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Search of human proteins with 189027090
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|189027090 cytoplasmic polyadenylation element binding
protein 4 [Homo sapiens]
(729 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|189027090 cytoplasmic polyadenylation element binding protein... 1528 0.0
gi|50345881 cytoplasmic polyadenylation element binding protein ... 738 0.0
gi|33188441 cytoplasmic polyadenylation element binding protein ... 711 0.0
gi|33188439 cytoplasmic polyadenylation element binding protein ... 695 0.0
gi|119395725 cytoplasmic polyadenylation element binding protein... 214 2e-55
gi|119395722 cytoplasmic polyadenylation element binding protein... 214 2e-55
gi|119395720 cytoplasmic polyadenylation element binding protein... 214 2e-55
gi|119395718 cytoplasmic polyadenylation element binding protein... 208 2e-53
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 50 6e-06
gi|61966923 forkhead box B2 [Homo sapiens] 49 2e-05
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 47 5e-05
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 47 5e-05
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 45 2e-04
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo... 45 3e-04
gi|32307177 forkhead box G1 [Homo sapiens] 45 3e-04
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ... 44 7e-04
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ... 44 7e-04
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 41 0.003
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 41 0.003
gi|59938776 cAMP responsive element binding protein 5 isoform de... 41 0.005
gi|59938774 cAMP responsive element binding protein 5 isoform be... 41 0.005
gi|59938772 cAMP responsive element binding protein 5 isoform ga... 41 0.005
gi|59938770 cAMP responsive element binding protein 5 isoform al... 41 0.005
gi|157388908 hypothetical protein LOC54954 [Homo sapiens] 41 0.005
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 40 0.006
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 40 0.008
gi|171543895 ataxin 2 [Homo sapiens] 40 0.010
gi|55750053 atrophin-1 [Homo sapiens] 40 0.010
gi|55750041 atrophin-1 [Homo sapiens] 40 0.010
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 40 0.010
>gi|189027090 cytoplasmic polyadenylation element binding protein 4
[Homo sapiens]
Length = 729
Score = 1528 bits (3955), Expect = 0.0
Identities = 729/729 (100%), Positives = 729/729 (100%)
Query: 1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW 60
MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW
Sbjct: 1 MGDYGFGVLVQSNTGNKSAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAW 60
Query: 61 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG 120
LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG
Sbjct: 61 LFPAPATHNIQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQG 120
Query: 121 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS 180
DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS
Sbjct: 121 DNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSS 180
Query: 181 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ 240
TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ
Sbjct: 181 TIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ 240
Query: 241 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS 300
HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS
Sbjct: 241 HHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWS 300
Query: 301 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW 360
PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW
Sbjct: 301 PGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSW 360
Query: 361 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKGRLNYSYPGSDSSLLINA 420
MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKGRLNYSYPGSDSSLLINA
Sbjct: 361 MEDSLNRADNIFPFPDRPRTFDMHSLESSLIDIMRAENDTIKGRLNYSYPGSDSSLLINA 420
Query: 421 RTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP 480
RTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP
Sbjct: 421 RTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFSHQNGERVERYSRKVFVGGLP 480
Query: 481 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG 540
PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG
Sbjct: 481 PDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDG 540
Query: 541 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM 600
KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM
Sbjct: 541 KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIM 600
Query: 601 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY 660
DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY
