 164 QEPPAAPGP 172
PP PGP
Sbjct: 1130 AGPPGNPGP 1138
Score = 36.6 bits (83), Expect = 0.017
Identities = 35/122 (28%), Positives = 41/122 (33%), Gaps = 20/122 (16%)
Query: 62 PPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGE 121
P + ES P E G R G R GP G AG R + G+
Sbjct: 236 PGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGAR---------------GNDGQ 280
Query: 122 PGHQGEPEITETAAFSLSETGPPPGTVQEGP----GPDVAQPELGFQEPPAAPGPQAVDW 177
PG G P A G P + GP GP+ AQ G P +PGP
Sbjct: 281 PGPAGPPGPVGPAG-GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASG 339
Query: 178 QP 179
P
Sbjct: 340 NP 341
Score = 33.1 bits (74), Expect = 0.19
Identities = 47/162 (29%), Positives = 60/162 (37%), Gaps = 13/162 (8%)
Query: 21 GPPPEPGCC-VADPEGSVEADG-PAQPAQPAKPIAYVKPFRRQPPARP-ESPPPAERGRR 77
G P E G +A P+G+ G P +P P +P P + S P E GR
Sbjct: 459 GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRP 518
Query: 78 RGGSRRPGRGRGRRA-----GPRGDAGQ--RQGAEGLM-APDVHIQLDHHGEPGHQGEPE 129
G P RG+ GP+G G+ + G +GL AP + GE G G P
Sbjct: 519 --GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPG 576
Query: 130 ITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPG 171
A + P P Q PGP E G PG
Sbjct: 577 PAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 618
Score = 32.0 bits (71), Expect = 0.43
Identities = 38/138 (27%), Positives = 50/138 (36%), Gaps = 22/138 (15%)
Query: 60 RQPPARPESPPPAERGRRRGGSRRPG-RGRGRRAGPRGDAGQR--QGAEGLMAPDVHIQL 116
RQP + + P + G PG +G GPRGD G + +GA G D
Sbjct: 29 RQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGT 88
Query: 117 DHH----GEPGHQGEPEITETAAFSLS-----ETGPPPGTVQEGP----------GPDVA 157
+ G PG G P + A ++ + G V +GP GP A
Sbjct: 89 PGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGA 148
Query: 158 QPELGFQEPPAAPGPQAV 175
GFQ P PG V
Sbjct: 149 PGPQGFQGNPGEPGEPGV 166
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 50.1 bits (118), Expect = 2e-06
Identities = 48/183 (26%), Positives = 63/183 (34%), Gaps = 29/183 (15%)
Query: 16 NQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFR--RQPPARPESPPPA- 72
NQ G PPP P+G + GP P +P P R R PP +P+ PPP
Sbjct: 66 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQG 125
Query: 73 -------------------ERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAE---GLMAP 110
+ G + G PG+ +G P+GD R P
Sbjct: 126 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG--PPPQGDNKSRSSRSPPGKPQGP 183
Query: 111 DVHIQLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAP 170
G P G+P+ + + PPPG Q GP P + PP P
Sbjct: 184 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ-GPPPQGDNKSQSARSPPGKP 242
Query: 171 -GP 172
GP
Sbjct: 243 QGP 245
Score = 49.7 bits (117), Expect = 2e-06
Identities = 48/185 (25%), Positives = 68/185 (36%), Gaps = 24/185 (12%)
Query: 6 PSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPA---QPAKPIAYVKPFRRQP 62
P + +S +P G P P P+G + GP P Q P KP P
Sbjct: 102 PPQGDKSRSPRSPPGKPQGPP------PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP 155
Query: 63 PARPESPPPAERGRRRGGSRRPGRGRG-------RRAGPRGDAGQRQG--AEGLMAPDVH 113
P +P+ PPP + R PG+ +G + GP G+ QG +G P
Sbjct: 156 PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGP 215
Query: 114 IQLDHHGEPGHQGEPEITETAAFSLSETGPPP--GTVQEGPGPDVAQPE----LGFQEPP 167
P QG+ + + GPPP G +GP P +P+ G +P
Sbjct: 216 PPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 275
Query: 168 AAPGP 172
P P
Sbjct: 276 GPPPP 280
Score = 47.8 bits (112), Expect = 8e-06
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 27/161 (16%)
Query: 16 NQASGGPPPEPGCCVADPEGSVEADGPAQPA---QPAKPIAYVKPFRRQPPARPESPPPA 72
+Q++ PP +P P+G + GP P Q P KP PP +P+ PPP
Sbjct: 232 SQSARSPPGKPQG--PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP- 288
Query: 73 ERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITE 132
+ G + SR P G+ GP G + G P G+P+
Sbjct: 289 QGGSKSRSSRSP---PGKPQGPPPQGGNQP----------------QGPPPPPGKPQGPP 329
Query: 133 TAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAP-GP 172
+ + PPPG Q GP P + PP P GP
Sbjct: 330 PQGGNKPQGPPPPGKPQ-GPPPQGGSKSRSARSPPGKPQGP 369
Score = 40.0 bits (92), Expect = 0.002
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 16 NQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAY---VKPFRRQPPARPESPPPA 72
NQ G PPP P+G + GP P +P P R PP +P+ PP
Sbjct: 313 NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQ 372
Query: 73 ERGRRRGGSRRPGRGRGRRAGPRGDAGQRQG 103
E +G P G + AGQ QG
Sbjct: 373 EGNNPQGPP--PPAGGNPQQPQAPPAGQPQG 401
Score = 36.2 bits (82), Expect = 0.023
Identities = 38/174 (21%), Positives = 55/174 (31%), Gaps = 46/174 (26%)
Query: 26 PGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGGSRRPG 85
P +P+G+ G P+ PP +P+ PPP + +G PG
Sbjct: 29 PSLIAGNPQGAPPQGGNKPQGPPS------------PPGKPQGPPPQGGNQPQGPPPPPG 76
Query: 86 RGRG--------------------------RRAGPRGDAGQRQGAEGLMAPDVHIQLDHH 119
+ +G + PR G+ QG P
Sbjct: 77 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQG------PPPQGGNQPQ 130
Query: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAP-GP 172
G P G+P+ + + PPPG Q GP P + PP P GP
Sbjct: 131 GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQ-GPPPQGDNKSRSSRSPPGKPQGP 183
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 49.7 bits (117), Expect = 2e-06
Identities = 59/191 (30%), Positives = 68/191 (35%), Gaps = 44/191 (23%)
Query: 17 QASGGPPPEPGCCVADPEGSVEADGPAQP-AQPAKPIAYVKPFRRQPPARP-ESPPPAER 74
Q GPP EPG A GP P P P P RP E PP +
Sbjct: 199 QGFQGPPGEPG--------EPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ 250
Query: 75 GRR--------------RGGSRRPG-RGRGRRAGPRGDAGQ--RQGAEGLMAPDVHIQLD 117
G R RG S G +G AGP+G+ G GA G M P
Sbjct: 251 GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGP------- 303
Query: 118 HHGEPGHQGEPEITETAAF-----SLSETGPPPGTVQEGP----GPDVAQPELGFQEPPA 168
G PG +G P A + GPP T GP G A+ E G Q P
Sbjct: 304 -RGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRG 362
Query: 169 APGPQAVDWQP 179
+ GPQ V +P
Sbjct: 363 SEGPQGVRGEP 373
Score = 47.8 bits (112), Expect = 8e-06
Identities = 59/182 (32%), Positives = 62/182 (34%), Gaps = 34/182 (18%)
Query: 3 EPRPSKRLRSMAPNQASGGPPP--EPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
EP P P A G P EPG A +G GPA PA P PI V
Sbjct: 804 EPGPPGPAGFAGPPGADGQPGAKGEPGD--AGAKGDAGPPGPAGPAGPPGPIGNVGA-PG 860
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHG 120
AR + PP G R G AGP G G G EG P G
Sbjct: 861 AKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGP-AGKEGGKGP--------RG 911
Query: 121 EPGHQGEPEITETAAFSLSETGP--PPGTVQE--GPGPDVAQPELGFQEPPAAPGPQAVD 176
E G G P E GP PPG E PG D G P PGPQ +
Sbjct: 912 ETGPAGRP----------GEVGPPGPPGPAGEKGSPGAD------GPAGAPGTPGPQGIA 955
Query: 177 WQ 178
Q
Sbjct: 956 GQ 957
Score = 44.7 bits (104), Expect = 6e-05
Identities = 55/180 (30%), Positives = 67/180 (37%), Gaps = 35/180 (19%)
Query: 16 NQASGGPPPEPGCCVADPE-GSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAER 74
N G P G A E G V GP PA + R +P PP ER
Sbjct: 432 NSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGK----RGARGEPGPTGLPGPPGER 487
Query: 75 GRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEP-EITET 133
G G R G AGP+G AG+R G+ G P G PG G P E
Sbjct: 488 G---GPGSRGFPGADGVAGPKGPAGER-GSPGPAGP--------KGSPGEAGRPGEAGLP 535
Query: 134 AAFSLS----------ETGPPPGTVQEG----PGPDVAQPELGFQEPPAAPGPQAVDWQP 179
A L+ +TGPP Q+G PGP A+ + G PGP+ +P
Sbjct: 536 GAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVM---GFPGPKGAAGEP 592
Score = 44.3 bits (103), Expect = 8e-05
Identities = 55/184 (29%), Positives = 66/184 (35%), Gaps = 17/184 (9%)
Query: 4 PRPSKRLRSMAPNQASG-----GPPPEPGCCVADPEGSVEADGP----AQPAQPAKPIAY 54
P PS P+ ASG GP PG +A P G +G P + P A
Sbjct: 976 PGPSGEPGKQGPSGASGERGPPGPMGPPG--LAGPPGESGREGAPGAEGSPGRDGSPGAK 1033
Query: 55 VKPFRRQPPARPESP-PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVH 113
P P +P P G + RG AGP G G GA G P
Sbjct: 1034 GDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGP-VGARGPAGPQG- 1091
Query: 114 IQLDHHGEPGHQGEPEITETAAFSLSETGP-PPGTVQEGPGPDVAQPELGFQEPPAAPGP 172
GE G QG+ I FS + P PPG+ E GP A G + PP + G
Sbjct: 1092 -PRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGE-QGPSGASGPAGPRGPPGSAGA 1149
Query: 173 QAVD 176
D
Sbjct: 1150 PGKD 1153
Score = 44.3 bits (103), Expect = 8e-05
Identities = 48/158 (30%), Positives = 54/158 (34%), Gaps = 21/158 (13%)
Query: 21 GPPPEPGCCVAD-PEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESP-----PPAER 74
GPP PG A P G G PA P V P + PA P+ P E+
Sbjct: 1043 GPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQ 1102
Query: 75 GRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETA 134
G R R G GP G G+ QG G P G PG G P
Sbjct: 1103 GDRGIKGHRGFSGLQGPPGPPGSPGE-QGPSGASGP-----AGPRGPPGSAGAP-----G 1151
Query: 135 AFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGP 172
L+ P G PGP + G PP PGP
Sbjct: 1152 KDGLNGLPGPIGP----PGPRGRTGDAGPVGPPGPPGP 1185
Score = 43.5 bits (101), Expect = 1e-04
Identities = 54/163 (33%), Positives = 63/163 (38%), Gaps = 25/163 (15%)
Query: 19 SGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRR 78
+ GPP PG P G GP PA V P PA + P A+
Sbjct: 891 NAGPPGPPG-----PAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGAD----- 940
Query: 79 GGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSL 138
G + PG GP+G AGQR G GL P + G PG GEP + S
Sbjct: 941 GPAGAPGT-----PGPQGIAGQR-GVVGL--PGQRGERGFPGLPGPSGEPGKQGPSGAS- 991
Query: 139 SETGPPPGTVQEGPGPDVAQP--ELGFQEPPAAPGPQAVDWQP 179
E GPP GP P +A P E G + P A G D P
Sbjct: 992 GERGPPG---PMGP-PGLAGPPGESGREGAPGAEGSPGRDGSP 1030
Score = 42.4 bits (98), Expect = 3e-04
Identities = 57/205 (27%), Positives = 71/205 (34%), Gaps = 48/205 (23%)
Query: 15 PNQASGGPPPEPGCCVADPEGSV-EADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAE 73
P G P P A P+GS EA P + P P P + P PA
Sbjct: 507 PAGERGSPGP------AGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAG 560
Query: 74 RGRRRGGSRRPGRGRGRRA-----GPRGDAGQ--RQGAEGLMAPDVHI-QLDHHGEPGHQ 125
+ R G PG RG+ GP+G AG+ + G G+ P + GE G Q
Sbjct: 561 QDGRPGPPGPPG-ARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQ 619
Query: 126 GEPEITETAAFSLSETGP--------------PPGTVQE-----------GPGPDVAQPE 160
G P A E GP PPG + PGP A+ E
Sbjct: 620 GPPGPAGPAG-ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGE 678
Query: 161 LGF------QEPPAAPGPQAVDWQP 179
GF Q PP GP+ + P
Sbjct: 679 RGFPGERGVQGPPGPAGPRGANGAP 703
Score = 38.9 bits (89), Expect = 0.004
Identities = 51/185 (27%), Positives = 61/185 (32%), Gaps = 36/185 (19%)
Query: 20 GGPPPEPGCCVADPEGS----------VEA----DGPAQPAQPAKPIAY----VKPFRRQ 61
G PE CC P+GS VE GP P PA P +P
Sbjct: 83 GAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDGIPGQPGLPG 142
Query: 62 PPARPESPPPAERG-----RRRGGSRRPGRGRGRRAGPRGDAGQR--QGAEGLMAPDVHI 114
PP P P P G + G G GP G +G R G G P
Sbjct: 143 PPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQ--- 199
Query: 115 QLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQA 174
G PG GEP A+ + GPP + G + +P + P PGPQ
Sbjct: 200 --GFQGPPGEPGEP----GASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGP--PGPQG 251
Query: 175 VDWQP 179
P
Sbjct: 252 ARGLP 256
Score = 38.1 bits (87), Expect = 0.006
Identities = 57/177 (32%), Positives = 64/177 (36%), Gaps = 35/177 (19%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQP-PARPESPP-----PAER 74
GPP E G G ADG A P PA R P PA P+ P P E
Sbjct: 482 GPPGERGG--PGSRGFPGADGVAGPKGPAGE-------RGSPGPAGPKGSPGEAGRPGEA 532
Query: 75 GR--RRGGSRRPGR-GRGRRAGPRGDAGQ--RQGAEGLMAPDVHIQLDHHGEPGHQGEPE 129
G +G + PG G + GP G AGQ R G G P Q G PG +G
Sbjct: 533 GLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPG--PPGARGQAGVMGFPGPKGAAG 590
Query: 130 ITETAAFSLSETGPPPGTV-----------QEGPGPDVAQPELGFQEPPAAPGPQAV 175
E PPG V Q PGP E G Q P +PG Q +
Sbjct: 591 --EPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGL 645
Score = 37.7 bits (86), Expect = 0.008
Identities = 58/208 (27%), Positives = 69/208 (33%), Gaps = 36/208 (17%)
Query: 3 EPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGP--AQPAQPAKPIAYVKPF-R 59
E P S P G P P A P G+ ADG A+ A A IA F
Sbjct: 354 EAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPG 413
Query: 60 RQPPARPESP--PPAERGRR-----------RGGSRRPGR-GRGRRAGPRGDAGQR---- 101
+ P+ P+ P PP +G G PG G GP G+ G+R
Sbjct: 414 ARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARG 473
Query: 102 -QGAEGLMAPDVHIQLDHHGEPGHQGEPEITETA-----AFSLSETGP--PPGTVQEG-- 151
G GL P G PG +G P A A GP P G+ E
Sbjct: 474 EPGPTGLPGPP-----GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR 528
Query: 152 PGPDVAQPELGFQEPPAAPGPQAVDWQP 179
PG G P +PGP P
Sbjct: 529 PGEAGLPGAKGLTGSPGSPGPDGKTGPP 556
Score = 37.7 bits (86), Expect = 0.008
Identities = 50/161 (31%), Positives = 59/161 (36%), Gaps = 49/161 (30%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGG 80
GPP G A +G A GP PA PA ERG +G
Sbjct: 602 GPPGAVG--PAGKDGEAGAQGPPGPAGPA----------------------GERG-EQGP 636
Query: 81 SRRPG-RGRGRRAGPRGDAGQ--RQGAEG-LMAPDVHIQLDHHGEPGHQGEPEITETAAF 136
+ PG +G AGP G+AG+ QG G L AP G PG +G
Sbjct: 637 AGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERG---------- 686
Query: 137 SLSETGPP----PGTVQEGPGPDVAQPELGFQEPPAAPGPQ 173
GPP P PG D A+ + G P APG Q
Sbjct: 687 ---VQGPPGPAGPRGANGAPGNDGAKGDAG---APGAPGSQ 721
Score = 36.6 bits (83), Expect = 0.017
Identities = 50/184 (27%), Positives = 69/184 (37%), Gaps = 25/184 (13%)
Query: 13 MAPNQASG--GPPPEPGCCVA-DPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESP 69
M P G G P PG A +G+ A GP P PA P + + A P+ P
Sbjct: 301 MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGP 360
Query: 70 PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQ--RQGAEGLM-APDVHIQLDHHGE----- 121
+E + G P G AGP G+ G + GA+G AP + G
Sbjct: 361 RGSEGPQGVRGEPGPP-GPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSG 419
Query: 122 ----------PGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQ---EPPA 168
G+ GEP + + ++ P P VQ PGP + + G + P
Sbjct: 420 PQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTG 479
Query: 169 APGP 172
PGP
Sbjct: 480 LPGP 483
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 48.1 bits (113), Expect = 6e-06
Identities = 54/175 (30%), Positives = 69/175 (39%), Gaps = 24/175 (13%)
Query: 17 QASGGPPPEPGC-CVADP--EGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESP---- 69
Q GP E G C A P +G+V D +P QP P P P +P P
Sbjct: 711 QGPAGPKGEKGDGCTACPSLQGTV-TDMAGRPGQPG-PKGEQGPEGVGRPGKPGQPGLPG 768
Query: 70 ---PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQR--QGAEGLMAPDVHIQLDHHGEPGH 124
PP +G + G PGRG GP+G+ G G +GL P GE G
Sbjct: 769 VQGPPGLKGVQ-GEPGPPGRGV---QGPQGEPGAPGLPGIQGLPGP--RGPPGPTGEKGA 822
Query: 125 QGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
QG P + GPP +V PG D Q + G + P GP+ +P
Sbjct: 823 QGSPGVKGATG----PVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEP 873
Score = 35.8 bits (81), Expect = 0.030