Sbjct: 601 DRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPY 660
Query: 661 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR 720
VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR
Sbjct: 661 VLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDR 720
Query: 721 PRHISFRWN 729
PRHISFRWN
Sbjct: 721 PRHISFRWN 729
>gi|50345881 cytoplasmic polyadenylation element binding protein 3
[Homo sapiens]
Length = 698
Score = 738 bits (1906), Expect = 0.0
Identities = 418/726 (57%), Positives = 489/726 (67%), Gaps = 94/726 (12%)
Query: 70 IQDEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPET----EKAKSEENQGDNSSE 125
+QD++L +K+K+Q Q QQ ++QQ P P P T E K EEN +
Sbjct: 1 MQDDLL-MDKSKTQPQPQQQ--QRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALS 57
Query: 126 NG------NGKEKIRIESPVLTGFDYQEATGLGTSTQ-PLTSSASSLTGF-SNWSAAIAP 177
NG +K+++ESP+L G + + Q P AS F S WS
Sbjct: 58 PAAAPPAPNGPDKMQMESPLLPGLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWS----- 112
Query: 178 SSSTIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIG-PLSQHHPHH 236
+ +T ED+ F QG P NG +LFQNFPHHV+P FGG+FSPQIG +QHH
Sbjct: 113 TGTTNAVEDS--FFQGITPV----NGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQP 166
Query: 237 PH----------FQHHHSQHQQQRRSPASPHPPPFTHRNAA--FNQLPHLANN------- 277
P Q +Q QQRRSPASP P+ R+AA + P + +
Sbjct: 167 PPPAPAPQPAQPAQPPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSSSAV 226
Query: 278 --------LNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQ-GRDHRRGLNGGI--- 325
+ S W+++QS + S+ +P WGG Q GRD RR + G+
Sbjct: 227 AAAAAAAAASSASSSWNTHQSVNAAWSAPSNP-------WGGLQAGRDPRRAVGVGVGVG 279
Query: 326 ----TPLNSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADN---IFPFPDRP 378
+PLN ISPLKK F+SN I K+ R ++ KSWMED+ R DN + PF DR
Sbjct: 280 VGVPSPLNPISPLKKPFSSNVIAPPKFPR-AAPLTSKSWMEDNAFRTDNGNNLLPFQDRS 338
Query: 379 R---TFDMHSLESSLIDIMRAENDTIKGRLNYSYPGSD-----SSLLINARTYGR----- 425
R TF++HSLE+SL+D++R +++ +KG+ YP S + ++ GR
Sbjct: 339 RPYDTFNLHSLENSLMDMIRTDHEPLKGK---HYPPSGPPMSFADIMWRNHFAGRMGINF 395
Query: 426 -RRGQSSLFPMEDGFLDDGRGDQPLHSGLGSP-HCFSHQNGERVERYSRKVFVGGLPPDI 483
G ++ + + FLDD GDQ L SGL SP C QNGERVERYSRKVFVGGLPPDI
Sbjct: 396 HHPGTDNIMALNNAFLDDSHGDQALSSGLSSPTRC---QNGERVERYSRKVFVGGLPPDI 452
Query: 484 DEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLY 543
DEDEITASFRRFGPL+VDWPHKAESKSYFPPKGYAFLLFQ+ESSVQALIDAC+EEDGKLY
Sbjct: 453 DEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 512
Query: 544 LCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRL 603
LCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRL
Sbjct: 513 LCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRL 572
Query: 604 YGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLD 663
YGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQH +IDKRVEVKPYVLD
Sbjct: 573 YGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHNDIDKRVEVKPYVLD 632
Query: 664 DQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRH 723
DQ+CDECQG RCGGKFAPFFCANVTCLQYYCEYCWA+IHSRAGREFHKPLVKEGGDRPRH
Sbjct: 633 DQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGREFHKPLVKEGGDRPRH 692
Query: 724 ISFRWN 729
+ FRW+
Sbjct: 693 VPFRWS 698
>gi|33188441 cytoplasmic polyadenylation element binding protein 2
isoform A [Homo sapiens]
Length = 559
Score = 711 bits (1835), Expect = 0.0
Identities = 370/529 (69%), Positives = 407/529 (76%), Gaps = 35/529 (6%)
Query: 217 GFGGSFS----PQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLP 272
GFGG FS P P + + P Q Q RRSP SP AA
Sbjct: 50 GFGGPFSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQ 109
Query: 273 HLANNLNKP---PSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGIT-PL 328
+ N ++P SPWS++QS S W G G WG GRDHRR N GI +
Sbjct: 110 RNSYNHHQPLLKQSPWSNHQS------SGW---GTGSMSWGAMHGRDHRRTGNMGIPGTM 160
Query: 329 NSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADN----IFPFPDRPRTFD-- 382
N ISPLKK F+ N I K+ R + + PKSW+ED++ R DN + P DR R +D
Sbjct: 161 NQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQDRSRMYDSL 220
Query: 383 -MHSLESSLIDIMRAENDTIKGRLNYSYPGSDSSLLINARTYGRRRGQSSLFPMEDGFLD 441
MHSLE+SLIDIMRAE+D +KGRL+Y +PG+D+ L++N G+SSLFP++DG LD
Sbjct: 221 NMHSLENSLIDIMRAEHDPLKGRLSYPHPGTDNLLMLN--------GRSSLFPIDDGLLD 272
Query: 442 DGRGDQPLHSGLGSPHCFS-HQNGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIV 500
DG DQ L SP C+S HQNGER+ER+SRKVFVGGLPPDIDEDEITASFRRFGPL+V
Sbjct: 273 DGHSDQV--GVLNSPTCYSAHQNGERIERFSRKVFVGGLPPDIDEDEITASFRRFGPLVV 330
Query: 501 DWPHKAESKSYFPPKGYAFLLFQDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRP 560
DWPHKAESKSYFPPKGYAFLLFQ+ESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRP
Sbjct: 331 DWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRP 390