Identities = 49/177 (27%), Positives = 59/177 (33%), Gaps = 45/177 (25%)
Query: 3 EPRPSKRLRSMAPNQASG--GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
+P P+ M P G G P PG P+G GP P +P A +P
Sbjct: 1229 DPGPAGPPGLMGPPGFKGKTGHPGLPG-----PKGDCGKPGP--PGSTGRPGAEGEPGAM 1281
Query: 61 QPPARPESP----PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQ--RQGAEGLMAPDVHI 114
P RP P PP G+ PG G +GD G +G GL
Sbjct: 1282 GPQGRPGPPGHVGPPGPPGQ-------PGPAGISAVGLKGDRGATGERGLAGLPGQP--- 1331
Query: 115 QLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPG 171
G PGH G P E G +EGP + GF PP G
Sbjct: 1332 -----GPPGHPGPP----------GEPGTDGAAGKEGP-----PGKQGFYGPPGPKG 1368
Score = 34.7 bits (78), Expect = 0.066
Identities = 35/120 (29%), Positives = 40/120 (33%), Gaps = 22/120 (18%)
Query: 11 RSMAPNQASGGPPPEPGCCVADPEGSVEADGPA-QPAQPAKPIAYVKPFRRQPPARPESP 69
R +A GPP PG P G DG A + P K Y P + P
Sbjct: 1322 RGLAGLPGQPGPPGHPG-----PPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQK 1376
Query: 70 PPAERGRRRGGSRRPGR-GRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEP 128
A R G PG+ G GP G AG+R H G PG G P
Sbjct: 1377 GQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGER---------------GHPGAPGPSGSP 1421
Score = 30.8 bits (68), Expect = 0.96
Identities = 38/116 (32%), Positives = 44/116 (37%), Gaps = 15/116 (12%)
Query: 71 PAERGRRRGGSRRPGR----GRGRRAGPRGDAGQ--RQGAEGLMAPDVHIQLDHHGEPGH 124
P E G PG+ GR G G GQ R+G +GL P V G PG
Sbjct: 1465 PMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGL--PGVR------GLPGT 1516
Query: 125 QGEP-EITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
+GE +I A GPP G G A +G Q P PGP QP
Sbjct: 1517 KGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQP 1572
Score = 28.1 bits (61), Expect = 6.2
Identities = 42/168 (25%), Positives = 54/168 (32%), Gaps = 35/168 (20%)
Query: 17 QASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGR 76
Q GP PG P G A G P+ PP S PP G+
Sbjct: 805 QGLPGPRGPPG-----PTGEKGAQGSPGVKGATGPVG--------PPGASVSGPPGRDGQ 851
Query: 77 RRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAF 136
+ + RG GPRG+ G+ D+ G G P + +++
Sbjct: 852 Q---GQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFS-------GMPGAPGLWMGSSW 901
Query: 137 SLSETGPP--PGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPVLT 182
GPP PG PGP G PG + QP LT
Sbjct: 902 QPGPQGPPGIPGP----PGPP------GVPGLQGVPGNNGLPGQPGLT 939
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 48.1 bits (113), Expect = 6e-06
Identities = 56/203 (27%), Positives = 71/203 (34%), Gaps = 39/203 (19%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIA------- 53
+ EP + LR P+ G PP PG P+G + DG A PA P P
Sbjct: 341 LAEPESAPTLRVEPPSPPEG--PPNPG-----PDGGKQ-DGEAPPAGPCAPATDKAEEVV 392
Query: 54 -----YVKPFRRQPPARPESPP---PAERGRRRGGSRRPGRGRGRRAGPRGDA--GQRQG 103
PF P +PP PA P R + A P + +G
Sbjct: 393 CAPEDVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKG 452
Query: 104 AEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGPP---------PGTVQEGPGP 154
G AP+ + + E G EPE T + PP P EGP
Sbjct: 453 PPG-PAPEPEREAETEPERGAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAAASEGPA- 510
Query: 155 DVAQPELGFQE-PPAAPGPQAVD 176
A P L E PP PGP ++D
Sbjct: 511 --ASPPLAAAESPPVEPGPGSLD 531
Score = 38.1 bits (87), Expect = 0.006
Identities = 55/197 (27%), Positives = 78/197 (39%), Gaps = 38/197 (19%)
Query: 3 EPRPSKRLRSMAPNQA-SGGPP---PEPG--------------CCVADPEGSVEADGP-A 43
E RPS + +AP++ GPP P PG + EG V + P +
Sbjct: 275 EERPSSGQQDVAPDRGPEPGPPAPLPPPGGARARRARLQHSSALTASVEEGGVPGEDPSS 334
Query: 44 QPAQP--AKPIAYVKPFRRQPPARPESPP-PAERGRRRGGSRRPGRGRGRRAGPRGDAGQ 100
+PA P A+P + R +PP+ PE PP P G ++ G P AGP A
Sbjct: 335 RPATPELAEPES-APTLRVEPPSPPEGPPNPGPDGGKQDGEAPP-------AGPCAPATD 386
Query: 101 RQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFS---LSETGPPPGTVQEG-PGPDV 156
+ E + AP+ P P T+ AA S + GP +E P P V
Sbjct: 387 K-AEEVVCAPEDVASPFPTAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPV 445
Query: 157 AQPELGFQEPPAAPGPQ 173
E ++ P P P+
Sbjct: 446 LPDE---EKGPPGPAPE 459
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 48.1 bits (113), Expect = 6e-06
Identities = 64/216 (29%), Positives = 79/216 (36%), Gaps = 42/216 (19%)
Query: 20 GGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPP-PAERGRRR 78
GGPP EPG G P P I + P P+ PP P +
Sbjct: 386 GGPPGEPG-----------LPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQ 434
Query: 79 GGSRRPG----------RGRGRRAGPRGDAGQR-----QGAEGLMAPDVHIQLDHHGEPG 123
G +PG RG GP+G+AGQ+ G GL+ P + G+ G
Sbjct: 435 GFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIP--GDQG 492
Query: 124 HQGEPEITETAAFSLSETGPP--PGTVQEGPG-------PDVAQPEL-GFQEPPAAPGPQ 173
QG P I S GPP PG E PG P + +P + G PP PG
Sbjct: 493 LQGPPGIPGIGGPS-GPIGPPGIPGPKGE-PGLPGPPGFPGIGKPGVAGLHGPPGKPGAL 550
Query: 174 AVDWQPVLTLYPCIGFRALGDSAVLQVIQTPQGTYV 209
QP L P G AV+ PQG Y+
Sbjct: 551 GPQGQPGLPGPPGPP-GPPGPPAVMPPTPPPQGEYL 585
Score = 36.6 bits (83), Expect = 0.017
Identities = 52/172 (30%), Positives = 66/172 (38%), Gaps = 31/172 (18%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPP-PAERGRRR- 78
G P EPG P+G + G P P P KP + P +P P E+G
Sbjct: 290 GAPGEPG-----PQGPIGVPGVQGP--PGIP-GIGKPGQDGIPGQPGFPGGKGEQGLPGL 341
Query: 79 -GGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEI----TET 133
G PG G+ GP+GD G G G + P GE G G P I E
Sbjct: 342 PGPPGLPGIGKPGFPGPKGDRGM-GGVPGALGP--------RGEKGPIGAPGIGGPPGEP 392
Query: 134 AAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPVLTLYP 185
+ PPG + PGP + E G P PGP+ +P L +P
Sbjct: 393 GLPGIPGPMGPPGAI-GFPGP---KGEGGIVGPQGPPGPKG---EPGLQGFP 437
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 48.1 bits (113), Expect = 6e-06
Identities = 64/216 (29%), Positives = 79/216 (36%), Gaps = 42/216 (19%)
Query: 20 GGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPP-PAERGRRR 78
GGPP EPG G P P I + P P+ PP P +
Sbjct: 386 GGPPGEPG-----------LPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQ 434
Query: 79 GGSRRPG----------RGRGRRAGPRGDAGQR-----QGAEGLMAPDVHIQLDHHGEPG 123
G +PG RG GP+G+AGQ+ G GL+ P + G+ G
Sbjct: 435 GFPGKPGFLGEVGPPGMRGLPGPIGPKGEAGQKGVPGLPGVPGLLGPKGEPGIP--GDQG 492
Query: 124 HQGEPEITETAAFSLSETGPP--PGTVQEGPG-------PDVAQPEL-GFQEPPAAPGPQ 173
QG P I S GPP PG E PG P + +P + G PP PG
Sbjct: 493 LQGPPGIPGIGGPS-GPIGPPGIPGPKGE-PGLPGPPGFPGIGKPGVAGLHGPPGKPGAL 550
Query: 174 AVDWQPVLTLYPCIGFRALGDSAVLQVIQTPQGTYV 209
QP L P G AV+ PQG Y+
Sbjct: 551 GPQGQPGLPGPPGPP-GPPGPPAVMPPTPPPQGEYL 585
Score = 36.6 bits (83), Expect = 0.017
Identities = 52/172 (30%), Positives = 66/172 (38%), Gaps = 31/172 (18%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPP-PAERGRRR- 78
G P EPG P+G + G P P P KP + P +P P E+G
Sbjct: 290 GAPGEPG-----PQGPIGVPGVQGP--PGIP-GIGKPGQDGIPGQPGFPGGKGEQGLPGL 341
Query: 79 -GGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEI----TET 133
G PG G+ GP+GD G G G + P GE G G P I E
Sbjct: 342 PGPPGLPGIGKPGFPGPKGDRGM-GGVPGALGP--------RGEKGPIGAPGIGGPPGEP 392
Query: 134 AAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPVLTLYP 185
+ PPG + PGP + E G P PGP+ +P L +P
Sbjct: 393 GLPGIPGPMGPPGAI-GFPGP---KGEGGIVGPQGPPGPKG---EPGLQGFP 437
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 47.8 bits (112), Expect = 8e-06
Identities = 46/176 (26%), Positives = 66/176 (37%), Gaps = 31/176 (17%)
Query: 4 PRPSKRLRS--MAPNQASGGPPPEPGCCVADPEGSVEADGPAQP-AQPAKPIAYVKPFRR 60
P P K R NQ+ G PPP P+G ++ P P +P +P +
Sbjct: 94 PHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQ 153
Query: 61 QPP---ARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLD 117
PP +PE PPP E + R PG+ +G P+ + + QG
Sbjct: 154 GPPPHPGKPEGPPPQEGNKSRSARSPPGKPQG---PPQQEGNKPQG-------------- 196
Query: 118 HHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQ 173
P G+P+ A + + PP +GP P P G + P A G Q
Sbjct: 197 ----PPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPP----PPQGGRPPRPAQGQQ 244
Score = 47.4 bits (111), Expect = 1e-05
Identities = 54/173 (31%), Positives = 65/173 (37%), Gaps = 39/173 (22%)
Query: 19 SGGPPPEPGCCVA-DPEGSVEADGPAQPAQPAKPIAYVKPFRRQ------PPARPESPPP 71
S GPPP PG P+G ++ GP P P KP Q PP +PE PPP
Sbjct: 68 SQGPPPPPGKPEGRPPQGGNQSQGP--PPHPGKPERPPPQGGNQSQGTPPPPGKPERPPP 125
Query: 72 AERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEIT 131
+G + P G+ R P+G Q QG P H G+PE
Sbjct: 126 --QGGNQSHRPPPPPGKPERPPPQG-GNQSQGP-----------------PPHPGKPEGP 165
Query: 132 ETAAFSLSETG-PPPG-----TVQEGPGPDVAQPELGFQEPPAAPG----PQA 174
+ S + PPG QEG P P Q PP A G PQA
Sbjct: 166 PPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQA 218
Score = 43.1 bits (100), Expect = 2e-04
Identities = 37/137 (27%), Positives = 46/137 (33%), Gaps = 31/137 (22%)
Query: 35 GSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGGSRRPGRGRGRRAGP 94
G E P QP +P PP +P+ PPP + +G PG+ GR P
Sbjct: 34 GKPEGRRPQGGNQPQRP--------PPPPGKPQGPPPQGGNQSQGPPPPPGKPEGR---P 82
Query: 95 RGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGP 154
Q QG P H G+PE + S+ PPP E P P
Sbjct: 83 PQGGNQSQGP-----------------PPHPGKPERPPPQGGNQSQGTPPPPGKPERPPP 125
Query: 155 DVAQPELGFQEPPAAPG 171
PP PG
Sbjct: 126 QGGNQS---HRPPPPPG 139
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 47.0 bits (110), Expect = 1e-05
Identities = 56/187 (29%), Positives = 67/187 (35%), Gaps = 41/187 (21%)
Query: 5 RPSKRLRSMA-PNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPP 63
RP + R A P +A+ GPP P G VEA + +QP
Sbjct: 70 RPPRENRKRAVPARAARGPPKRPA---GGQTGGVEAASGEERSQPR-------------- 112
Query: 64 ARPESPPPAERGRRRGGSRRPG---------RGRGRRAGPRGDAGQRQGAEGLMA----- 109
RP PPPA R R RR R +G R+G RGD G + G A
Sbjct: 113 -RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGDSGWSHGHTARVGGT 171
Query: 110 PDVHIQL------DHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGP-DVAQPELG 162
D L G G + EP E SL + PP T P D A P G
Sbjct: 172 GDSSAGLTTFPGSSRGGFSGREEEPR-RERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAG 230
Query: 163 FQEPPAA 169
+ PP A
Sbjct: 231 PEAPPPA 237
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 47.0 bits (110), Expect = 1e-05
Identities = 60/224 (26%), Positives = 77/224 (34%), Gaps = 37/224 (16%)
Query: 3 EPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKP--FRR 60
E P L P + G + G G++ A G P PA P P R
Sbjct: 1224 ENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRG 1283
Query: 61 QP----------------PARPESPP--PAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQ 102
P P P PP P RG + G GP G+ G++
Sbjct: 1284 LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEK- 1342
Query: 103 GAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGP-------GPD 155
G GL P G PG +GE I A+ + GPP GP GP
Sbjct: 1343 GDRGLPGPQ--------GSPGQKGEMGIPG-ASGPIGPGGPPGLPGPAGPKGAKGATGPG 1393
Query: 156 VAQPELGFQEPPAAPGPQAVDWQPVLTLYPCIGFRALGDSAVLQ 199
+ E G Q PP PGP QP+ P R++ S ++Q
Sbjct: 1394 GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQ 1437
Score = 45.1 bits (105), Expect = 5e-05
Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 80 GSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLS 139
G R P RG+R GPRG G + GA+G D HG PG +G P F
Sbjct: 752 GERGPTGPRGQR-GPRGATG-KSGAKGTSGGD-----GPHGPPGERGLPGPQGPNGFP-G 803
Query: 140 ETGPPPGTVQEG-PGPDVAQPELGFQEPPAAPGPQAV 175
GPP ++G PG + E+GFQ PGP V
Sbjct: 804 PKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGV 840
Score = 39.3 bits (90), Expect = 0.003
Identities = 47/161 (29%), Positives = 55/161 (34%), Gaps = 41/161 (25%)
Query: 17 QASGGPPPEPGCCVADPEGSVEADGP-AQPAQPAKPIAYVKPFRRQPPARPESPPPAERG 75
Q GPP PG V P+G+ GP + P P PP P A +
Sbjct: 829 QGKTGPPGPPG--VVGPQGAAGETGPMGERGHPGPP---------GPPGEQGLPGTAGKE 877
Query: 76 RRRGGSRRPGR-GRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETA 134
+G PG G+ AG RG G+R G PG G P +
Sbjct: 878 GTKGDPGPPGAPGKDGPAGLRGFPGER------------------GLPGTAGGPGLK--- 916
Query: 135 AFSLSETGP--PPGTVQEGPGPDVAQPELGFQEPPAAPGPQ 173
GP PPG PG A G PP PGPQ
Sbjct: 917 ----GNEGPSGPPGPAGS-PGERGAAGSGGPIGPPGRPGPQ 952
Score = 38.5 bits (88), Expect = 0.005
Identities = 40/123 (32%), Positives = 48/123 (39%), Gaps = 15/123 (12%)
Query: 65 RPESPPPAERGRR--RGGSRRPG-RGRGRRAGPRGDAGQR-----QGAEGLMAPDVHIQL 116
R E P RG+R RG + + G +G GP G G+R QG G P
Sbjct: 751 RGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKG--PP 808
Query: 117 DHHGEPGHQGEPEITETAAFSLSETGP--PPGTV--QEGPGPDVAQPELGFQEPPAAPGP 172
G+ G G P F +TGP PPG V Q G E G PP PG
Sbjct: 809 GPPGKDGLPGHPGQRGEVGFQ-GKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGE 867
Query: 173 QAV 175
Q +
Sbjct: 868 QGL 870
Score = 38.1 bits (87), Expect = 0.006
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 34/128 (26%)
Query: 63 PARPESP-----PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLD 117
P P P PP + GRR RG G +GD +G +GL P + +
Sbjct: 432 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD----RGFDGL--PGLPGEKG 485
Query: 118 HHGEPGHQGEPEITETAAFSLSETGPPPGTVQEG----------PGPDVAQPELGFQEPP 167
H G+ G QG P GPP + G PG + LG + PP
Sbjct: 486 HRGDTGAQGLP-------------GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPP 532
Query: 168 AAPGPQAV 175
PGP V
Sbjct: 533 GIPGPPGV 540
Score = 38.1 bits (87), Expect = 0.006
Identities = 55/182 (30%), Positives = 64/182 (35%), Gaps = 41/182 (22%)
Query: 11 RSMAPNQASGGPPPEPGCCVADPEGSVEADG-PAQPAQPAKPIAYVKPFRRQPPARPESP 69
R A + G P +PG +G DG P P + K R A+
Sbjct: 451 RGRAGADGARGMPGDPGV-----KGDRGFDGLPGLPGE--------KGHRGDTGAQGLPG 497
Query: 70 PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLD----HHGEPGHQ 125
PP E G R RG +GPRG G + G G+ P +D G G Q
Sbjct: 498 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPK-GPPGIPGPPGVRGMDGPQGPKGSLGPQ 556
Query: 126 GEPEITETAAFSLSETGPP-----PGTVQEGPGPDVA---QPELGFQEPPAAPGPQAVDW 177
GEP GPP PGT Q PGP A E G Q P PG D
Sbjct: 557 GEP-------------GPPGQQGTPGT-QGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDG 602
Query: 178 QP 179
P
Sbjct: 603 PP 604
Score = 37.7 bits (86), Expect = 0.008
Identities = 49/174 (28%), Positives = 62/174 (35%), Gaps = 33/174 (18%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQ----PAQPAKPIAYVKPFRR--QPPARPESPP--PA 72
G +PG P G+ DGPA P + P P + + P+ P P P
Sbjct: 878 GTKGDPG-----PPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPG 932
Query: 73 ERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITE 132
ERG G GR GP G AG++ G G P + G G QG +
Sbjct: 933 ERGAAGSGGPIGPPGRPGPQGPPGAAGEK-GVPGEKGP-----IGPTGRDGVQGPVGLPG 986
Query: 133 TAAFSLSETGPPPGTVQEGPGPDVAQP-------ELGFQEPPAAPGPQAVDWQP 179
A GPP ++G +V P G PP PGP QP
Sbjct: 987 PA-------GPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQP 1033
Score = 36.6 bits (83), Expect = 0.017
Identities = 41/142 (28%), Positives = 51/142 (35%), Gaps = 21/142 (14%)
Query: 21 GPPPEPGCCVADPEGSVEADGP-AQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRG 79
GPP E G P G A G + +P +P P E+ PP G+R