Query: 561 WNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKY 620
WNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKY
Sbjct: 391 WNLSDSDFVMDGSQPLDPRKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKY 450
Query: 621 PKGAGRVAFSNQQSYIAAISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFA 680
PKGAGRVAFSNQQSYIAAISARFVQLQHG+IDKRVEVKPYVLDDQ+CDECQGARCGGKFA
Sbjct: 451 PKGAGRVAFSNQQSYIAAISARFVQLQHGDIDKRVEVKPYVLDDQMCDECQGARCGGKFA 510
Query: 681 PFFCANVTCLQYYCEYCWAAIHSRAGREFHKPLVKEGGDRPRHISFRWN 729
PFFCANVTCLQYYCE+CWA IHSRAGREFHKPLVKEG DRPR I FRWN
Sbjct: 511 PFFCANVTCLQYYCEFCWANIHSRAGREFHKPLVKEGADRPRQIHFRWN 559
>gi|33188439 cytoplasmic polyadenylation element binding protein 2
isoform B [Homo sapiens]
Length = 589
Score = 695 bits (1794), Expect = 0.0
Identities = 370/559 (66%), Positives = 407/559 (72%), Gaps = 65/559 (11%)
Query: 217 GFGGSFS----PQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLP 272
GFGG FS P P + + P Q Q RRSP SP AA
Sbjct: 50 GFGGPFSATAVPPPPPPAMNIPQQQPPPPAAPQQPQSRRSPVSPQLQQQHQAAAAAFLQQ 109
Query: 273 HLANNLNKP---PSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGIT-PL 328
+ N ++P SPWS++QS S W G G WG GRDHRR N GI +
Sbjct: 110 RNSYNHHQPLLKQSPWSNHQS------SGW---GTGSMSWGAMHGRDHRRTGNMGIPGTM 160
Query: 329 NSISPLKKNFASNHIQLQKYARPSSAFAPKSWMEDSLNRADN----IFPFP--------- 375
N ISPLKK F+ N I K+ R + + PKSW+ED++ R DN + P
Sbjct: 161 NQISPLKKPFSGNVIAPPKFTRSTPSLTPKSWIEDNVFRTDNNSNTLLPLQVRSSLQLPA 220
Query: 376 ---------------------DRPRTFD---MHSLESSLIDIMRAENDTIKGRLNYSYPG 411
DR R +D MHSLE+SLIDIMRAE+D +KGRL+Y +PG
Sbjct: 221 WGSDSLQDSWCTAAGTSRIDQDRSRMYDSLNMHSLENSLIDIMRAEHDPLKGRLSYPHPG 280
Query: 412 SDSSLLINARTYGRRRGQSSLFPMEDGFLDDGRGDQPLHSGLGSPHCFS-HQNGERVERY 470
+D+ L++N G+SSLFP++DG LDDG DQ L SP C+S HQNGER+ER+
Sbjct: 281 TDNLLMLN--------GRSSLFPIDDGLLDDGHSDQV--GVLNSPTCYSAHQNGERIERF 330
Query: 471 SRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQA 530
SRKVFVGGLPPDIDEDEITASFRRFGPL+VDWPHKAESKSYFPPKGYAFLLFQ+ESSVQA
Sbjct: 331 SRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQA 390
Query: 531 LIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRP 590
LIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRP
Sbjct: 391 LIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPRP 450
Query: 591 LRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGE 650
LRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG+
Sbjct: 451 LRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGD 510
Query: 651 IDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGREFH 710
IDKRVEVKPYVLDDQ+CDECQGARCGGKFAPFFCANVTCLQYYCE+CWA IHSRAGREFH
Sbjct: 511 IDKRVEVKPYVLDDQMCDECQGARCGGKFAPFFCANVTCLQYYCEFCWANIHSRAGREFH 570
Query: 711 KPLVKEGGDRPRHISFRWN 729
KPLVKEG DRPR I FRWN
Sbjct: 571 KPLVKEGADRPRQIHFRWN 589
>gi|119395725 cytoplasmic polyadenylation element binding protein 1
isoform 1 [Homo sapiens]
Length = 561
Score = 214 bits (545), Expect = 2e-55
Identities = 115/257 (44%), Positives = 160/257 (62%), Gaps = 13/257 (5%)
Query: 470 YSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQ 529
YS KVF+GG+P DI E + +FR FG L V+WP K PPKGY +L+F+ E SV+
Sbjct: 309 YSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVR 368
Query: 530 ALIDAC----IEEDG--KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIF 583
+L+ AC + DG + Y +SS ++ K VQ+ PW L+DS+FV SQ LDP +T+F
Sbjct: 369 SLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVF 428
Query: 584 VGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARF 643
VG + L A LA I++ L+GGV YAGIDTD KYP G+GRV F+NQ+SY+ A+SA F
Sbjct: 429 VGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKAVSAAF 487
Query: 644 VQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHS 703
V+++ + K+V++ PY L+D LC C + PFFC + C +Y+C CW HS
Sbjct: 488 VEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQPGPFFCRDQVCFKYFCRSCWHWRHS 541
Query: 704 RAGREFHKPLVKEGGDR 720
G H PL++ +R
Sbjct: 542 MEGLRHHSPLMRNQKNR 558
>gi|119395722 cytoplasmic polyadenylation element binding protein 1
isoform 3 [Homo sapiens]
Length = 486
Score = 214 bits (545), Expect = 2e-55
Identities = 115/257 (44%), Positives = 160/257 (62%), Gaps = 13/257 (5%)
Query: 470 YSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQ 529
YS KVF+GG+P DI E + +FR FG L V+WP K PPKGY +L+F+ E SV+
Sbjct: 234 YSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVR 293
Query: 530 ALIDAC----IEEDG--KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIF 583
+L+ AC + DG + Y +SS ++ K VQ+ PW L+DS+FV SQ LDP +T+F
Sbjct: 294 SLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVF 353
Query: 584 VGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARF 643
VG + L A LA I++ L+GGV YAGIDTD KYP G+GRV F+NQ+SY+ A+SA F
Sbjct: 354 VGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKAVSAAF 412
Query: 644 VQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHS 703
V+++ + K+V++ PY L+D LC C + PFFC + C +Y+C CW HS
Sbjct: 413 VEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQPGPFFCRDQVCFKYFCRSCWHWRHS 466
Query: 704 RAGREFHKPLVKEGGDR 720
G H PL++ +R
Sbjct: 467 MEGLRHHSPLMRNQKNR 483
>gi|119395720 cytoplasmic polyadenylation element binding protein 1
isoform 3 [Homo sapiens]
Length = 486
Score = 214 bits (545), Expect = 2e-55
Identities = 115/257 (44%), Positives = 160/257 (62%), Gaps = 13/257 (5%)
Query: 470 YSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSVQ 529
YS KVF+GG+P DI E + +FR FG L V+WP K PPKGY +L+F+ E SV+
Sbjct: 234 YSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGYVYLVFELEKSVR 293
Query: 530 ALIDAC----IEEDG--KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIF 583
+L+ AC + DG + Y +SS ++ K VQ+ PW L+DS+FV SQ LDP +T+F
Sbjct: 294 SLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDPSRTVF 353
Query: 584 VGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARF 643
VG + L A LA I++ L+GGV YAGIDTD KYP G+GRV F+NQ+SY+ A+SA F
Sbjct: 354 VGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKAVSAAF 412
Query: 644 VQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHS 703
V+++ + K+V++ PY L+D LC C + PFFC + C +Y+C CW HS
Sbjct: 413 VEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQPGPFFCRDQVCFKYFCRSCWHWRHS 466
Query: 704 RAGREFHKPLVKEGGDR 720
G H PL++ +R
Sbjct: 467 MEGLRHHSPLMRNQKNR 483
>gi|119395718 cytoplasmic polyadenylation element binding protein 1
isoform 2 [Homo sapiens]
Length = 491
Score = 208 bits (529), Expect = 2e-53
Identities = 115/262 (43%), Positives = 160/262 (61%), Gaps = 18/262 (6%)
Query: 470 YSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKG-----YAFLLFQD 524
YS KVF+GG+P DI E + +FR FG L V+WP K PPKG Y +L+F+
Sbjct: 234 YSCKVFLGGVPWDITEAGLVNTFRVFGSLSVEWPGKDGKHPRCPPKGNMPKGYVYLVFEL 293
Query: 525 ESSVQALIDAC----IEEDG--KLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDP 578
E SV++L+ AC + DG + Y +SS ++ K VQ+ PW L+DS+FV SQ LDP
Sbjct: 294 EKSVRSLLQACSHDPLSPDGLSEYYFKMSSRRMRCKEVQVIPWVLADSNFVRSPSQRLDP 353
Query: 579 RKTIFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAA 638
+T+FVG + L A LA I++ L+GGV YAGIDTD KYP G+GRV F+NQ+SY+ A
Sbjct: 354 SRTVFVGALHGMLNAEALAAILNDLFGGVVYAGIDTDKH-KYPIGSGRVTFNNQRSYLKA 412
Query: 639 ISARFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCW 698
+SA FV+++ + K+V++ PY L+D LC C + PFFC + C +Y+C CW
Sbjct: 413 VSAAFVEIKTTKFTKKVQIDPY-LEDSLCH-----ICSSQPGPFFCRDQVCFKYFCRSCW 466
Query: 699 AAIHSRAGREFHKPLVKEGGDR 720
HS G H PL++ +R
Sbjct: 467 HWRHSMEGLRHHSPLMRNQKNR 488
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 50.4 bits (119), Expect = 6e-06
Identities = 34/90 (37%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 227 GPLSQHHPHHPHFQHHHSQHQQQRRSPA-SPHPPPFTHRNAAFNQLPHLANNLNKPPSPW 285
GPL H H PH HHH+ Q A PHPP + + P LA W
Sbjct: 991 GPLPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALGPQPSLRGW 1050
Query: 286 SSYQSPSPTPSS-SWSPGGGGYGGWGGSQG 314
PSPTP + S S G GG G SQG
Sbjct: 1051 RG-GGPSPTPGAPSPSHHGSAGGGGGSSQG 1079
Score = 33.9 bits (76), Expect = 0.55
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 252 SPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSSWSP------GGGG 305
SPASP PPP + N +P + + K PS SS +S + + + P GGGG
Sbjct: 1134 SPASPQPPPAVAAPSEKNSIP-IPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGGGG 1192
Query: 306 YGG 308
GG
Sbjct: 1193 GGG 1195
Score = 31.2 bits (69), Expect = 3.6
Identities = 22/63 (34%), Positives = 26/63 (41%)
Query: 284 PWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHI 343
P + + P PSSS +P G GG GGS G G G L S P + A
Sbjct: 506 PEDAKRQPRGRPSSSGTPREGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFMAVKSY 565
Query: 344 QLQ 346
Q Q
Sbjct: 566 QAQ 568
>gi|61966923 forkhead box B2 [Homo sapiens]
Length = 432
Score = 48.5 bits (114), Expect = 2e-05
Identities = 28/77 (36%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 227 GPLSQHHPHHPHFQHH-----HSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKP 281
G L HH HHPH HH H H P P PPP H F+Q P A
Sbjct: 134 GHLHPHHHHHPHHHHHHHAAAHHHHHHHPPQPPPPPPPPPPHMVHYFHQQPPTA----PQ 189
Query: 282 PSPWSSYQSPSPTPSSS 298
P P Q P P S
Sbjct: 190 PPPHLPSQPPQQPPQQS 206
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 47.4 bits (111), Expect = 5e-05
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Query: 473 KVFVGGLPPDIDEDEITASFRRFGPLI--VDWPHKAESKSYFPPKGYAFLLFQDESSVQA 530
K+FVGGL ++ + + F ++G ++ V K ++S +G+ F+ F+D + V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQS----RGFGFVKFKDPNCVGT 66
Query: 531 LIDACIEE-DGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPR 589