Sbjct: 1190 GPPGEGG-----PRGQDGAKGDRGEDGEPGQP--------GSPGPTGENGPPGPLGKRGP 1236
Query: 80 GSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLS 139
GR G +GD G GA G P + G G G P+ S+
Sbjct: 1237 AGSPGSEGRQGGKGAKGDPG-AIGAPGKTGP-----VGPAGPAGKPG-PDGLRGLPGSVG 1289
Query: 140 ETGPPPGTVQEGPGPDVAQPEL 161
+ G P T Q GP V P L
Sbjct: 1290 QQGRPGATGQAGPPGPVGPPGL 1311
Score = 36.2 bits (82), Expect = 0.023
Identities = 50/182 (27%), Positives = 60/182 (32%), Gaps = 24/182 (13%)
Query: 16 NQASGGPPPEPGCC--VADPEGSVEADGPAQPAQP-----AKPIAYVKPFRRQPPARPES 68
N+ GPP PG V P G+ ADG P AK + F P
Sbjct: 1014 NKGEHGPPGPPGPIGPVGQP-GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQ 1072
Query: 69 PPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHI----------QLDH 118
P G + G GPRG AG GA+G P + +
Sbjct: 1073 GLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPN-GADGPQGPPGGVGNLGPPGEKGEPGE 1131
Query: 119 HGEPGHQGEPEITETAAFSLSETGPPPGTVQEG-PGPDVAQPELGFQEPPAAPGPQAVDW 177
G PG QGEP + E G + Q G PGP + G P PGP
Sbjct: 1132 SGSPGIQGEPGVKGPR----GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG 1187
Query: 178 QP 179
P
Sbjct: 1188 DP 1189
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 47.0 bits (110), Expect = 1e-05
Identities = 60/224 (26%), Positives = 77/224 (34%), Gaps = 37/224 (16%)
Query: 3 EPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKP--FRR 60
E P L P + G + G G++ A G P PA P P R
Sbjct: 1203 ENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRG 1262
Query: 61 QP----------------PARPESPP--PAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQ 102
P P P PP P RG + G GP G+ G++
Sbjct: 1263 LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEK- 1321
Query: 103 GAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGP-------GPD 155
G GL P G PG +GE I A+ + GPP GP GP
Sbjct: 1322 GDRGLPGPQ--------GSPGQKGEMGIPG-ASGPIGPGGPPGLPGPAGPKGAKGATGPG 1372
Query: 156 VAQPELGFQEPPAAPGPQAVDWQPVLTLYPCIGFRALGDSAVLQ 199
+ E G Q PP PGP QP+ P R++ S ++Q
Sbjct: 1373 GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQ 1416
Score = 45.1 bits (105), Expect = 5e-05
Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 80 GSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLS 139
G R P RG+R GPRG G + GA+G D HG PG +G P F
Sbjct: 731 GERGPTGPRGQR-GPRGATG-KSGAKGTSGGD-----GPHGPPGERGLPGPQGPNGFP-G 782
Query: 140 ETGPPPGTVQEG-PGPDVAQPELGFQEPPAAPGPQAV 175
GPP ++G PG + E+GFQ PGP V
Sbjct: 783 PKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGV 819
Score = 39.3 bits (90), Expect = 0.003
Identities = 47/161 (29%), Positives = 55/161 (34%), Gaps = 41/161 (25%)
Query: 17 QASGGPPPEPGCCVADPEGSVEADGP-AQPAQPAKPIAYVKPFRRQPPARPESPPPAERG 75
Q GPP PG V P+G+ GP + P P PP P A +
Sbjct: 808 QGKTGPPGPPG--VVGPQGAAGETGPMGERGHPGPP---------GPPGEQGLPGTAGKE 856
Query: 76 RRRGGSRRPGR-GRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETA 134
+G PG G+ AG RG G+R G PG G P +
Sbjct: 857 GTKGDPGPPGAPGKDGPAGLRGFPGER------------------GLPGTAGGPGLK--- 895
Query: 135 AFSLSETGP--PPGTVQEGPGPDVAQPELGFQEPPAAPGPQ 173
GP PPG PG A G PP PGPQ
Sbjct: 896 ----GNEGPSGPPGPAGS-PGERGAAGSGGPIGPPGRPGPQ 931
Score = 38.5 bits (88), Expect = 0.005
Identities = 40/123 (32%), Positives = 48/123 (39%), Gaps = 15/123 (12%)
Query: 65 RPESPPPAERGRR--RGGSRRPG-RGRGRRAGPRGDAGQR-----QGAEGLMAPDVHIQL 116
R E P RG+R RG + + G +G GP G G+R QG G P
Sbjct: 730 RGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKG--PP 787
Query: 117 DHHGEPGHQGEPEITETAAFSLSETGP--PPGTV--QEGPGPDVAQPELGFQEPPAAPGP 172
G+ G G P F +TGP PPG V Q G E G PP PG
Sbjct: 788 GPPGKDGLPGHPGQRGEVGFQ-GKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGE 846
Query: 173 QAV 175
Q +
Sbjct: 847 QGL 849
Score = 38.1 bits (87), Expect = 0.006
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 34/128 (26%)
Query: 63 PARPESP-----PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLD 117
P P P PP + GRR RG G +GD +G +GL P + +
Sbjct: 411 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD----RGFDGL--PGLPGEKG 464
Query: 118 HHGEPGHQGEPEITETAAFSLSETGPPPGTVQEG----------PGPDVAQPELGFQEPP 167
H G+ G QG P GPP + G PG + LG + PP
Sbjct: 465 HRGDTGAQGLP-------------GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPP 511
Query: 168 AAPGPQAV 175
PGP V
Sbjct: 512 GIPGPPGV 519
Score = 38.1 bits (87), Expect = 0.006
Identities = 55/182 (30%), Positives = 64/182 (35%), Gaps = 41/182 (22%)
Query: 11 RSMAPNQASGGPPPEPGCCVADPEGSVEADG-PAQPAQPAKPIAYVKPFRRQPPARPESP 69
R A + G P +PG +G DG P P + K R A+
Sbjct: 430 RGRAGADGARGMPGDPGV-----KGDRGFDGLPGLPGE--------KGHRGDTGAQGLPG 476
Query: 70 PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLD----HHGEPGHQ 125
PP E G R RG +GPRG G + G G+ P +D G G Q
Sbjct: 477 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPK-GPPGIPGPPGVRGMDGPQGPKGSLGPQ 535
Query: 126 GEPEITETAAFSLSETGPP-----PGTVQEGPGPDVA---QPELGFQEPPAAPGPQAVDW 177
GEP GPP PGT Q PGP A E G Q P PG D
Sbjct: 536 GEP-------------GPPGQQGTPGT-QGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDG 581
Query: 178 QP 179
P
Sbjct: 582 PP 583
Score = 37.7 bits (86), Expect = 0.008
Identities = 49/174 (28%), Positives = 62/174 (35%), Gaps = 33/174 (18%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQ----PAQPAKPIAYVKPFRR--QPPARPESPP--PA 72
G +PG P G+ DGPA P + P P + + P+ P P P
Sbjct: 857 GTKGDPG-----PPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPG 911
Query: 73 ERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITE 132
ERG G GR GP G AG++ G G P + G G QG +
Sbjct: 912 ERGAAGSGGPIGPPGRPGPQGPPGAAGEK-GVPGEKGP-----IGPTGRDGVQGPVGLPG 965
Query: 133 TAAFSLSETGPPPGTVQEGPGPDVAQP-------ELGFQEPPAAPGPQAVDWQP 179
A GPP ++G +V P G PP PGP QP
Sbjct: 966 PA-------GPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQP 1012
Score = 36.6 bits (83), Expect = 0.017
Identities = 41/142 (28%), Positives = 51/142 (35%), Gaps = 21/142 (14%)
Query: 21 GPPPEPGCCVADPEGSVEADGP-AQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRG 79
GPP E G P G A G + +P +P P E+ PP G+R
Sbjct: 1169 GPPGEGG-----PRGQDGAKGDRGEDGEPGQP--------GSPGPTGENGPPGPLGKRGP 1215
Query: 80 GSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLS 139
GR G +GD G GA G P + G G G P+ S+
Sbjct: 1216 AGSPGSEGRQGGKGAKGDPG-AIGAPGKTGP-----VGPAGPAGKPG-PDGLRGLPGSVG 1268
Query: 140 ETGPPPGTVQEGPGPDVAQPEL 161
+ G P T Q GP V P L
Sbjct: 1269 QQGRPGATGQAGPPGPVGPPGL 1290
Score = 36.2 bits (82), Expect = 0.023
Identities = 50/182 (27%), Positives = 60/182 (32%), Gaps = 24/182 (13%)
Query: 16 NQASGGPPPEPGCC--VADPEGSVEADGPAQPAQP-----AKPIAYVKPFRRQPPARPES 68
N+ GPP PG V P G+ ADG P AK + F P
Sbjct: 993 NKGEHGPPGPPGPIGPVGQP-GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQ 1051
Query: 69 PPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHI----------QLDH 118
P G + G GPRG AG GA+G P + +
Sbjct: 1052 GLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPN-GADGPQGPPGGVGNLGPPGEKGEPGE 1110
Query: 119 HGEPGHQGEPEITETAAFSLSETGPPPGTVQEG-PGPDVAQPELGFQEPPAAPGPQAVDW 177
G PG QGEP + E G + Q G PGP + G P PGP
Sbjct: 1111 SGSPGIQGEPGVKGPR----GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG 1166
Query: 178 QP 179
P
Sbjct: 1167 DP 1168
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 47.0 bits (110), Expect = 1e-05
Identities = 60/224 (26%), Positives = 77/224 (34%), Gaps = 37/224 (16%)
Query: 3 EPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKP--FRR 60
E P L P + G + G G++ A G P PA P P R