++ + DG+ +P + RP D S+ IFVGG+P
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKS----NKIFVGGIPH 122
Query: 590 PLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG 649
EL + +G V + D E + P+G G + F ++QS A++ F H
Sbjct: 123 NCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF----HD 177
Query: 650 EIDKRVEVK 658
+ K+VEVK
Sbjct: 178 IMGKKVEVK 186
Score = 44.3 bits (103), Expect = 4e-04
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 462 QNGERVERY-SRKVFVGGLPPDIDEDEITASFRRFGPLI-VDWPHKAESKSYFPPKGYAF 519
Q G R + S K+FVGG+P + E E+ F++FG + V + AE + P+G+ F
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR---PRGFGF 158
Query: 520 LLFQDESSVQALID 533
+ F+DE SV ++
Sbjct: 159 ITFEDEQSVDQAVN 172
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 47.4 bits (111), Expect = 5e-05
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 16/189 (8%)
Query: 473 KVFVGGLPPDIDEDEITASFRRFGPLI--VDWPHKAESKSYFPPKGYAFLLFQDESSVQA 530
K+FVGGL ++ + + F ++G ++ V K ++S +G+ F+ F+D + V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQS----RGFGFVKFKDPNCVGT 66
Query: 531 LIDACIEE-DGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVPR 589
++ + DG+ +P + RP D S+ IFVGG+P
Sbjct: 67 VLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKS----NKIFVGGIPH 122
Query: 590 PLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHG 649
EL + +G V + D E + P+G G + F ++QS A++ F H
Sbjct: 123 NCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHF----HD 177
Query: 650 EIDKRVEVK 658
+ K+VEVK
Sbjct: 178 IMGKKVEVK 186
Score = 44.3 bits (103), Expect = 4e-04
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 462 QNGERVERY-SRKVFVGGLPPDIDEDEITASFRRFGPLI-VDWPHKAESKSYFPPKGYAF 519
Q G R + S K+FVGG+P + E E+ F++FG + V + AE + P+G+ F
Sbjct: 102 QKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR---PRGFGF 158
Query: 520 LLFQDESSVQALID 533
+ F+DE SV ++
Sbjct: 159 ITFEDEQSVDQAVN 172
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 45.4 bits (106), Expect = 2e-04
Identities = 57/211 (27%), Positives = 79/211 (37%), Gaps = 43/211 (20%)
Query: 194 GVPAASANNGALLFQNFPHHVSP-------GFGGSFSPQIGPLSQHHPHHPHFQHH---- 242
GVPA L FQN H++ G GG GP S HH HH H H
Sbjct: 915 GVPAQQLRI-PLSFQNPLFHMAADGPGPPGGHGGGGGH--GPPSSHHHHHHHHHHRGGEP 971
Query: 243 --------HSQHQQQRRSPASPHPPPFT--HRNAAFNQLP-----------HLANNLNKP 281
H + + S P PP + H ++ ++ L +NL
Sbjct: 972 PGDTFAPFHGYSKSEDLSSGVPKPPAASILHSHSYSDEFGPSGTDFTRRQLSLQDNLQHM 1031
Query: 282 PSPWSSYQSPS-PTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFAS 340
SP P P PS GGG GG GG Q +RG + +T +S +K S
Sbjct: 1032 LSPPQITIGPQRPAPSGPGGGSGGGSGGGGGGQPPPLQRGKSQQLT----VSAAQKPRPS 1087
Query: 341 NHIQLQKYARPSSAFAPKSWMEDSLNRADNI 371
+ LQ P ++ P + SL++ +I
Sbjct: 1088 SGNLLQS---PEPSYGPARPRQQSLSKEGSI 1115
>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
sapiens]
Length = 420
Score = 44.7 bits (104), Expect = 3e-04
Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 28/219 (12%)
Query: 463 NGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLF 522
N + ++ K+F+GGL D + ++T RFG +VD K + + +G+ F+LF
Sbjct: 139 NASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGE-VVDCTIKTDPVT-GRSRGFGFVLF 196
Query: 523 QDESSVQALIDACIEE-DGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKT 581
+D +SV +++ + DGKL + +K K +P K
Sbjct: 197 KDAASVDKVLELKEHKLDGKLIDPKRAKALKGK----------------------EPPKK 234
Query: 582 IFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISA 641
+FVGG+ P + E +G + + D + +G + +++++ + +
Sbjct: 235 VFVGGL-SPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 642 RFVQLQHGEIDKRVEVKPYVLDDQLCDE--CQGARCGGK 678
R+ Q+ G+ + +V V Q + +GA GG+
Sbjct: 294 RYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGR 332
Score = 31.6 bits (70), Expect = 2.7
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 17/100 (17%)
Query: 582 IFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISA 641
+F+GG+ +L + R +G V I TDP +G G V F + S
Sbjct: 150 MFIGGLSWDTSKKDLTEYLSR-FGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS------- 201
Query: 642 RFVQLQHGEIDKRVEVKPYVLDDQLCDECQGARCGGKFAP 681
+DK +E+K + LD +L D + GK P
Sbjct: 202 ---------VDKVLELKEHKLDGKLIDPKRAKALKGKEPP 232
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 44.7 bits (104), Expect = 3e-04
Identities = 40/136 (29%), Positives = 48/136 (35%), Gaps = 29/136 (21%)
Query: 195 VPAASANNGALL---FQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQH----- 246
+P +S + +L+ QN HH S G S HHP H H HHH H
Sbjct: 13 IPKSSFSINSLVPEAVQNDNHHASHGHHNS----------HHPQHHHHHHHHHHHPPPPA 62
Query: 247 --------QQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQSPSPTPSSS 298
QQQ P P P P R A L PP P P+ +
Sbjct: 63 PQPPPPPQQQQPPPPPPPAPQPPQTRGAPAADDDKGPQQLLLPPPP---PPPPAAALDGA 119
Query: 299 WSPGGGGYGGWGGSQG 314
+ G GG G GG G
Sbjct: 120 KADGLGGKGEPGGGPG 135
>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
[Homo sapiens]
Length = 285
Score = 43.5 bits (101), Expect = 7e-04
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 25/203 (12%)
Query: 463 NGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLF 522
N + E + K+FVGGL D + ++ F +FG +VD K + + +G+ F+LF
Sbjct: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDPNT-GRSRGFGFILF 118
Query: 523 QDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTI 582
+D +SV+ ++D +++ +L V P K + ++ DP K I
Sbjct: 119 KDAASVEKVLD---QKEHRLDGRVIDP---KKAMAMKK----------------DPVKKI 156
Query: 583 FVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISAR 642
FVGG+ P E +G + + DP+L +G + F ++ + +
Sbjct: 157 FVGGL-NPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKK 215
Query: 643 FVQLQHGEIDKRVEVKPYVLDDQ 665
F + + + +V V Q
Sbjct: 216 FHTVSGSKCEIKVAQPKEVYQQQ 238
>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
[Homo sapiens]
Length = 332
Score = 43.5 bits (101), Expect = 7e-04
Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 25/203 (12%)
Query: 463 NGERVERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLF 522
N + E + K+FVGGL D + ++ F +FG +VD K + + +G+ F+LF
Sbjct: 61 NASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGE-VVDCTIKMDPNT-GRSRGFGFILF 118
Query: 523 QDESSVQALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTI 582
+D +SV+ ++D +++ +L V P K + ++ DP K I
Sbjct: 119 KDAASVEKVLD---QKEHRLDGRVIDP---KKAMAMKK----------------DPVKKI 156
Query: 583 FVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISAR 642
FVGG+ P E +G + + DP+L +G + F ++ + +
Sbjct: 157 FVGGL-NPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKK 215
Query: 643 FVQLQHGEIDKRVEVKPYVLDDQ 665
F + + + +V V Q
Sbjct: 216 FHTVSGSKCEIKVAQPKEVYQQQ 238
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 41.2 bits (95), Expect = 0.003
Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 19/176 (10%)
Query: 193 GGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQRRS 252
GG +S N+ V P G P G Q + +Q H Q Q +S
Sbjct: 709 GGGGGSSGYGSYYQGDNYNSPVPPKHAGKKQPHGG--QQKPSYGSGYQSHQGQQQSYNQS 766
Query: 253 PASPHPPP------FTHRNAAFNQLPHLANNLNKPPSPWSS---YQSPSPTPSSSWSPGG 303
P S + PP + H +++ +N+ N P S Y+S S GG
Sbjct: 767 PYSNYGPPQGKQKGYNHGQGSYS----YSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGG 822
Query: 304 GGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQL----QKYARPSSAF 355
YG G S G GG +S + ++ ++ Q Y+ P S++
Sbjct: 823 NSYGSGGASYNPGSHGGYGGGSGGGSSYQGKQGGYSQSNYNSPGSGQNYSGPPSSY 878
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 41.2 bits (95), Expect = 0.003
Identities = 41/176 (23%), Positives = 63/176 (35%), Gaps = 19/176 (10%)
Query: 193 GGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQRRS 252
GG +S N+ V P G P G Q + +Q H Q Q +S
Sbjct: 705 GGGGGSSGYGSYYQGDNYNSPVPPKHAGKKQPHGG--QQKPSYGSGYQSHQGQQQSYNQS 762
Query: 253 PASPHPPP------FTHRNAAFNQLPHLANNLNKPPSPWSS---YQSPSPTPSSSWSPGG 303
P S + PP + H +++ +N+ N P S Y+S S GG
Sbjct: 763 PYSNYGPPQGKQKGYNHGQGSYS----YSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGG 818
Query: 304 GGYGGWGGSQGRDHRRGLNGGITPLNSISPLKKNFASNHIQL----QKYARPSSAF 355
YG G S G GG +S + ++ ++ Q Y+ P S++
Sbjct: 819 NSYGSGGASYNPGSHGGYGGGSGGGSSYQGKQGGYSQSNYNSPGSGQNYSGPPSSY 874
>gi|59938776 cAMP responsive element binding protein 5 isoform delta
[Homo sapiens]
Length = 369
Score = 40.8 bits (94), Expect = 0.005
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 231 QHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPS-----PW 285
QH HHPH Q HH Q+ S + H P H+ + L H N P+ P
Sbjct: 156 QHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPL-HTGNQAQVSPATQQMQPT 214
Query: 286 SSYQSPSPT 294
+ Q P PT
Sbjct: 215 QTIQPPQPT 223
Score = 30.4 bits (67), Expect = 6.1
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 232 HHPH-HPHFQH-----HHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPW 285
HH H HPH QH HH Q + PHP P +N PH ++ + P
Sbjct: 133 HHMHSHPH-QHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNH-----PHHHSHSHLHAHPA 186
Query: 286 SSYQSPSP 293
SP P
Sbjct: 187 HHQTSPHP 194
>gi|59938774 cAMP responsive element binding protein 5 isoform beta
[Homo sapiens]
Length = 501
Score = 40.8 bits (94), Expect = 0.005
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 231 QHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPS-----PW 285
QH HHPH Q HH Q+ S + H P H+ + L H N P+ P
Sbjct: 288 QHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPL-HTGNQAQVSPATQQMQPT 346
Query: 286 SSYQSPSPT 294
+ Q P PT
Sbjct: 347 QTIQPPQPT 355
Score = 30.4 bits (67), Expect = 6.1
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 232 HHPH-HPHFQH-----HHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPW 285