Sbjct: 1310 ENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRG 1369
Query: 61 QP----------------PARPESPP--PAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQ 102
P P P PP P RG + G GP G+ G++
Sbjct: 1370 LPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEK- 1428
Query: 103 GAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGP-------GPD 155
G GL P G PG +GE I A+ + GPP GP GP
Sbjct: 1429 GDRGLPGPQ--------GSPGQKGEMGIPG-ASGPIGPGGPPGLPGPAGPKGAKGATGPG 1479
Query: 156 VAQPELGFQEPPAAPGPQAVDWQPVLTLYPCIGFRALGDSAVLQ 199
+ E G Q PP PGP QP+ P R++ S ++Q
Sbjct: 1480 GPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQ 1523
Score = 45.1 bits (105), Expect = 5e-05
Identities = 36/97 (37%), Positives = 44/97 (45%), Gaps = 9/97 (9%)
Query: 80 GSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLS 139
G R P RG+R GPRG G + GA+G D HG PG +G P F
Sbjct: 838 GERGPTGPRGQR-GPRGATG-KSGAKGTSGGD-----GPHGPPGERGLPGPQGPNGFP-G 889
Query: 140 ETGPPPGTVQEG-PGPDVAQPELGFQEPPAAPGPQAV 175
GPP ++G PG + E+GFQ PGP V
Sbjct: 890 PKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGV 926
Score = 39.3 bits (90), Expect = 0.003
Identities = 47/161 (29%), Positives = 55/161 (34%), Gaps = 41/161 (25%)
Query: 17 QASGGPPPEPGCCVADPEGSVEADGP-AQPAQPAKPIAYVKPFRRQPPARPESPPPAERG 75
Q GPP PG V P+G+ GP + P P PP P A +
Sbjct: 915 QGKTGPPGPPG--VVGPQGAAGETGPMGERGHPGPP---------GPPGEQGLPGTAGKE 963
Query: 76 RRRGGSRRPGR-GRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETA 134
+G PG G+ AG RG G+R G PG G P +
Sbjct: 964 GTKGDPGPPGAPGKDGPAGLRGFPGER------------------GLPGTAGGPGLK--- 1002
Query: 135 AFSLSETGP--PPGTVQEGPGPDVAQPELGFQEPPAAPGPQ 173
GP PPG PG A G PP PGPQ
Sbjct: 1003 ----GNEGPSGPPGPAGS-PGERGAAGSGGPIGPPGRPGPQ 1038
Score = 38.5 bits (88), Expect = 0.005
Identities = 40/123 (32%), Positives = 48/123 (39%), Gaps = 15/123 (12%)
Query: 65 RPESPPPAERGRR--RGGSRRPG-RGRGRRAGPRGDAGQR-----QGAEGLMAPDVHIQL 116
R E P RG+R RG + + G +G GP G G+R QG G P
Sbjct: 837 RGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKG--PP 894
Query: 117 DHHGEPGHQGEPEITETAAFSLSETGP--PPGTV--QEGPGPDVAQPELGFQEPPAAPGP 172
G+ G G P F +TGP PPG V Q G E G PP PG
Sbjct: 895 GPPGKDGLPGHPGQRGEVGFQ-GKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGE 953
Query: 173 QAV 175
Q +
Sbjct: 954 QGL 956
Score = 38.1 bits (87), Expect = 0.006
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 34/128 (26%)
Query: 63 PARPESP-----PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLD 117
P P P PP + GRR RG G +GD +G +GL P + +
Sbjct: 518 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD----RGFDGL--PGLPGEKG 571
Query: 118 HHGEPGHQGEPEITETAAFSLSETGPPPGTVQEG----------PGPDVAQPELGFQEPP 167
H G+ G QG P GPP + G PG + LG + PP
Sbjct: 572 HRGDTGAQGLP-------------GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPP 618
Query: 168 AAPGPQAV 175
PGP V
Sbjct: 619 GIPGPPGV 626
Score = 38.1 bits (87), Expect = 0.006
Identities = 55/182 (30%), Positives = 64/182 (35%), Gaps = 41/182 (22%)
Query: 11 RSMAPNQASGGPPPEPGCCVADPEGSVEADG-PAQPAQPAKPIAYVKPFRRQPPARPESP 69
R A + G P +PG +G DG P P + K R A+
Sbjct: 537 RGRAGADGARGMPGDPGV-----KGDRGFDGLPGLPGE--------KGHRGDTGAQGLPG 583
Query: 70 PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLD----HHGEPGHQ 125
PP E G R RG +GPRG G + G G+ P +D G G Q
Sbjct: 584 PPGEDGERGDDGEIGPRGLPGESGPRGLLGPK-GPPGIPGPPGVRGMDGPQGPKGSLGPQ 642
Query: 126 GEPEITETAAFSLSETGPP-----PGTVQEGPGPDVA---QPELGFQEPPAAPGPQAVDW 177
GEP GPP PGT Q PGP A E G Q P PG D
Sbjct: 643 GEP-------------GPPGQQGTPGT-QGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDG 688
Query: 178 QP 179
P
Sbjct: 689 PP 690
Score = 37.7 bits (86), Expect = 0.008
Identities = 49/174 (28%), Positives = 62/174 (35%), Gaps = 33/174 (18%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQ----PAQPAKPIAYVKPFRR--QPPARPESPP--PA 72
G +PG P G+ DGPA P + P P + + P+ P P P
Sbjct: 964 GTKGDPG-----PPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPG 1018
Query: 73 ERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITE 132
ERG G GR GP G AG++ G G P + G G QG +
Sbjct: 1019 ERGAAGSGGPIGPPGRPGPQGPPGAAGEK-GVPGEKGP-----IGPTGRDGVQGPVGLPG 1072
Query: 133 TAAFSLSETGPPPGTVQEGPGPDVAQP-------ELGFQEPPAAPGPQAVDWQP 179
A GPP ++G +V P G PP PGP QP
Sbjct: 1073 PA-------GPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQP 1119
Score = 36.6 bits (83), Expect = 0.017
Identities = 41/142 (28%), Positives = 51/142 (35%), Gaps = 21/142 (14%)
Query: 21 GPPPEPGCCVADPEGSVEADGP-AQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRG 79
GPP E G P G A G + +P +P P E+ PP G+R
Sbjct: 1276 GPPGEGG-----PRGQDGAKGDRGEDGEPGQP--------GSPGPTGENGPPGPLGKRGP 1322
Query: 80 GSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLS 139
GR G +GD G GA G P + G G G P+ S+
Sbjct: 1323 AGSPGSEGRQGGKGAKGDPG-AIGAPGKTGP-----VGPAGPAGKPG-PDGLRGLPGSVG 1375
Query: 140 ETGPPPGTVQEGPGPDVAQPEL 161
+ G P T Q GP V P L
Sbjct: 1376 QQGRPGATGQAGPPGPVGPPGL 1397
Score = 36.2 bits (82), Expect = 0.023
Identities = 50/182 (27%), Positives = 60/182 (32%), Gaps = 24/182 (13%)
Query: 16 NQASGGPPPEPGCC--VADPEGSVEADGPAQPAQP-----AKPIAYVKPFRRQPPARPES 68
N+ GPP PG V P G+ ADG P AK + F P
Sbjct: 1100 NKGEHGPPGPPGPIGPVGQP-GAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQ 1158
Query: 69 PPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHI----------QLDH 118
P G + G GPRG AG GA+G P + +
Sbjct: 1159 GLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPN-GADGPQGPPGGVGNLGPPGEKGEPGE 1217
Query: 119 HGEPGHQGEPEITETAAFSLSETGPPPGTVQEG-PGPDVAQPELGFQEPPAAPGPQAVDW 177
G PG QGEP + E G + Q G PGP + G P PGP
Sbjct: 1218 SGSPGIQGEPGVKGPR----GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPG 1273
Query: 178 QP 179
P
Sbjct: 1274 DP 1275
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 46.6 bits (109), Expect = 2e-05
Identities = 47/155 (30%), Positives = 54/155 (34%), Gaps = 33/155 (21%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGG 80
GP E G V P G V A GPA P P P +R + PP G
Sbjct: 745 GPKGENG--VVGPTGPVGAAGPAGPNGPPGPAG----------SRGDGGPPGMTGFPGAA 792
Query: 81 SRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSE 140
R G +GP G G G EGL P G G GE +
Sbjct: 793 GRTGPPGPSGISGPPGPPGP-AGKEGLRGP-----RGDQGPVGRTGE----------VGA 836
Query: 141 TGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAV 175
GPP ++GP E G PP PGPQ +
Sbjct: 837 VGPPGFAGEKGP-----SGEAGTAGPPGTPGPQGL 866
Score = 41.2 bits (95), Expect = 7e-04
Identities = 57/194 (29%), Positives = 65/194 (33%), Gaps = 30/194 (15%)
Query: 4 PRPSKRLRSMAPNQASG--GPPPEPG----------------CCVADPEGSVEADGPAQP 45
P PS PN +G GPP PG V P GS A GPA
Sbjct: 372 PGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGV 431
Query: 46 AQPAKPIAYV-KPFRRQPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQR--Q 102
P +P P P SP + G PG R GP G AG R
Sbjct: 432 RGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDG--RPGPIGPAGARGEP 489
Query: 103 GAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGP-GPDVAQPEL 161
G G P G+PG G+ A + GP +GP GP Q
Sbjct: 490 GNIGFPGPK-----GPTGDPGKNGDKGHAGLAG-ARGAPGPDGNNGAQGPPGPQGVQGGK 543
Query: 162 GFQEPPAAPGPQAV 175
G Q PP PG Q +
Sbjct: 544 GEQGPPGPPGFQGL 557
Score = 41.2 bits (95), Expect = 7e-04
Identities = 53/183 (28%), Positives = 64/183 (34%), Gaps = 31/183 (16%)
Query: 14 APNQASGGPPPEPGCCVA----DPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESP 69
A ++ GGPP G A P G GP P PA P Q P
Sbjct: 774 AGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGE 833