HH H HPH QH HH Q + PHP P +N PH ++ + P
Sbjct: 265 HHMHSHPH-QHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNH-----PHHHSHSHLHAHPA 318
Query: 286 SSYQSPSP 293
SP P
Sbjct: 319 HHQTSPHP 326
>gi|59938772 cAMP responsive element binding protein 5 isoform gamma
[Homo sapiens]
Length = 475
Score = 40.8 bits (94), Expect = 0.005
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 231 QHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPS-----PW 285
QH HHPH Q HH Q+ S + H P H+ + L H N P+ P
Sbjct: 262 QHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPL-HTGNQAQVSPATQQMQPT 320
Query: 286 SSYQSPSPT 294
+ Q P PT
Sbjct: 321 QTIQPPQPT 329
Score = 30.4 bits (67), Expect = 6.1
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 232 HHPH-HPHFQH-----HHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPW 285
HH H HPH QH HH Q + PHP P +N PH ++ + P
Sbjct: 239 HHMHSHPH-QHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNH-----PHHHSHSHLHAHPA 292
Query: 286 SSYQSPSP 293
SP P
Sbjct: 293 HHQTSPHP 300
>gi|59938770 cAMP responsive element binding protein 5 isoform alpha
[Homo sapiens]
Length = 508
Score = 40.8 bits (94), Expect = 0.005
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 231 QHHPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPS-----PW 285
QH HHPH Q HH Q+ S + H P H+ + L H N P+ P
Sbjct: 295 QHPAHHPHPQPHHQQNHPHHHSHSHLHAHPAHHQTSPHPPL-HTGNQAQVSPATQQMQPT 353
Query: 286 SSYQSPSPT 294
+ Q P PT
Sbjct: 354 QTIQPPQPT 362
Score = 30.4 bits (67), Expect = 6.1
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 232 HHPH-HPHFQH-----HHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPW 285
HH H HPH QH HH Q + PHP P +N PH ++ + P
Sbjct: 272 HHMHSHPH-QHQTLPPHHPYPHQHQHPAHHPHPQPHHQQNH-----PHHHSHSHLHAHPA 325
Query: 286 SSYQSPSP 293
SP P
Sbjct: 326 HHQTSPHP 333
>gi|157388908 hypothetical protein LOC54954 [Homo sapiens]
Length = 1096
Score = 40.8 bits (94), Expect = 0.005
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 216 PGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASPHPPP 260
P G++S GP+ HHP H HHH Q Q P P PPP
Sbjct: 69 PAALGAYSGGAGPIRHHHP--AHHFHHHGQAQPGLHPPLPPPPPP 111
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 40.4 bits (93), Expect = 0.006
Identities = 27/80 (33%), Positives = 33/80 (41%), Gaps = 18/80 (22%)
Query: 197 AASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQRRSPASP 256
AA+A GA + F H+ GF P HH HH HHH H + + P
Sbjct: 313 AAAAAAGATCLERF--HLVNGFC--------PPPHHHHHH---HHHHHHHHHRAQPPQQS 359
Query: 257 HPPPFTHRNAAFNQLPHLAN 276
H PP HR PHL +
Sbjct: 360 HHPPHHHR-----PQPHLGS 374
Score = 31.6 bits (70), Expect = 2.7
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 26/118 (22%)
Query: 30 PPHHH----------QNATPSPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEK 79
PPHHH ++ + + ++ AAN S GS+ + S
Sbjct: 362 PPHHHRPQPHLGSFPESCSSDSESSSYSDHAANDSDFGSS--------------LSSSSN 407
Query: 80 AKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKEKIRIES 137
+ S ++E+++ E+++ G ++ + SEE S++ +G ++ ++S
Sbjct: 408 SVSSEEEEEEGEEEEEEEEEEGGSGA--SDSSEVSSEEEDSSTESDSSSGSSQVSVQS 463
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 40.0 bits (92), Expect = 0.008
Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 211 PHHVSPGFGGSFSPQIGPLSQHHPHHPHFQ---HHHSQHQQQRRSPASPHPPP-FTHRNA 266
P H P G P + P Q P P Q H HQ + P PPP ++
Sbjct: 571 PTHTQPNLQGPLHPPLPPPHQPQPQQPQQQPPPQHQPPHQPPHQPPPQHQPPPQHPPQHP 630
Query: 267 AFNQLPHLANNLNKPPSPWSSYQSPSPTP 295
+Q H ++L+ PP P P P
Sbjct: 631 PQHQHHHHHHHLSVPPPPLMPMSQPQFRP 659
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 39.7 bits (91), Expect = 0.010
Identities = 56/225 (24%), Positives = 76/225 (33%), Gaps = 31/225 (13%)
Query: 98 PSPGQEAGILPETEKAKSEENQGDNSSENGNGKEKIRIESPVLTGFDYQEATGLGTSTQP 157
P PG P + S + D NGNG R S + GLG +P
Sbjct: 58 PGPG------PPPSRQSSPPSASDCFGSNGNGGGAFRPGS--------RRLLGLGGPPRP 103
Query: 158 LTSSASSLTGFSNWSAAIAPSSSTIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPG 217
L S + AP+ ++ + G A+ +G L + P P
Sbjct: 104 FVVLLLPLA--SPGAPPAAPTRASPL----------GARASPPRSGVSLARPAPGCPRP- 150
Query: 218 FGGSFSPQIGPLSQH-HPHHPHFQHHHSQHQQQRRSPASPHPPPFTHRNAAFNQLPHLAN 276
+ P GPL+ P Q Q QQQ++ PPP LA+
Sbjct: 151 ---ACEPVYGPLTMSLKPQQQQQQQQQQQQQQQQQQQQQQQPPPAAANVRKPGGSGLLAS 207
Query: 277 NLNKPPSPWSSYQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGL 321
P SS S S T SS G G G +GR+ +GL
Sbjct: 208 PAAAPSPSSSSVSSSSATAPSSVVAATSGGGRPGLGRGRNSNKGL 252
Score = 34.3 bits (77), Expect = 0.42
Identities = 72/307 (23%), Positives = 103/307 (33%), Gaps = 54/307 (17%)
Query: 18 SAFPVRFHPHLQPPHH---HQNATP---SPAAFINNNTAANGSSAGSAWLFPAPATHNIQ 71
S P P QP HQ TP P F N S G L+P P T