Query: 70 PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQ--GAEGLMAPDVHIQLDHHGEPGHQGE 127
A G + P G AGP G G + GA G++ G PG +GE
Sbjct: 834 VGAVGPPGFAGEKGPS-GEAGTAGPPGTPGPQGLLGAPGIL-----------GLPGSRGE 881
Query: 128 PEITETAAFSLSETGP-----------PPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVD 176
+ A ++ E GP PPG V PG + A E G P GP D
Sbjct: 882 RGLPGVAG-AVGEPGPLGIAGPPGARGPPGAVGS-PGVNGAPGEAGRDGNPGNDGPPGRD 939
Query: 177 WQP 179
QP
Sbjct: 940 GQP 942
Score = 40.8 bits (94), Expect = 0.001
Identities = 53/178 (29%), Positives = 63/178 (35%), Gaps = 41/178 (23%)
Query: 12 SMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPP 71
++ P A+G P P A G+ GP+ P PA + P P P
Sbjct: 953 NIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVG---------PRGPSGPQG 1003
Query: 72 AERGRRRGGSRRPGRGRGRRAGPRGDAGQR--QGAEGLMAPDVHIQLDHHGEPGHQGE-- 127
RG PG GPRG G + G +GL P + HHG+ G G
Sbjct: 1004 I-----RGDKGEPG-----EKGPRGLPGLKGHNGLQGL--PGI---AGHHGDQGAPGSVG 1048
Query: 128 ------PEITETAAFSLSETGPPPGTVQEGP----GPDVAQPELGFQEPPAAPGPQAV 175
P A TG PGTV GP GP Q G PP PGP V
Sbjct: 1049 PAGPRGPAGPSGPAGKDGRTG-HPGTV--GPAGIRGPQGHQGPAGPPGPPGPPGPPGV 1103
Score = 36.6 bits (83), Expect = 0.017
Identities = 47/157 (29%), Positives = 54/157 (34%), Gaps = 40/157 (25%)
Query: 19 SGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRR 78
S GPP PG P+G + A G A PA PA P V P P P
Sbjct: 251 SAGPPGFPGA--PGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNP-------- 300
Query: 79 GGSRRPGRGRGRRAGPRGDAGQR--QGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAF 136
G G +G AG GA GL P G PG G T
Sbjct: 301 --------GANGLTGAKGAAGLPGVAGAPGLPGP--------RGIPGPVGAAGATGAR-- 342
Query: 137 SLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQ 173
G V E PGP ++ E G + P + GPQ
Sbjct: 343 ---------GLVGE-PGPAGSKGESGNKGEPGSAGPQ 369
Score = 34.7 bits (78), Expect = 0.066
Identities = 57/193 (29%), Positives = 68/193 (35%), Gaps = 37/193 (19%)
Query: 19 SGGP--PPEPGCCVADPEGSVEADGPAQPAQP--------AKPIAYVKPFRRQPPARPES 68
S GP PP P +P G V A G A P+ P A I K + +P R E
Sbjct: 608 SRGPSGPPGPDGNKGEP-GVVGAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEI 666
Query: 69 PPPAERGRRR--GGSRRPG-------RGRGRRAGPRGDAGQR-----QGAEGLMAPDVHI 114
P G R G PG RG AGP G AG R +G G P+
Sbjct: 667 GNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFA 726
Query: 115 -QLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGP-GPDVAQPELGFQEPPAAPGP 172
G+PG +GE GP GP GP A G PP G
Sbjct: 727 GPAGAAGQPGAKGE----------RGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGS 776
Query: 173 QAVDWQPVLTLYP 185
+ P +T +P
Sbjct: 777 RGDGGPPGMTGFP 789
Score = 33.1 bits (74), Expect = 0.19
Identities = 47/176 (26%), Positives = 56/176 (31%), Gaps = 14/176 (7%)
Query: 4 PRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPP 63
P P + P A+G P P+ A G GPA PA P P +
Sbjct: 90 PGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGPAGP-----PGKAGED 144
Query: 64 ARPESP-PPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMA-PDVHIQLDHHGE 121
P P P ERG R G G +G G G +GL P G
Sbjct: 145 GHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRG-HNGLDGLKGQPGAPGVKGEPGA 203
Query: 122 PGHQGEPEITETAAF-----SLSETGPPPGTVQEGP-GPDVAQPELGFQEPPAAPG 171
PG G P T + GP +G GP +G PP PG
Sbjct: 204 PGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPG 259
Score = 28.9 bits (63), Expect = 3.6
Identities = 46/157 (29%), Positives = 52/157 (33%), Gaps = 22/157 (14%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARP--ESPPPAERGRRR 78
GPP PG +G GPA F PA P E PP E G
Sbjct: 547 GPPGPPGF-----QGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESGAAG 601
Query: 79 GGSRRPGRGRGRRAGPRGDAGQR--QGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAF 136
RG GP G+ G+ GA G P G PG +G I
Sbjct: 602 PTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPS-----GPSGLPGERGAAGIPG---- 652
Query: 137 SLSETGPPPGTVQEG-PGPDVAQPELGFQEPPAAPGP 172
E G P + G PG D A+ G APGP
Sbjct: 653 GKGEKGEPGLRGEIGNPGRDGAR---GAPGAVGAPGP 686
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 46.6 bits (109), Expect = 2e-05
Identities = 49/191 (25%), Positives = 62/191 (32%), Gaps = 49/191 (25%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
M + P +R R +P + S G P PG P R
Sbjct: 414 MAQALPRQRQRDASPGRGSHGQTPSPGAL---------------------------PLGR 446
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGL--MAPDVHIQLDH 118
Q +P PP +R +GG +PG G R+ P QG + L + P
Sbjct: 447 QTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPA------ 500
Query: 119 HGEPGHQGEPEITETAAFSLSETGPP-------PGTVQEGPGPDVAQPELGFQEPPAAPG 171
G P Q P T S+ PP V GPG A PPA+P
Sbjct: 501 -GSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPA------ARPPASPS 553
Query: 172 PQAVDWQPVLT 182
PQ P T
Sbjct: 554 PQRQAGPPQAT 564
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 46.6 bits (109), Expect = 2e-05
Identities = 49/191 (25%), Positives = 62/191 (32%), Gaps = 49/191 (25%)
Query: 1 MEEPRPSKRLRSMAPNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR 60
M + P +R R +P + S G P PG P R
Sbjct: 414 MAQALPRQRQRDASPGRGSHGQTPSPGAL---------------------------PLGR 446
Query: 61 QPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGL--MAPDVHIQLDH 118
Q +P PP +R +GG +PG G R+ P QG + L + P
Sbjct: 447 QTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQHLSGLGPPA------ 500
Query: 119 HGEPGHQGEPEITETAAFSLSETGPP-------PGTVQEGPGPDVAQPELGFQEPPAAPG 171
G P Q P T S+ PP V GPG A PPA+P
Sbjct: 501 -GSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPA------ARPPASPS 553
Query: 172 PQAVDWQPVLT 182
PQ P T
Sbjct: 554 PQRQAGPPQAT 564
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 46.6 bits (109), Expect = 2e-05
Identities = 38/105 (36%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 5 RPSKRLRSMAPNQASGGPPPEPGC--CVADPEGSVEADGPA----QPAQPAKPIAYVKPF 58
+P R + AP A PPP P VA P G A PA +P P P P
Sbjct: 166 QPGPRAQRAAPLAA---PPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQ 222
Query: 59 RRQPPARPESPPPAERGRRRGGSRRPGRGRG--RRAGPRGDAGQR 101
++QPP PPP R GG+ RP R R G G AG R
Sbjct: 223 QQQPPPPQPQPPPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGR 267
Score = 31.2 bits (69), Expect = 0.73
Identities = 38/158 (24%), Positives = 45/158 (28%), Gaps = 38/158 (24%)
Query: 15 PNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAER 74
P + PP P P + A P PA P P P +P A R
Sbjct: 101 PPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPA----------PVAAAAPARAPR 150
Query: 75 GRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEPEITETA 134
+ P G + GPR Q A L AP P P +
Sbjct: 151 AAAAAATAPPSPGPAQ-PGPRA-----QRAAPLAAPP----------PAPAAPPAVA--- 191
Query: 135 AFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGP 172
PP + P P VA E PP P P
Sbjct: 192 ---------PPAGPRRAPPPAVAAREPPLPPPPQPPAP 220
Score = 30.8 bits (68), Expect = 0.96
Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 26/99 (26%)
Query: 4 PRPSKRLRSMAPNQASGGPPPEPG-------CCVADPEGSVEA----------DGPAQP- 45
P P + R A+ PPP P A P + A GPAQP
Sbjct: 109 PAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPG 168
Query: 46 --AQPAKPIAYVKPFRRQPPA------RPESPPPAERGR 76
AQ A P+A P PPA +PPPA R
Sbjct: 169 PRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAR 207
Score = 29.6 bits (65), Expect = 2.1
Identities = 34/124 (27%), Positives = 38/124 (30%), Gaps = 24/124 (19%)
Query: 52 IAYVKPFRRQPPARPESPPPAERGRRRGGSRRPGRGRGRRAGPRGDAGQRQGAEGLMAPD 111