Sbjct: 932 STTPTSPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMPV 991
Query: 72 DEILGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGI-LPETEKAKSEENQGDNSSENGNG- 129
++ + Q++QD Q P AG + T A S + + + N
Sbjct: 992 NQAKTYRAVPNMPQQRQDQ-HHQSAMMHPASAAGPPIAATPPAYSTQYVAYSPQQFPNQP 1050
Query: 130 ---------KEKIRIESPVLTGFDYQEATGLGTSTQP-LTSSASSLTGFSNWSAAIAPSS 179
+ + SPV+ G A T QP L SS+++ G + A+
Sbjct: 1051 LVQHVPHYQSQHPHVYSPVIQGNARMMAPP--THAQPGLVSSSATQYGAHEQTHAMYACP 1108
Query: 180 STIINEDASFFHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHF 239
N++ S + S L Q + H P + HPH PH
Sbjct: 1109 KLPYNKETSPSFYFAISTGS------LAQQYAH---------------PNATLHPHTPHP 1147
Query: 240 QHHHSQ--HQQQRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSPWSSYQS------P 291
Q + QQ + + P P P H Q HLA+ P + Y + P
Sbjct: 1148 QPSATPTGQQQSQHGGSHPAPSPVQHHQHQAAQALHLAS----PQQQSAIYHAGLAPTPP 1203
Query: 292 SPTPSSS 298
S TP+S+
Sbjct: 1204 SMTPASN 1210
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 39.7 bits (91), Expect = 0.010
Identities = 80/346 (23%), Positives = 109/346 (31%), Gaps = 72/346 (20%)
Query: 18 SAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAWLFPA--PATHNIQDEI- 74
SA P PH+ P N P PA NN +A+ G+ L P P+ H + +
Sbjct: 287 SAPPPANFPHVTP-----NLPPPPALRPLNNASASPPGLGAQPL-PGHLPSPHAMGQGMG 340
Query: 75 ---LGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKE 131
G EK + +P+P P + + S +SS + +
Sbjct: 341 GLPPGPEKGPTLAPSPHSLPPASSSAPAPPMR---FPYSSSSSSSAAASSSSSSSSSSAS 397
Query: 132 KIRIESPVLTGF--DYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINEDASF 189
S L + + T L S QP + SL + WS
Sbjct: 398 PFPA-SQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWS----------------- 439
Query: 190 FHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQ 249
QG P G LL + H G F P G S HP HHH Q QQQ
Sbjct: 440 --QG--PPPPPPYGRLLANSNAHP------GPFPPSTGAQSTAHPPVSTHHHHHQQQQQQ 489
Query: 250 RRSP--------------------ASPHP--PPFTHRNAAFNQLPHLANNLNKPPSPWSS 287
++ A PHP +H + P L + PP P
Sbjct: 490 QQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGP--- 546
Query: 288 YQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGITPLNSISP 333
+ P P S S G G S + + G P + SP
Sbjct: 547 --AHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSP 590
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 39.7 bits (91), Expect = 0.010
Identities = 80/346 (23%), Positives = 109/346 (31%), Gaps = 72/346 (20%)
Query: 18 SAFPVRFHPHLQPPHHHQNATPSPAAFINNNTAANGSSAGSAWLFPA--PATHNIQDEI- 74
SA P PH+ P N P PA NN +A+ G+ L P P+ H + +
Sbjct: 287 SAPPPANFPHVTP-----NLPPPPALRPLNNASASPPGLGAQPL-PGHLPSPHAMGQGMG 340
Query: 75 ---LGSEKAKSQQQEQQDPLEKQQLSPSPGQEAGILPETEKAKSEENQGDNSSENGNGKE 131
G EK + +P+P P + + S +SS + +
Sbjct: 341 GLPPGPEKGPTLAPSPHSLPPASSSAPAPPMR---FPYSSSSSSSAAASSSSSSSSSSAS 397
Query: 132 KIRIESPVLTGF--DYQEATGLGTSTQPLTSSASSLTGFSNWSAAIAPSSSTIINEDASF 189
S L + + T L S QP + SL + WS
Sbjct: 398 PFPA-SQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWS----------------- 439
Query: 190 FHQGGVPAASANNGALLFQNFPHHVSPGFGGSFSPQIGPLSQHHPHHPHFQHHHSQHQQQ 249
QG P G LL + H G F P G S HP HHH Q QQQ
Sbjct: 440 --QG--PPPPPPYGRLLANSNAHP------GPFPPSTGAQSTAHPPVSTHHHHHQQQQQQ 489
Query: 250 RRSP--------------------ASPHP--PPFTHRNAAFNQLPHLANNLNKPPSPWSS 287
++ A PHP +H + P L + PP P
Sbjct: 490 QQQQQQQQQQQQQHHGNSGPPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGP--- 546
Query: 288 YQSPSPTPSSSWSPGGGGYGGWGGSQGRDHRRGLNGGITPLNSISP 333
+ P P S S G G S + + G P + SP
Sbjct: 547 --AHLPPPHSQVSYSQAGPNGPPVSSSSNSSSSTSQGSYPCSHPSP 590
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 39.7 bits (91), Expect = 0.010
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 227 GPLSQHHPHHPHFQHHHSQHQQQRRSPASP 256
G +H HH H HHH HQQQ + P+ P
Sbjct: 100 GRAPSYHHHHHHHHHHHHHHQQQHQQPSIP 129
Score = 38.5 bits (88), Expect = 0.022
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 232 HHPHHPHFQHHHSQHQQQRRSPA-SPHPPPFTHRNAAFNQLPHLANNLNK-PPSPWSSYQ 289
HH HH H HH QHQQ PA SP + F Q P PP + +
Sbjct: 109 HHHHHHHHHHHQQQHQQPSIPPASSPEDEVLPSTSMYFKQSPPSTPTTPAFPPQAGALWD 168
Query: 290 SPSPTPSSSWSPG 302
P+ +PG
Sbjct: 169 EALPSAPGCIAPG 181
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,472,494
Number of Sequences: 37866
Number of extensions: 1928152
Number of successful extensions: 13789
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 337
Number of HSP's that attempted gapping in prelim test: 11370
Number of HSP's gapped (non-prelim): 1886
length of query: 729
length of database: 18,247,518
effective HSP length: 110
effective length of query: 619
effective length of database: 14,082,258
effective search space: 8716917702
effective search space used: 8716917702
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.