I+Y R QPP R +PP R PRG A AP
Sbjct: 91 ISYRNAARVQPPRRGATPPAPPRA------------------PRG----APAAAAAAAPP 128
Query: 112 VHIQLDHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPG 171
P P AA + + P PG Q GP A P PPA
Sbjct: 129 PTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAA--PPPAPAA 186
Query: 172 PQAV 175
P AV
Sbjct: 187 PPAV 190
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 46.2 bits (108), Expect = 2e-05
Identities = 56/187 (29%), Positives = 67/187 (35%), Gaps = 41/187 (21%)
Query: 5 RPSKRLRSMA-PNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPP 63
RP + R A P +A+ GPP P G VEA + +QP
Sbjct: 70 RPPRENRKRAVPARAARGPPKRPA---GGQTGGVEAASGEERSQPR-------------- 112
Query: 64 ARPESPPPAERGRRRGGSRRPG---------RGRGRRAGPRGDAGQRQGAEGLMA----- 109
RP PPPA R R RR R +G R+G RGD G + G A
Sbjct: 113 -RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGT 171
Query: 110 PDVHIQL------DHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGP-DVAQPELG 162
D L G G + EP E SL + PP T P D A P G
Sbjct: 172 GDSSAGLTTFPGSSRGGFSGREEEPR-RERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAG 230
Query: 163 FQEPPAA 169
+ PP A
Sbjct: 231 PEAPPPA 237
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 46.2 bits (108), Expect = 2e-05
Identities = 56/187 (29%), Positives = 67/187 (35%), Gaps = 41/187 (21%)
Query: 5 RPSKRLRSMA-PNQASGGPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPP 63
RP + R A P +A+ GPP P G VEA + +QP
Sbjct: 70 RPPRENRKRAVPARAARGPPKRPA---GGQTGGVEAASGEERSQPR-------------- 112
Query: 64 ARPESPPPAERGRRRGGSRRPG---------RGRGRRAGPRGDAGQRQGAEGLMA----- 109
RP PPPA R R RR R +G R+G RGD G + G A
Sbjct: 113 -RPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGGRSGRRGDRGGSGWSHGHTARVGGT 171
Query: 110 PDVHIQL------DHHGEPGHQGEPEITETAAFSLSETGPPPGTVQEGPGP-DVAQPELG 162
D L G G + EP E SL + PP T P D A P G
Sbjct: 172 GDSSAGLTTFPGSSRGGFSGREEEPR-RERRQPSLQRSTPPAPTYSPRSDPRDPAAPRAG 230
Query: 163 FQEPPAA 169
+ PP A
Sbjct: 231 PEAPPPA 237
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 46.2 bits (108), Expect = 2e-05
Identities = 52/174 (29%), Positives = 61/174 (35%), Gaps = 29/174 (16%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGG 80
G P PG P+GS+ GP P QP E PP RG R
Sbjct: 794 GYPGRPG-----PKGSIGFPGPLGPIGEKGKSGKTG----QPGLEGERGPPGSRGERG-- 842
Query: 81 SRRPGRGRGRRAGPRGDAGQ--------RQGAEGLMAPDVHI----QLDHHGEPGHQGEP 128
+PG + GP+GD GQ +G GL P H G+ G G P
Sbjct: 843 --QPGATG--QPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHP 898
Query: 129 EITETAAFSLSETGPP-PGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQPVL 181
F +TGPP P V G LG + PP PGP P L
Sbjct: 899 GQRGELGFQ-GQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGL 951
Score = 40.0 bits (92), Expect = 0.002
Identities = 52/165 (31%), Positives = 61/165 (36%), Gaps = 28/165 (16%)
Query: 19 SGGPPPEPGCCVADPEGSVEADG-PAQPAQPAKPIAYVKPFRRQ------PPARPESPPP 71
S GP PG P+G ++G P P +P A + R PP P P P
Sbjct: 1167 SMGPHGAPG--PRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGDPGPPGAPGIPGP 1224
Query: 72 AERGRRRGGSRRPGRGRGRRAGPRGDAGQ--RQGAEGLMAPDVHIQLDHHGEPGHQGEPE 129
+G S G AGP G G GA+G + P G PG G P
Sbjct: 1225 KGDIGEKGDS-----GPSGAAGPPGKKGPPGEDGAKGSVGPT--------GLPGDLGPPG 1271
Query: 130 ITETAAF--SLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGP 172
+ S E G P G V GPGP A E G PP GP
Sbjct: 1272 DPGVSGIDGSPGEKGDP-GDVG-GPGPPGASGEPGAPGPPGKRGP 1314
Score = 39.7 bits (91), Expect = 0.002
Identities = 50/159 (31%), Positives = 60/159 (37%), Gaps = 20/159 (12%)
Query: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESPPPAERGRRRGG 80
G P PG +G A+GP P A +P R SP P R G
Sbjct: 572 GQPGPPG-----EDGERGAEGPPGPTGQAG-----EPGPRGLLGPRGSPGPTGRPGVTGI 621
Query: 81 SRRPG-RGRGRRAGPRGDAGQR--QGAEGLMAPDVHIQLDHHGEPGHQGEPEITETAAFS 137
PG +G G G GQ+ G++GL P I G PG +G P
Sbjct: 622 DGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLI-----GTPGEKGPPGNPGIPGLP 676
Query: 138 LSETGPPPGTVQEGP-GPDVAQPELGFQEPPAAPGPQAV 175
S+ GP EGP G AQ G PP PGP+ V
Sbjct: 677 GSD-GPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGV 714
Score = 38.1 bits (87), Expect = 0.006
Identities = 41/123 (33%), Positives = 49/123 (39%), Gaps = 25/123 (20%)
Query: 66 PESPPPAERGRRRGGSRRPG----RGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGE 121
P PP R G RPG RG GP+GD +G +GL P + + G+
Sbjct: 519 PHGPPG-----RVGKMGRPGADGARGLPGDTGPKGD----RGFDGL--PGLPGEKGQRGD 567
Query: 122 PGHQGEP----EITETAAFSLSETGPPPGTVQEG-PGPDVAQPELGFQEPPAAPGPQAVD 176
GH G+P E E A GPP T Q G PGP G P PG +D
Sbjct: 568 FGHVGQPGPPGEDGERGA-----EGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGID 622
Query: 177 WQP 179
P
Sbjct: 623 GAP 625
Score = 38.1 bits (87), Expect = 0.006
Identities = 59/205 (28%), Positives = 68/205 (33%), Gaps = 47/205 (22%)
Query: 12 SMAPNQASG--GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRRQPPARPESP 69
S+ P G GPP +PG D + D P P P A +P PP +
Sbjct: 1257 SVGPTGLPGDLGPPGDPGVSGIDGSPGEKGD-PGDVGGPGPPGASGEPGAPGPPGK--RG 1313
Query: 70 PPAERGRR-----RGGSRRPGR-GRGRRAGPRGDAGQ--RQGAEGLMA-PDVHIQLDHHG 120
P GR +G PG G R GP G G R G EGL P + G
Sbjct: 1314 PSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLG 1373
Query: 121 EPGHQGEPEITETAAFS--LSETGP--------------PPGT-----------VQEGPG 153
PG G P + +TGP PPG VQ PG
Sbjct: 1374 APGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPG 1433
Query: 154 P--DVAQP----ELGFQEPPAAPGP 172
P D P LG PP GP
Sbjct: 1434 PKGDPGPPGPIGSLGHPGPPGVAGP 1458
Score = 35.0 bits (79), Expect = 0.051
Identities = 36/113 (31%), Positives = 41/113 (36%), Gaps = 30/113 (26%)
Query: 70 PPAERGRRRGGSRRPG-RGRGRRAGPRGDAGQRQGAEGLMAPDVHIQLDHHGEPGHQGEP 128
PP E G R G PG G+ GPRG G R G PG G P
Sbjct: 576 PPGEDGER-GAEGPPGPTGQAGEPGPRGLLGPR------------------GSPGPTGRP 616
Query: 129 EIT--ETAAFSLSETGPPPGTVQEGPGPDVAQPELGFQEPPAAPGPQAVDWQP 179
+T + A + GPP PGP Q G Q PGPQ + P
Sbjct: 617 GVTGIDGAPGAKGNVGPP-----GEPGPPGQQGNHGSQ---GLPGPQGLIGTP 661
Score = 31.6 bits (70), Expect = 0.56
Identities = 39/169 (23%), Positives = 60/169 (35%), Gaps = 56/169 (33%)
Query: 62 PPARPESPPPAERGRRRGGSRRPGR-GRGRR-------AGPRGDAGQRQGA--------- 104
P PE+P P +G+ +G + GR G+GR+ + P D+ + Q +
Sbjct: 235 PQGEPETPRPRRKGKGKGRKKGRGRKGKGRKKNKEIWTSSPPPDSAENQTSTDIPKTETP 294
Query: 105 --------------------------EGLMAPDVHIQL----------DHHGEPGHQGEP 128
E + PD +L D G+ G P
Sbjct: 295 APNLPPTPTPLVVTSTVTTGLNATILERSLDPDSGTELGTLETKAAREDEEGDDSTMG-P 353
Query: 129 EITETAAFSLSETGPPPGTVQEGPGPDVAQPELG--FQEPPAAPGPQAV 175
+ S ++ PG ++G + A E G F+ PP APGPQ V
Sbjct: 354 DFRAAEYPSRTQFQIFPGAGEKGAKGEPAVIEKGQQFEGPPGAPGPQGV 402
Score = 30.8 bits (68), Expect = 0.96
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 120 GEPGHQGEPEITETAAFSLSETGPPPGTVQEG-PGPDVAQPELGFQEPPAAPGPQAVDWQ 178
GE G +GEP + E GPP +G GP GF P PGP +
Sbjct: 373 GEKGAKGEPAVIEKGQ---QFEGPPGAPGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGI 429
Query: 179 PVLTLYPCIGFRALGDSAVLQVIQTPQGTYVQGVPV 214
P + G R + ++ Q G++ +G PV
Sbjct: 430 PGID-----GIRGPPGTVIMMPFQFAGGSF-KGPPV 459
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,058,756
Number of Sequences: 37866
Number of extensions: 1013233
Number of successful extensions: 9741
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 1068
Number of HSP's that attempted gapping in prelim test: 6323
Number of HSP's gapped (non-prelim): 3615
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.